Wall clock time and date at job start Tue Mar 31 2020 17:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38089 * 119.58484 * 2 1 4 4 C 1.38785 * 119.28856 * 179.70582 * 3 2 1 5 5 C 1.50707 * 120.75680 * 180.29971 * 4 3 2 6 6 C 1.38424 * 118.48488 * 0.53708 * 4 3 2 7 7 C 1.50693 * 120.44232 * 179.73777 * 6 4 3 8 8 C 1.50700 * 109.47431 * 269.72352 * 7 6 4 9 9 O 1.21291 * 119.99743 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00583 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00309 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47217 * 179.97438 * 11 10 8 13 13 N 1.46494 * 109.47158 * 179.97438 * 12 11 10 14 14 C 1.36934 * 120.00171 * 269.99638 * 13 12 11 15 15 H 1.08001 * 119.99767 * 140.53314 * 14 13 12 16 16 C 1.38806 * 119.99964 * 320.54068 * 14 13 12 17 17 N 1.31612 * 120.00311 * 340.27091 * 16 14 13 18 18 Si 1.86808 * 120.00031 * 160.27426 * 16 14 13 19 19 H 1.48495 * 109.46936 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47040 * 119.99720 * 18 16 14 21 21 H 1.48501 * 109.47302 * 239.99950 * 18 16 14 22 22 C 1.46502 * 120.00174 * 89.99788 * 13 12 11 23 23 C 1.52997 * 117.50203 * 183.28936 * 22 13 12 24 24 C 1.52997 * 117.50023 * 114.66451 * 22 13 12 25 25 C 1.38874 * 119.11274 * 359.46679 * 6 4 3 26 26 O 1.35672 * 119.68704 * 180.25014 * 25 6 4 27 27 N 1.31937 * 119.58476 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47227 * 270.01628 * 1 2 3 29 29 H 1.09002 * 109.47078 * 30.02149 * 1 2 3 30 30 H 1.09000 * 109.47182 * 150.01538 * 1 2 3 31 31 H 1.08005 * 120.35402 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.46803 * 270.23900 * 5 4 3 33 33 H 1.08994 * 109.47428 * 30.24675 * 5 4 3 34 34 H 1.09002 * 109.46556 * 150.24525 * 5 4 3 35 35 H 1.09002 * 109.46950 * 149.72339 * 7 6 4 36 36 H 1.08996 * 109.47430 * 29.72720 * 7 6 4 37 37 H 0.96996 * 119.99818 * 359.97438 * 10 8 7 38 38 H 1.08995 * 109.47213 * 59.99281 * 11 10 8 39 39 H 1.08999 * 109.46492 * 299.99761 * 11 10 8 40 40 H 1.09002 * 109.47168 * 59.99469 * 12 11 10 41 41 H 1.09006 * 109.46676 * 299.99983 * 12 11 10 42 42 H 0.97000 * 120.00354 * 175.01413 * 17 16 14 43 43 H 1.09008 * 115.54694 * 329.00129 * 22 13 12 44 44 H 1.08996 * 117.49829 * 359.97438 * 23 22 13 45 45 H 1.08995 * 117.50052 * 145.02543 * 23 22 13 46 46 H 1.09002 * 117.50243 * 214.98368 * 24 22 13 47 47 H 1.09002 * 117.49904 * 359.97438 * 24 22 13 48 48 H 0.96706 * 113.99589 * 89.99876 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5765 1.1937 0.0062 5 6 4.3539 2.4848 0.0132 6 6 4.2305 -0.0263 0.0008 7 6 5.7362 -0.0856 0.0013 8 6 6.2387 -0.1055 -1.4194 9 8 5.4514 -0.0742 -2.3415 10 7 7.5627 -0.1581 -1.6653 11 6 8.0511 -0.1770 -3.0464 12 6 9.5799 -0.2372 -3.0460 13 7 10.0682 -0.2566 -4.4270 14 6 10.2499 -1.4507 -5.0723 15 1 9.9841 -1.5470 -6.1146 16 6 10.7754 -2.5372 -4.3867 17 7 11.4500 -2.3486 -3.2724 18 14 10.5252 -4.2672 -5.0455 19 1 9.7381 -4.2088 -6.3034 20 1 11.8462 -4.8897 -5.3160 21 1 9.7922 -5.0785 -4.0407 22 6 10.3624 1.0014 -5.1177 23 6 10.7953 0.9184 -6.5828 24 6 11.8183 1.2729 -5.5017 25 6 3.4803 -1.1950 0.0007 26 8 4.1092 -2.3972 0.0006 27 7 2.1583 -1.1474 0.0005 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6477 2.1356 -0.0004 32 1 4.5422 2.8010 -1.0128 33 1 3.7785 3.2526 0.5303 34 1 5.3033 2.3344 0.5271 35 1 6.0641 -0.9891 0.5153 36 1 6.1341 0.7894 0.5151 37 1 8.1923 -0.1828 -0.9279 38 1 7.7235 0.7269 -3.5600 39 1 7.6528 -1.0516 -3.5606 40 1 9.9078 -1.1409 -2.5322 41 1 9.9778 0.6377 -2.5317 42 1 11.7549 -3.1104 -2.7552 43 1 9.7528 1.8547 -4.8202 44 1 10.8617 -0.0721 -7.0327 45 1 10.4706 1.7172 -7.2496 46 1 12.1665 2.3048 -5.4572 47 1 12.5574 0.5157 -5.2400 48 1 4.2915 -2.7457 0.8841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691221202.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:29 Heat of formation + Delta-G solvation = -2.015859 kcal Electronic energy + Delta-G solvation = -28484.512982 eV Core-core repulsion = 24541.116407 eV Total energy + Delta-G solvation = -3943.396575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97177 -39.09564 -37.38621 -37.10015 -35.06418 -34.57573 -33.19043 -32.07100 -31.03847 -30.28961 -28.02212 -27.63943 -25.84429 -24.29143 -22.89096 -21.83623 -21.32189 -21.05197 -20.08798 -19.70269 -18.46972 -17.39460 -17.02433 -16.13341 -16.02685 -15.56775 -15.44910 -15.06250 -14.91817 -14.50402 -14.27914 -13.96237 -13.65494 -13.61524 -13.22978 -13.15861 -13.08109 -12.79536 -12.65296 -12.49802 -12.08306 -11.94733 -11.88297 -11.69247 -11.61829 -11.50943 -11.05438 -10.75937 -10.71917 -10.32292 -10.14963 -9.85936 -9.71335 -9.63511 -9.52983 -9.46066 -9.28558 -8.73106 -8.57129 -8.48333 -6.60844 -5.85659 -3.52284 0.86651 1.07604 2.97035 3.30144 3.33038 3.41672 3.45311 3.48268 3.75473 4.28939 4.41779 4.42481 4.69300 4.69980 4.92452 4.96134 5.08316 5.13756 5.18637 5.22731 5.27509 5.31741 5.33770 5.41090 5.48051 5.56697 5.67149 5.86245 5.89554 5.91038 6.03613 6.09166 6.13903 6.20357 6.28324 6.42740 6.49834 6.50771 6.61313 6.86880 6.97861 7.07030 7.22461 7.40427 7.47222 7.75718 7.84890 7.92293 8.43376 8.60692 9.08127 9.68590 10.26289 11.09657 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.002710 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.998525 B =10331.504214 C =11392.993993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.148 3.852 3 C -0.184 4.184 4 C -0.012 4.012 5 C -0.120 4.120 6 C -0.133 4.133 7 C -0.097 4.097 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.721 5.721 11 C 0.100 3.900 12 C 0.142 3.858 13 N -0.547 5.547 14 C -0.260 4.260 15 H 0.066 0.934 16 C 0.016 3.984 17 N -0.883 5.883 18 Si 0.895 3.105 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.286 1.286 22 C 0.119 3.881 23 C -0.195 4.195 24 C -0.219 4.219 25 C 0.333 3.667 26 O -0.474 6.474 27 N -0.508 5.508 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.397 0.603 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.032 0.968 42 H 0.254 0.746 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.496 9.120 13.074 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 C -0.204 4.204 4 C -0.020 4.020 5 C -0.176 4.176 6 C -0.137 4.137 7 C -0.137 4.137 8 C 0.297 3.703 9 O -0.415 6.415 10 N -0.372 5.372 11 C -0.026 4.026 12 C 0.015 3.985 13 N -0.264 5.264 14 C -0.389 4.389 15 H 0.083 0.917 16 C -0.185 4.185 17 N -0.525 5.525 18 Si 0.724 3.276 19 H -0.199 1.199 20 H -0.215 1.215 21 H -0.213 1.213 22 C 0.011 3.989 23 C -0.233 4.233 24 C -0.260 4.260 25 C 0.153 3.847 26 O -0.280 6.280 27 N -0.228 5.228 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.154 0.846 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.230 0.770 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.111 0.889 48 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -15.355 8.243 11.856 21.078 hybrid contribution 0.858 -0.427 0.445 1.057 sum -14.497 7.816 12.301 20.556 Atomic orbital electron populations 1.20722 0.88630 1.03655 1.03007 1.20943 0.96656 0.87242 0.94067 1.21757 0.93884 0.99289 1.05504 1.20045 0.93709 0.94864 0.93390 1.20902 0.99853 0.93354 1.03536 1.20143 0.95630 0.92834 1.05102 1.20520 0.91685 1.05156 0.96363 1.20264 0.82697 0.76839 0.90471 1.90712 1.55338 1.49326 1.46145 1.46062 1.06354 1.74493 1.10317 1.22317 0.98766 1.01226 0.80248 1.21001 0.87779 1.02309 0.87385 1.43178 1.72071 1.00237 1.10939 1.19082 1.35879 0.87382 0.96598 0.91682 1.25233 0.95633 0.99336 0.98273 1.70056 1.35506 1.29890 1.17031 0.86353 0.77564 0.84713 0.78960 1.19871 1.21522 1.21252 1.21235 0.93596 0.90379 0.93735 1.23023 1.05646 1.02110 0.92512 1.23342 0.96479 0.99897 1.06294 1.18847 0.86579 0.84844 0.94380 1.84893 1.76493 1.33404 1.33256 1.66961 1.09540 1.30695 1.15619 0.90367 0.90540 0.90388 0.84569 0.89888 0.90838 0.90734 0.87865 0.87838 0.76991 0.93253 0.91663 0.88363 0.94985 0.93569 0.89608 0.88405 0.90751 0.91252 0.88931 0.74713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.17 36.00 0.37 -0.46 16 2 C 0.15 1.75 6.78 -82.60 -0.56 1.19 16 3 C -0.18 -1.95 9.44 -39.43 -0.37 -2.32 16 4 C -0.01 -0.14 5.91 -104.35 -0.62 -0.76 16 5 C -0.12 -1.04 9.67 36.01 0.35 -0.69 16 6 C -0.13 -1.73 4.40 -104.32 -0.46 -2.19 16 7 C -0.10 -1.11 5.26 -29.04 -0.15 -1.26 16 8 C 0.51 8.38 7.82 -10.99 -0.09 8.30 16 9 O -0.54 -11.38 16.03 5.55 0.09 -11.29 16 10 N -0.72 -11.56 5.56 -60.29 -0.33 -11.90 16 11 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 12 C 0.14 3.08 5.45 -4.04 -0.02 3.06 16 13 N -0.55 -13.14 2.75 -165.66 -0.46 -13.60 16 14 C -0.26 -6.87 8.47 -15.06 -0.13 -7.00 16 15 H 0.07 1.75 6.75 -52.49 -0.35 1.40 16 16 C 0.02 0.43 4.98 -17.44 -0.09 0.34 16 17 N -0.88 -24.20 11.50 55.49 0.64 -23.56 16 18 Si 0.90 21.38 29.60 -169.99 -5.03 16.34 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.12 2.53 6.56 -67.93 -0.45 2.08 16 23 C -0.19 -3.86 9.80 -26.73 -0.26 -4.12 16 24 C -0.22 -4.43 10.36 -26.73 -0.28 -4.71 16 25 C 0.33 4.77 7.72 -17.12 -0.13 4.64 16 26 O -0.47 -6.37 12.62 -18.72 -0.24 -6.61 16 27 N -0.51 -7.34 10.30 -9.55 -0.10 -7.44 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 34 H 0.07 0.55 6.08 -51.93 -0.32 0.24 16 35 H 0.10 0.98 7.55 -51.93 -0.39 0.59 16 36 H 0.10 0.86 6.06 -51.93 -0.31 0.55 16 37 H 0.40 5.17 8.47 -40.82 -0.35 4.82 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.10 2.38 5.59 -51.93 -0.29 2.09 16 41 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 42 H 0.25 6.73 8.32 -40.82 -0.34 6.39 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 44 H 0.10 2.12 6.46 -51.93 -0.34 1.78 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 48 H 0.40 2.95 9.06 45.56 0.41 3.37 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -35.08 398.40 -8.89 -43.98 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.56 Total: 10.01 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.91 Total: -1.94 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.25 Total: -56.50 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.15 Total: -17.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.08 -8.89 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691221202.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.961 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds