Wall clock time and date at job start Tue Mar 31 2020 17:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35918 * 117.00359 * 2 1 4 4 C 1.38856 * 120.40078 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99891 * 179.97438 * 4 3 2 6 6 C 1.31684 * 121.94162 * 359.97438 * 5 4 3 7 7 C 1.39531 * 120.69173 * 0.02562 * 6 5 4 8 8 C 1.47846 * 120.53488 * 179.97438 * 7 6 5 9 9 O 1.21553 * 120.00208 * 135.30805 * 8 7 6 10 10 N 1.34775 * 120.00150 * 315.31276 * 8 7 6 11 11 C 1.47027 * 125.64920 * 354.25833 * 10 8 7 12 12 C 1.54322 * 107.27480 * 181.02287 * 11 10 8 13 13 C 1.55162 * 102.94072 * 22.19198 * 12 11 10 14 14 H 1.09001 * 111.03256 * 82.58806 * 13 12 11 15 15 C 1.52996 * 111.00458 * 206.42122 * 13 12 11 16 16 N 1.46500 * 109.47179 * 178.64925 * 15 13 12 17 17 C 1.46506 * 119.99441 * 89.99911 * 16 15 13 18 18 C 1.36933 * 120.00269 * 270.00691 * 16 15 13 19 19 H 1.07998 * 119.99752 * 334.16059 * 18 16 15 20 20 C 1.38812 * 119.99983 * 154.16847 * 18 16 15 21 21 N 1.31620 * 120.00207 * 359.89584 * 20 18 16 22 22 Si 1.86802 * 119.99995 * 179.89384 * 20 18 16 23 23 H 1.48504 * 109.46999 * 59.99778 * 22 20 18 24 24 H 1.48497 * 109.47629 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47169 * 300.00350 * 22 20 18 26 26 C 1.47423 * 125.65116 * 174.21856 * 10 8 7 27 27 C 1.38834 * 120.40740 * 180.27736 * 3 2 1 28 28 C 1.50695 * 120.88273 * 0.02562 * 27 3 2 29 29 H 1.08994 * 109.47455 * 300.00431 * 1 2 3 30 30 H 1.09001 * 109.46817 * 60.00542 * 1 2 3 31 31 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.50502 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.65951 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.88042 * 300.44628 * 11 10 8 35 35 H 1.09002 * 109.87754 * 61.45155 * 11 10 8 36 36 H 1.08998 * 110.71795 * 263.83357 * 12 11 10 37 37 H 1.08998 * 110.71811 * 140.55616 * 12 11 10 38 38 H 1.09003 * 109.46815 * 58.65611 * 15 13 12 39 39 H 1.08998 * 109.47039 * 298.65374 * 15 13 12 40 40 H 1.08994 * 109.47544 * 265.65408 * 17 16 15 41 41 H 1.09005 * 109.46643 * 145.65584 * 17 16 15 42 42 H 1.08995 * 109.47179 * 25.66104 * 17 16 15 43 43 H 0.96994 * 119.99656 * 179.97438 * 21 20 18 44 44 H 1.08994 * 110.36773 * 37.06491 * 26 10 8 45 45 H 1.09005 * 110.46044 * 274.78949 * 26 10 8 46 46 H 1.09009 * 109.47141 * 273.81945 * 28 27 3 47 47 H 1.09001 * 109.46995 * 33.81380 * 28 27 3 48 48 H 1.09001 * 109.47418 * 153.81525 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6891 0.0015 7 6 4.0200 2.5635 0.0021 8 6 5.4911 2.7102 0.0032 9 8 6.1696 2.0258 0.7441 10 7 6.0800 3.6028 -0.8171 11 6 5.3969 4.4050 -1.8424 12 6 6.4714 5.2603 -2.5463 13 6 7.7802 4.4768 -2.2621 14 1 7.9085 3.6591 -2.9714 15 6 8.9927 5.4097 -2.2800 16 7 10.2035 4.6427 -1.9767 17 6 10.9704 4.0254 -3.0617 18 6 10.6182 4.5027 -0.6793 19 1 10.3492 5.2458 0.0568 20 6 11.3846 3.4057 -0.3101 21 7 11.7109 2.4991 -1.2068 22 14 11.9529 3.2162 1.4592 23 1 10.7699 3.1450 2.3541 24 1 12.7507 1.9709 1.5923 25 1 12.7903 4.3828 1.8378 26 6 7.5158 3.9371 -0.8344 27 6 3.4320 1.2934 -0.0058 28 6 4.2809 0.0484 -0.0128 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 0.2197 2.3226 -0.0014 33 1 3.6367 4.6747 0.0023 34 1 4.9133 3.7483 -2.5656 35 1 4.6542 5.0508 -1.3738 36 1 6.5168 6.2581 -2.1100 37 1 6.2796 5.3150 -3.6179 38 1 8.8608 6.1913 -1.5318 39 1 9.0875 5.8633 -3.2666 40 1 10.6496 2.9918 -3.1911 41 1 12.0319 4.0481 -2.8148 42 1 10.8006 4.5771 -3.9862 43 1 12.2467 1.7329 -0.9489 44 1 8.1150 3.0458 -0.6487 45 1 7.7374 4.7038 -0.0920 46 1 4.4335 -0.2931 1.0111 47 1 3.7777 -0.7313 -0.5846 48 1 5.2456 0.2688 -0.4699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691969032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:19 Heat of formation + Delta-G solvation = -2.914960 kcal Electronic energy + Delta-G solvation = -29353.164333 eV Core-core repulsion = 25409.728770 eV Total energy + Delta-G solvation = -3943.435563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.20627 -39.70231 -38.25673 -37.40614 -35.32294 -33.89636 -32.42090 -31.06269 -30.34402 -28.70071 -28.08846 -27.89537 -25.84578 -25.75536 -24.12903 -22.68131 -22.46472 -21.14922 -19.76635 -19.43133 -18.06827 -17.68948 -16.86374 -16.62575 -16.48674 -16.24038 -15.65172 -15.08606 -14.79551 -14.51629 -14.25734 -13.96007 -13.75862 -13.46602 -13.11447 -12.98788 -12.93502 -12.91405 -12.76091 -12.39918 -12.23768 -12.04824 -11.90924 -11.79569 -11.76911 -11.17537 -10.97904 -10.82943 -10.66131 -10.34847 -10.29243 -10.24431 -10.03662 -9.93183 -9.72451 -9.61363 -9.40708 -8.72323 -8.46396 -8.32956 -6.69395 -5.69110 -3.17190 0.53376 0.98040 2.63454 2.86902 3.23020 3.44660 3.49951 3.52407 3.54511 4.12031 4.26318 4.40304 4.53584 4.54521 4.64369 4.73443 4.83197 4.88092 5.01922 5.08126 5.15146 5.19453 5.34326 5.47463 5.54203 5.61172 5.65107 5.65179 5.80164 5.95727 5.99334 6.02899 6.05453 6.21348 6.24166 6.27756 6.48434 6.54875 6.66557 6.80715 6.83617 6.86632 6.99526 7.48232 7.59501 7.74016 7.79835 7.87257 8.29780 8.46073 9.29674 9.90692 10.40499 11.35543 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003093 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.841360 B = 9049.788921 C = 9956.130440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.069 3.931 4 C 0.032 3.968 5 N -0.455 5.455 6 C 0.097 3.903 7 C -0.136 4.136 8 C 0.573 3.427 9 O -0.520 6.520 10 N -0.611 5.611 11 C 0.097 3.903 12 C -0.129 4.129 13 C -0.115 4.115 14 H 0.075 0.925 15 C 0.163 3.837 16 N -0.604 5.604 17 C 0.166 3.834 18 C -0.254 4.254 19 H 0.066 0.934 20 C 0.009 3.991 21 N -0.907 5.907 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.129 3.871 27 C -0.023 4.023 28 C -0.110 4.110 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.025 0.975 41 H 0.049 0.951 42 H -0.009 1.009 43 H 0.253 0.747 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.750 0.001 -2.453 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.021 3.979 4 C -0.125 4.125 5 N -0.164 5.164 6 C -0.062 4.062 7 C -0.141 4.141 8 C 0.359 3.641 9 O -0.396 6.396 10 N -0.345 5.345 11 C -0.026 4.026 12 C -0.168 4.168 13 C -0.138 4.138 14 H 0.094 0.906 15 C 0.035 3.965 16 N -0.326 5.326 17 C 0.022 3.978 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.189 4.189 21 N -0.552 5.552 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.008 3.992 27 C -0.032 4.032 28 C -0.166 4.166 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.178 0.822 33 H 0.182 0.818 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.010 0.990 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.699 -0.055 -1.992 22.786 hybrid contribution 0.369 -0.874 0.977 1.362 sum -22.329 -0.930 -1.015 22.372 Atomic orbital electron populations 1.23139 0.77995 1.04469 1.01549 1.86104 1.21506 1.25574 1.88591 1.19715 0.92185 0.86043 0.99934 1.23014 1.00568 0.87112 1.01813 1.67543 1.11810 1.25923 1.11135 1.22931 0.88391 0.98317 0.96528 1.20835 0.95116 0.93755 1.04392 1.17523 0.86059 0.79774 0.80738 1.90849 1.64471 1.43798 1.40498 1.48645 1.11020 1.39702 1.35116 1.22169 0.95928 0.94025 0.90480 1.22715 0.94938 0.98902 1.00246 1.23184 0.95098 0.99642 0.95849 0.90638 1.20792 0.85080 0.92540 0.98081 1.43928 1.23287 1.61441 1.03954 1.20835 0.96403 0.94733 0.85860 1.19063 1.29974 1.03521 0.85838 0.91630 1.25110 1.00759 0.95757 0.97292 1.70035 1.40779 1.12352 1.32020 0.86426 0.78490 0.77022 0.85219 1.20628 1.21622 1.21114 1.22290 0.77678 1.01869 0.97338 1.19750 0.90857 0.95680 0.96866 1.20735 0.98967 0.93184 1.03700 0.92369 0.92364 0.87794 0.82215 0.81754 0.91947 0.91635 0.90563 0.90494 0.93581 0.93946 0.95683 0.93225 0.99043 0.93697 0.89039 0.91281 0.89781 0.90814 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -3.06 9.74 -19.48 -0.19 -3.25 16 3 C 0.07 0.80 6.68 -39.13 -0.26 0.54 16 4 C 0.03 0.34 10.21 -17.30 -0.18 0.16 16 5 N -0.45 -5.56 10.34 -12.79 -0.13 -5.69 16 6 C 0.10 1.23 9.61 -17.13 -0.16 1.06 16 7 C -0.14 -1.97 5.39 -104.84 -0.56 -2.54 16 8 C 0.57 10.07 6.66 -12.33 -0.08 9.99 16 9 O -0.52 -11.20 15.66 5.32 0.08 -11.12 16 10 N -0.61 -10.07 3.33 -171.63 -0.57 -10.64 16 11 C 0.10 1.21 5.94 -3.06 -0.02 1.19 16 12 C -0.13 -1.60 6.42 -24.89 -0.16 -1.76 16 13 C -0.12 -1.97 3.29 -88.47 -0.29 -2.26 16 14 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 15 C 0.16 3.09 5.25 -4.04 -0.02 3.07 16 16 N -0.60 -14.58 2.87 -181.12 -0.52 -15.10 16 17 C 0.17 4.03 8.99 59.85 0.54 4.57 16 18 C -0.25 -6.78 8.72 -15.06 -0.13 -6.91 16 19 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 20 C 0.01 0.26 5.32 -17.43 -0.09 0.17 16 21 N -0.91 -26.33 10.28 55.49 0.57 -25.76 16 22 Si 0.90 22.35 29.55 -169.99 -5.02 17.32 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.13 2.48 5.39 -2.53 -0.01 2.47 16 27 C -0.02 -0.31 5.96 -103.76 -0.62 -0.93 16 28 C -0.11 -1.49 8.93 36.00 0.32 -1.17 16 29 H 0.06 0.26 7.68 -51.93 -0.40 -0.14 16 30 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.16 1.15 6.30 -52.49 -0.33 0.82 16 33 H 0.17 1.81 6.18 -52.49 -0.32 1.49 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.68 5.74 -51.93 -0.30 0.38 16 36 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.85 8.00 -51.93 -0.42 0.43 16 39 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 40 H 0.02 0.66 7.43 -51.93 -0.39 0.27 16 41 H 0.05 1.31 7.11 -51.93 -0.37 0.94 16 42 H -0.01 -0.19 7.84 -51.93 -0.41 -0.60 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.09 2.21 7.98 -51.93 -0.41 1.79 16 45 H 0.07 1.37 8.00 -51.93 -0.42 0.96 16 46 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 47 H 0.07 0.87 7.74 -51.93 -0.40 0.47 16 48 H 0.08 1.24 6.54 -51.93 -0.34 0.90 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -32.74 382.62 -8.15 -40.89 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.38 Total: -1.20 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -0.74 Total: 8.78 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.65 Total: -57.19 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.11 Total: -14.37 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.74 -8.15 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691969032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.971 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds