Wall clock time and date at job start Tue Mar 31 2020 17:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38085 * 119.58646 * 2 1 4 4 C 1.38784 * 119.29420 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.76336 * 179.97438 * 4 3 2 6 6 C 1.38424 * 118.48103 * 359.74525 * 4 3 2 7 7 C 1.50696 * 120.44436 * 180.24551 * 6 4 3 8 8 C 1.50695 * 109.47736 * 270.25298 * 7 6 4 9 9 O 1.21288 * 119.99404 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00883 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00476 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47146 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.85035 * 316.19587 * 12 11 10 14 14 C 1.53781 * 113.61510 * 87.50519 * 12 11 10 15 15 C 1.53779 * 87.08414 * 139.97854 * 14 12 11 16 16 H 1.08997 * 113.68835 * 220.00616 * 15 14 12 17 17 N 1.46495 * 113.61350 * 89.11284 * 15 14 12 18 18 C 1.36942 * 119.99778 * 107.50143 * 17 15 14 19 19 H 1.07997 * 120.00167 * 0.02562 * 18 17 15 20 20 C 1.38815 * 119.99746 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47047 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47114 * 119.99775 * 22 20 18 25 25 H 1.48495 * 109.47473 * 240.00265 * 22 20 18 26 26 C 1.53783 * 87.07995 * 334.56762 * 15 14 12 27 27 C 1.38879 * 119.11183 * 0.49490 * 6 4 3 28 28 O 1.35677 * 119.68343 * 179.77049 * 27 6 4 29 29 N 1.31942 * 119.58389 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47129 * 270.02037 * 1 2 3 31 31 H 1.09000 * 109.47437 * 30.02081 * 1 2 3 32 32 H 1.08998 * 109.47545 * 150.02498 * 1 2 3 33 33 H 1.08006 * 120.35466 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.46964 * 89.99468 * 5 4 3 35 35 H 1.09002 * 109.47431 * 209.99679 * 5 4 3 36 36 H 1.09000 * 109.46900 * 329.99666 * 5 4 3 37 37 H 1.09009 * 109.47271 * 30.25660 * 7 6 4 38 38 H 1.09009 * 109.47114 * 150.24805 * 7 6 4 39 39 H 0.97003 * 119.99334 * 0.02562 * 10 8 7 40 40 H 1.09005 * 109.47272 * 299.99698 * 11 10 8 41 41 H 1.09000 * 109.47535 * 59.99814 * 11 10 8 42 42 H 1.09000 * 113.61314 * 254.53011 * 14 12 11 43 43 H 1.09005 * 113.61596 * 25.42328 * 14 12 11 44 44 H 0.97002 * 120.00480 * 287.50588 * 17 15 14 45 45 H 0.97001 * 119.99888 * 179.97438 * 21 20 18 46 46 H 1.09007 * 113.61150 * 270.88204 * 26 15 14 47 47 H 1.08996 * 113.61287 * 139.98399 * 26 15 14 48 48 H 0.96700 * 114.00259 * 269.72871 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2008 0.0000 4 6 3.5765 1.1937 0.0005 5 6 4.3539 2.4847 0.0000 6 6 4.2304 -0.0263 0.0065 7 6 5.7362 -0.0856 0.0129 8 6 6.2444 -0.1029 -1.4057 9 8 5.4608 -0.0707 -2.3309 10 7 7.5694 -0.1540 -1.6464 11 6 8.0634 -0.1703 -3.0254 12 6 9.5922 -0.2306 -3.0189 13 1 10.0394 0.4459 -2.2905 14 6 10.1520 -1.6616 -2.9583 15 6 11.2216 -1.2017 -3.9629 16 1 11.4489 -1.9419 -4.7301 17 7 12.4226 -0.6507 -3.3304 18 6 13.5895 -1.3673 -3.3361 19 1 13.6245 -2.3384 -3.8073 20 6 14.7274 -0.8454 -2.7362 21 7 14.6845 0.3379 -2.1615 22 14 16.3194 -1.8226 -2.7446 23 1 16.1051 -3.1119 -3.4496 24 1 17.3735 -1.0454 -3.4447 25 1 16.7453 -2.0871 -1.3468 26 6 10.2187 -0.1291 -4.4197 27 6 3.4802 -1.1950 0.0012 28 8 4.1091 -2.3972 0.0022 29 7 2.1583 -1.1474 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 1.6477 2.1356 -0.0004 34 1 4.5409 2.7967 1.0276 35 1 5.3040 2.3365 -0.5133 36 1 3.7791 3.2547 -0.5146 37 1 6.1321 0.7885 0.5301 38 1 6.0620 -0.9901 0.5266 39 1 8.1961 -0.1802 -0.9064 40 1 7.6679 -1.0444 -3.5428 41 1 7.7373 0.7342 -3.5389 42 1 10.5565 -1.9312 -1.9827 43 1 9.4720 -2.4138 -3.3581 44 1 12.3912 0.2217 -2.9074 45 1 15.4795 0.7024 -1.7420 46 1 9.5569 -0.4623 -5.2192 47 1 10.6771 0.8385 -4.6239 48 1 4.2919 -2.7463 -0.8809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691517289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:06 Heat of formation + Delta-G solvation = -50.237085 kcal Electronic energy + Delta-G solvation = -27832.119641 eV Core-core repulsion = 23886.632036 eV Total energy + Delta-G solvation = -3945.487604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92673 -40.71261 -39.78511 -38.27102 -36.08357 -35.70736 -34.93914 -32.94850 -32.15713 -31.30478 -28.94377 -28.49798 -26.68589 -26.42599 -25.56638 -23.81191 -23.06657 -22.11299 -21.31887 -19.82255 -19.37070 -19.31652 -18.30226 -18.01465 -17.37292 -16.70571 -16.63199 -16.44441 -16.04379 -15.77949 -15.55460 -15.16370 -14.87594 -14.69500 -14.57277 -14.43321 -14.09002 -13.91724 -13.84716 -13.65433 -13.29136 -13.19751 -12.99629 -12.92576 -12.85981 -12.81194 -12.64743 -12.51769 -12.47547 -12.12889 -12.04357 -11.55425 -11.47689 -11.09658 -10.90989 -10.78224 -10.45165 -10.36097 -10.05324 -9.62380 -8.99345 -7.95682 -5.23479 -0.03142 0.20011 1.48120 1.48676 1.58444 1.60688 2.17903 2.47314 2.55676 2.82829 3.37337 3.45346 3.67039 3.71499 3.79095 3.80284 3.83820 3.89997 4.02723 4.16831 4.26889 4.33699 4.39785 4.42399 4.45181 4.54370 4.68451 4.71776 4.74682 4.76704 4.78914 4.85021 4.93451 5.00325 5.00579 5.10881 5.12526 5.20964 5.29619 5.31290 5.36490 5.49825 5.56195 5.63917 5.67327 6.28468 6.48904 6.55319 6.95512 7.22107 7.33662 8.10890 8.33120 9.27676 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025903 B = 0.001878 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.685197 B =14909.504010 C =15031.929506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.134 3.866 3 C -0.185 4.185 4 C -0.021 4.021 5 C -0.117 4.117 6 C -0.149 4.149 7 C -0.092 4.092 8 C 0.517 3.483 9 O -0.580 6.580 10 N -0.716 5.716 11 C 0.141 3.859 12 C -0.100 4.100 13 H 0.083 0.917 14 C -0.153 4.153 15 C 0.142 3.858 16 H 0.058 0.942 17 N -0.719 5.719 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.294 1.294 26 C -0.135 4.135 27 C 0.308 3.692 28 O -0.491 6.491 29 N -0.541 5.541 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.168 0.832 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.413 0.587 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.103 0.897 47 H 0.057 0.943 48 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.230 3.575 5.491 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.003 4.003 3 C -0.204 4.204 4 C -0.028 4.028 5 C -0.173 4.173 6 C -0.153 4.153 7 C -0.132 4.132 8 C 0.305 3.695 9 O -0.460 6.460 10 N -0.368 5.368 11 C 0.018 3.982 12 C -0.119 4.119 13 H 0.102 0.898 14 C -0.193 4.193 15 C 0.032 3.968 16 H 0.076 0.924 17 N -0.357 5.357 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.800 3.200 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.221 1.221 26 C -0.175 4.175 27 C 0.129 3.871 28 O -0.300 6.300 29 N -0.262 5.262 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.186 0.814 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.249 0.751 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.122 0.878 47 H 0.076 0.924 48 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -28.063 2.684 5.365 28.697 hybrid contribution 2.037 0.240 0.025 2.051 sum -26.027 2.924 5.389 26.739 Atomic orbital electron populations 1.20825 0.86398 1.04424 1.04169 1.21598 0.98297 0.87105 0.93275 1.22156 0.93909 1.00210 1.04125 1.20479 0.94446 0.95427 0.92467 1.20931 0.99654 0.92519 1.04242 1.20279 0.96147 0.92928 1.05922 1.20551 0.91050 1.07642 0.93934 1.20805 0.82067 0.75164 0.91483 1.90701 1.56561 1.51481 1.47297 1.46009 1.06925 1.74182 1.09646 1.21267 0.92546 1.01620 0.82782 1.22483 0.92830 0.98088 0.98511 0.89830 1.23701 0.99065 0.95932 1.00615 1.21397 0.85737 0.95424 0.94243 0.92404 1.42290 1.06368 1.20549 1.66517 1.19703 0.88762 1.00068 1.28779 0.90628 1.25520 1.01293 0.98186 1.01673 1.69807 1.29258 1.18970 1.43814 0.85106 0.79849 0.78142 0.76859 1.19144 1.22190 1.22119 1.23348 0.97975 0.99608 0.96529 1.19106 0.86957 0.85489 0.95501 1.84651 1.76525 1.33688 1.35126 1.66986 1.10016 1.32308 1.16913 0.89058 0.88079 0.91162 0.81442 0.88091 0.91682 0.89354 0.85108 0.86110 0.75071 0.91659 0.91970 0.93257 0.89174 0.79297 0.94035 0.87829 0.92385 0.73007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.17 71.23 0.72 -0.48 16 2 C 0.13 2.62 6.78 42.50 0.29 2.91 16 3 C -0.18 -2.99 9.44 22.36 0.21 -2.78 16 4 C -0.02 -0.37 5.91 -19.69 -0.12 -0.48 16 5 C -0.12 -1.40 9.28 71.24 0.66 -0.74 16 6 C -0.15 -3.13 4.40 -19.67 -0.09 -3.21 16 7 C -0.09 -1.54 4.95 29.10 0.14 -1.40 16 8 C 0.52 11.31 7.49 87.66 0.66 11.97 16 9 O -0.58 -17.23 16.03 -3.06 -0.05 -17.28 16 10 N -0.72 -14.34 5.55 -463.07 -2.57 -16.91 16 11 C 0.14 3.25 5.51 86.38 0.48 3.72 16 12 C -0.10 -2.66 3.63 -10.26 -0.04 -2.70 16 13 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 14 C -0.15 -4.62 7.43 31.12 0.23 -4.39 16 15 C 0.14 5.25 4.56 45.52 0.21 5.46 16 16 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 17 N -0.72 -34.70 5.31 -320.46 -1.70 -36.41 16 18 C -0.24 -13.05 9.97 84.03 0.84 -12.21 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 21 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 22 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 C -0.14 -3.95 7.39 31.12 0.23 -3.72 16 27 C 0.31 7.60 7.72 84.78 0.65 8.26 16 28 O -0.49 -11.16 12.62 -89.95 -1.14 -12.29 16 29 N -0.54 -13.82 10.30 -296.99 -3.06 -16.88 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.69 8.08 -2.39 -0.02 0.67 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.06 0.90 6.55 -2.39 -0.02 0.88 16 36 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 37 H 0.13 1.51 6.83 -2.38 -0.02 1.49 16 38 H 0.12 1.82 7.55 -2.38 -0.02 1.81 16 39 H 0.41 6.84 8.47 -92.71 -0.79 6.05 16 40 H 0.07 1.55 7.84 -2.38 -0.02 1.53 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 2.35 7.90 -2.38 -0.02 2.33 16 44 H 0.37 19.32 7.90 -92.71 -0.73 18.58 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.10 2.50 8.10 -2.38 -0.02 2.48 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.41 6.95 9.06 -74.06 -0.67 6.28 16 Total: -1.00 -74.50 399.56 -1.84 -76.35 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -1.19 Total: 37.05 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.55 Total: -3.51 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -7.05 Total: -127.62 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -1.18 Total: -29.57 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -74.50 -1.84 -76.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691517289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.109 kcal (2) G-P(sol) polarization free energy of solvation -74.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds