Wall clock time and date at job start Tue Mar 31 2020 17:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38092 * 119.58652 * 2 1 4 4 C 1.38783 * 119.28632 * 179.74961 * 3 2 1 5 5 C 1.50698 * 120.75546 * 180.25642 * 4 3 2 6 6 C 1.38415 * 118.48634 * 0.49057 * 4 3 2 7 7 C 1.50699 * 120.44269 * 179.76129 * 6 4 3 8 8 C 1.50704 * 109.47196 * 274.96871 * 7 6 4 9 9 O 1.21287 * 119.99685 * 4.64650 * 8 7 6 10 10 N 1.34773 * 119.99955 * 184.64220 * 8 7 6 11 11 C 1.46493 * 120.00329 * 4.86837 * 10 8 7 12 12 C 1.46506 * 119.99969 * 184.86706 * 10 8 7 13 13 C 1.53001 * 109.47032 * 85.03255 * 12 10 8 14 14 H 1.09003 * 112.73993 * 315.63918 * 13 12 10 15 15 C 1.53498 * 113.46461 * 86.45895 * 13 12 10 16 16 C 1.53229 * 83.43001 * 140.67739 * 15 13 12 17 17 N 1.47064 * 88.08615 * 334.10322 * 16 15 13 18 18 C 1.36931 * 136.06086 * 207.20774 * 17 16 15 19 19 H 1.08004 * 120.00234 * 174.35753 * 18 17 16 20 20 C 1.38813 * 119.99987 * 354.63527 * 18 17 16 21 21 N 1.31620 * 119.99805 * 4.72481 * 20 18 17 22 22 Si 1.86796 * 120.00072 * 184.72742 * 20 18 17 23 23 H 1.48508 * 109.47198 * 64.99810 * 22 20 18 24 24 H 1.48504 * 109.47169 * 184.99425 * 22 20 18 25 25 H 1.48496 * 109.47469 * 304.99780 * 22 20 18 26 26 C 1.38880 * 119.11354 * 359.48880 * 6 4 3 27 27 O 1.35678 * 119.68066 * 180.29196 * 26 6 4 28 28 N 1.31937 * 119.58275 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46956 * 270.01780 * 1 2 3 30 30 H 1.09001 * 109.47149 * 30.02519 * 1 2 3 31 31 H 1.09009 * 109.46966 * 150.02207 * 1 2 3 32 32 H 1.08003 * 120.34942 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47408 * 274.70088 * 5 4 3 34 34 H 1.09004 * 109.46975 * 34.69632 * 5 4 3 35 35 H 1.08999 * 109.47634 * 154.69820 * 5 4 3 36 36 H 1.08995 * 109.47319 * 154.96921 * 7 6 4 37 37 H 1.09007 * 109.47334 * 34.96934 * 7 6 4 38 38 H 1.08998 * 109.47686 * 269.99873 * 11 10 8 39 39 H 1.09002 * 109.47115 * 29.99967 * 11 10 8 40 40 H 1.08997 * 109.47557 * 149.99402 * 11 10 8 41 41 H 1.08997 * 109.46669 * 325.03617 * 12 10 8 42 42 H 1.08997 * 109.47242 * 205.03480 * 12 10 8 43 43 H 1.09007 * 114.20249 * 254.43385 * 15 13 12 44 44 H 1.08997 * 114.20638 * 27.05608 * 15 13 12 45 45 H 1.09004 * 113.38669 * 219.28935 * 16 15 13 46 46 H 1.08998 * 113.47444 * 88.92988 * 16 15 13 47 47 H 0.96996 * 120.00053 * 180.02562 * 21 20 18 48 48 H 0.96702 * 113.99799 * 90.00230 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1936 0.0053 5 6 4.3540 2.4846 0.0113 6 6 4.2304 -0.0264 0.0000 7 6 5.7363 -0.0857 0.0000 8 6 6.2433 0.0238 -1.4150 9 8 5.4656 0.2231 -2.3241 10 7 7.5609 -0.0997 -1.6700 11 6 8.4870 -0.4459 -0.5891 12 6 8.0671 0.1123 -3.0285 13 6 8.3136 1.6054 -3.2536 14 1 7.5003 2.2278 -2.8802 15 6 9.7022 2.0717 -2.7948 16 6 9.6418 2.9253 -4.0658 17 7 8.7161 1.9315 -4.6300 18 6 8.3809 1.4968 -5.8845 19 1 7.7067 0.6616 -6.0044 20 6 8.9122 2.1259 -7.0021 21 7 9.8088 3.0785 -6.8570 22 14 8.3544 1.6207 -8.7117 23 1 6.9163 1.9502 -8.8808 24 1 9.1525 2.3514 -9.7288 25 1 8.5510 0.1590 -8.8848 26 6 3.4802 -1.1951 0.0004 27 8 4.1092 -2.3973 0.0013 28 7 2.1584 -1.1474 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6478 2.1356 0.0004 33 1 4.4732 2.8417 -1.0117 34 1 3.8153 3.2304 0.5959 35 1 5.3357 2.3156 0.4538 36 1 6.0626 -1.0323 0.4306 37 1 6.1324 0.7389 0.5927 38 1 8.8501 0.4662 -0.1155 39 1 7.9702 -1.0581 0.1500 40 1 9.3299 -1.0036 -0.9973 41 1 7.3334 -0.2477 -3.7497 42 1 9.0016 -0.4338 -3.1574 43 1 9.6973 2.6454 -1.8679 44 1 10.4645 1.2929 -2.8153 45 1 10.5932 2.9817 -4.5947 46 1 9.1867 3.9035 -3.9106 47 1 10.1798 3.5184 -7.6378 48 1 4.2913 -2.7452 0.8850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688883918.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:24 Heat of formation + Delta-G solvation = -9.694674 kcal Electronic energy + Delta-G solvation = -29246.291548 eV Core-core repulsion = 25302.561995 eV Total energy + Delta-G solvation = -3943.729554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94606 -40.83456 -39.62719 -38.29862 -36.46084 -35.76702 -34.30976 -32.94958 -31.61119 -29.93264 -29.74081 -28.66350 -27.48076 -26.49296 -25.43567 -24.12959 -23.46500 -21.93233 -21.07802 -20.09178 -19.37868 -18.74047 -18.35699 -17.88592 -17.42155 -17.03496 -16.61059 -16.34467 -16.12979 -15.81766 -15.36634 -15.14410 -14.69635 -14.45929 -14.40402 -14.09249 -14.03132 -13.84659 -13.69092 -13.67965 -13.46559 -13.28251 -13.15197 -12.96605 -12.85622 -12.77962 -12.66598 -12.48386 -12.44075 -12.37573 -12.23938 -11.85154 -11.64105 -11.22946 -10.91002 -10.89650 -10.45080 -10.36530 -9.61748 -9.56335 -8.92168 -7.94997 -5.26697 -0.01832 0.20365 1.39386 1.43374 1.49405 1.68610 2.04414 2.44947 2.56829 2.68999 3.25316 3.44259 3.48207 3.67748 3.71184 3.82386 3.89205 3.92388 4.18762 4.22821 4.32791 4.37515 4.40834 4.46830 4.53735 4.56833 4.63596 4.70696 4.73321 4.77781 4.83036 4.88030 4.93719 4.99059 4.99769 5.04739 5.08322 5.11037 5.21330 5.22794 5.33953 5.48600 5.54438 5.66721 5.75296 5.93119 6.49441 6.63817 6.89785 6.96371 7.26337 7.57288 8.59224 9.22574 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.003007 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.885045 B = 9308.645743 C =10025.161403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.135 3.865 3 C -0.189 4.189 4 C -0.018 4.018 5 C -0.118 4.118 6 C -0.154 4.154 7 C -0.079 4.079 8 C 0.507 3.493 9 O -0.590 6.590 10 N -0.608 5.608 11 C 0.068 3.932 12 C 0.132 3.868 13 C 0.136 3.864 14 H 0.024 0.976 15 C -0.124 4.124 16 C 0.147 3.853 17 N -0.633 5.633 18 C -0.227 4.227 19 H 0.072 0.928 20 C -0.062 4.062 21 N -0.949 5.949 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.312 3.688 27 O -0.490 6.490 28 N -0.540 5.540 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.163 0.837 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.040 0.960 46 H 0.010 0.990 47 H 0.250 0.750 48 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -5.577 26.208 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.209 4.209 4 C -0.026 4.026 5 C -0.174 4.174 6 C -0.158 4.158 7 C -0.119 4.119 8 C 0.296 3.704 9 O -0.470 6.470 10 N -0.341 5.341 11 C -0.073 4.073 12 C 0.007 3.993 13 C 0.029 3.971 14 H 0.042 0.958 15 C -0.162 4.162 16 C 0.021 3.979 17 N -0.359 5.359 18 C -0.355 4.355 19 H 0.089 0.911 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.800 3.200 23 H -0.214 1.214 24 H -0.213 1.213 25 H -0.198 1.198 26 C 0.133 3.867 27 O -0.300 6.300 28 N -0.261 5.261 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.181 0.819 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.059 0.941 48 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -9.880 -6.262 24.789 27.410 hybrid contribution 0.114 0.565 -1.364 1.481 sum -9.766 -5.697 23.425 26.011 Atomic orbital electron populations 1.20817 0.86385 1.04120 1.04407 1.21557 0.98285 0.87068 0.93302 1.22137 0.94028 1.00248 1.04472 1.20424 0.94404 0.95556 0.92178 1.20925 1.00688 0.93088 1.02674 1.20371 0.96581 0.92861 1.05952 1.20566 0.90537 1.07765 0.93014 1.21193 0.81752 0.75588 0.91855 1.90734 1.56730 1.50565 1.48941 1.47927 1.07163 1.68995 1.10026 1.22222 0.93614 1.02306 0.89204 1.21415 0.98568 0.96324 0.82965 1.22470 0.95602 0.94233 0.84773 0.95816 1.23447 0.95799 0.99831 0.97096 1.21949 0.93572 0.91237 0.91141 1.46019 1.46781 1.42863 1.00215 1.19122 1.22916 1.11203 0.82269 0.91062 1.25562 0.99984 0.98873 1.01161 1.70002 1.31907 1.28653 1.29191 0.85257 0.77322 0.77881 0.79583 1.21375 1.21257 1.19824 1.19083 0.86910 0.85377 0.95331 1.84801 1.76396 1.33269 1.35532 1.66979 1.10045 1.31991 1.17075 0.88344 0.88677 0.91314 0.81913 0.92247 0.88193 0.89534 0.84954 0.84482 0.90268 0.88317 0.89991 0.94917 0.89048 0.88625 0.88853 0.94185 0.97254 0.94136 0.72206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.17 71.24 0.72 -0.81 16 2 C 0.13 3.12 6.78 42.51 0.29 3.41 16 3 C -0.19 -3.99 9.46 22.37 0.21 -3.78 16 4 C -0.02 -0.41 5.91 -19.69 -0.12 -0.53 16 5 C -0.12 -2.18 9.74 71.24 0.69 -1.48 16 6 C -0.15 -3.73 4.41 -19.67 -0.09 -3.82 16 7 C -0.08 -1.51 4.01 29.10 0.12 -1.39 16 8 C 0.51 15.47 7.62 87.66 0.67 16.14 16 9 O -0.59 -25.64 15.67 -3.05 -0.05 -25.68 16 10 N -0.61 -16.59 2.88 -846.76 -2.44 -19.03 16 11 C 0.07 0.97 10.25 127.77 1.31 2.28 16 12 C 0.13 4.89 5.38 86.38 0.47 5.36 16 13 C 0.14 5.72 4.29 41.79 0.18 5.90 16 14 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 15 C -0.12 -4.29 8.00 30.84 0.25 -4.05 16 16 C 0.15 7.10 7.32 83.08 0.61 7.71 16 17 N -0.63 -34.12 3.65 -714.49 -2.61 -36.73 16 18 C -0.23 -13.61 10.54 84.03 0.89 -12.72 16 19 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 21 N -0.95 -59.26 11.60 21.65 0.25 -59.00 16 22 Si 0.97 48.46 29.56 68.60 2.03 50.49 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 25 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 26 C 0.31 8.31 7.72 84.78 0.65 8.97 16 27 O -0.49 -11.14 12.54 -89.96 -1.13 -12.27 16 28 N -0.54 -15.15 10.30 -296.98 -3.06 -18.21 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.08 8.08 -2.39 -0.02 1.07 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.27 8.13 -2.39 -0.02 1.25 16 35 H 0.09 1.29 6.00 -2.39 -0.01 1.28 16 36 H 0.13 1.65 6.26 -2.39 -0.01 1.63 16 37 H 0.14 1.70 6.25 -2.38 -0.01 1.68 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.80 6.35 -2.39 -0.02 0.78 16 40 H 0.08 1.08 7.86 -2.39 -0.02 1.06 16 41 H 0.03 1.51 7.51 -2.39 -0.02 1.49 16 42 H 0.09 3.10 7.57 -2.39 -0.02 3.08 16 43 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 44 H 0.09 2.96 7.94 -2.39 -0.02 2.94 16 45 H 0.04 2.14 7.27 -2.39 -0.02 2.12 16 46 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.42 4.16 9.06 -74.06 -0.67 3.49 16 Total: -1.00 -90.95 394.09 0.62 -90.33 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.31 Total: 12.21 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 7.32 Total: 17.89 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -7.86 Total: -132.97 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.18 Total: -37.96 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -90.95 0.62 -90.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688883918.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.638 kcal (2) G-P(sol) polarization free energy of solvation -90.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds