Wall clock time and date at job start Tue Mar 31 2020 17:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35918 * 117.00359 * 2 1 4 4 C 1.38856 * 120.40078 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99891 * 179.97438 * 4 3 2 6 6 C 1.31684 * 121.94162 * 359.97438 * 5 4 3 7 7 C 1.39531 * 120.69173 * 0.02562 * 6 5 4 8 8 C 1.47846 * 120.53488 * 179.97438 * 7 6 5 9 9 O 1.21553 * 120.00208 * 135.30805 * 8 7 6 10 10 N 1.34775 * 120.00150 * 315.31276 * 8 7 6 11 11 C 1.47027 * 125.64920 * 354.25833 * 10 8 7 12 12 C 1.54322 * 107.27480 * 181.02287 * 11 10 8 13 13 C 1.55162 * 102.94072 * 22.19198 * 12 11 10 14 14 H 1.09001 * 111.03256 * 82.58806 * 13 12 11 15 15 C 1.52996 * 111.00458 * 206.42122 * 13 12 11 16 16 N 1.46500 * 109.47179 * 178.64925 * 15 13 12 17 17 C 1.46506 * 119.99441 * 89.99911 * 16 15 13 18 18 C 1.36933 * 120.00269 * 270.00691 * 16 15 13 19 19 H 1.07998 * 119.99752 * 334.16059 * 18 16 15 20 20 C 1.38812 * 119.99983 * 154.16847 * 18 16 15 21 21 N 1.31620 * 120.00207 * 359.89584 * 20 18 16 22 22 Si 1.86802 * 119.99995 * 179.89384 * 20 18 16 23 23 H 1.48504 * 109.46999 * 59.99778 * 22 20 18 24 24 H 1.48497 * 109.47629 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47169 * 300.00350 * 22 20 18 26 26 C 1.47423 * 125.65116 * 174.21856 * 10 8 7 27 27 C 1.38834 * 120.40740 * 180.27736 * 3 2 1 28 28 C 1.50695 * 120.88273 * 0.02562 * 27 3 2 29 29 H 1.08994 * 109.47455 * 300.00431 * 1 2 3 30 30 H 1.09001 * 109.46817 * 60.00542 * 1 2 3 31 31 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.50502 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.65951 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.88042 * 300.44628 * 11 10 8 35 35 H 1.09002 * 109.87754 * 61.45155 * 11 10 8 36 36 H 1.08998 * 110.71795 * 263.83357 * 12 11 10 37 37 H 1.08998 * 110.71811 * 140.55616 * 12 11 10 38 38 H 1.09003 * 109.46815 * 58.65611 * 15 13 12 39 39 H 1.08998 * 109.47039 * 298.65374 * 15 13 12 40 40 H 1.08994 * 109.47544 * 265.65408 * 17 16 15 41 41 H 1.09005 * 109.46643 * 145.65584 * 17 16 15 42 42 H 1.08995 * 109.47179 * 25.66104 * 17 16 15 43 43 H 0.96994 * 119.99656 * 179.97438 * 21 20 18 44 44 H 1.08994 * 110.36773 * 37.06491 * 26 10 8 45 45 H 1.09005 * 110.46044 * 274.78949 * 26 10 8 46 46 H 1.09009 * 109.47141 * 273.81945 * 28 27 3 47 47 H 1.09001 * 109.46995 * 33.81380 * 28 27 3 48 48 H 1.09001 * 109.47418 * 153.81525 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8846 3.5621 0.0000 6 6 3.1953 3.6891 0.0015 7 6 4.0200 2.5635 0.0021 8 6 5.4911 2.7102 0.0032 9 8 6.1696 2.0258 0.7441 10 7 6.0800 3.6028 -0.8171 11 6 5.3969 4.4050 -1.8424 12 6 6.4714 5.2603 -2.5463 13 6 7.7802 4.4768 -2.2621 14 1 7.9085 3.6591 -2.9714 15 6 8.9927 5.4097 -2.2800 16 7 10.2035 4.6427 -1.9767 17 6 10.9704 4.0254 -3.0617 18 6 10.6182 4.5027 -0.6793 19 1 10.3492 5.2458 0.0568 20 6 11.3846 3.4057 -0.3101 21 7 11.7109 2.4991 -1.2068 22 14 11.9529 3.2162 1.4592 23 1 10.7699 3.1450 2.3541 24 1 12.7507 1.9709 1.5923 25 1 12.7903 4.3828 1.8378 26 6 7.5158 3.9371 -0.8344 27 6 3.4320 1.2934 -0.0058 28 6 4.2809 0.0484 -0.0128 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 0.2197 2.3226 -0.0014 33 1 3.6367 4.6747 0.0023 34 1 4.9133 3.7483 -2.5656 35 1 4.6542 5.0508 -1.3738 36 1 6.5168 6.2581 -2.1100 37 1 6.2796 5.3150 -3.6179 38 1 8.8608 6.1913 -1.5318 39 1 9.0875 5.8633 -3.2666 40 1 10.6496 2.9918 -3.1911 41 1 12.0319 4.0481 -2.8148 42 1 10.8006 4.5771 -3.9862 43 1 12.2467 1.7329 -0.9489 44 1 8.1150 3.0458 -0.6487 45 1 7.7374 4.7038 -0.0920 46 1 4.4335 -0.2931 1.0111 47 1 3.7777 -0.7313 -0.5846 48 1 5.2456 0.2688 -0.4699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691969032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:19 Heat of formation + Delta-G solvation = -24.612839 kcal Electronic energy + Delta-G solvation = -29354.105223 eV Core-core repulsion = 25409.728770 eV Total energy + Delta-G solvation = -3944.376454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19419 -40.88397 -39.20635 -38.74404 -37.11274 -34.91262 -34.02653 -32.60268 -31.57045 -30.04575 -29.07493 -28.51314 -27.87323 -27.29330 -25.36728 -23.87628 -23.46119 -22.78791 -21.07689 -20.73150 -19.09213 -18.82935 -18.60211 -17.70154 -17.49588 -17.12559 -16.91772 -16.71950 -16.19362 -15.82242 -15.33377 -15.14553 -15.09824 -14.80616 -14.73868 -14.47016 -14.06447 -13.98263 -13.90081 -13.81978 -13.48595 -13.28272 -13.03434 -12.88928 -12.79675 -12.77646 -12.62652 -12.40820 -12.33347 -12.11270 -12.05705 -11.77794 -11.56341 -11.46197 -11.37427 -10.67236 -10.58451 -10.52763 -9.71410 -9.54479 -8.70291 -7.82109 -5.28879 -0.45736 0.03523 1.40558 1.45817 1.47301 1.48428 1.78814 2.24118 2.49538 2.55638 3.20641 3.35154 3.37037 3.41082 3.54050 3.62167 3.76144 3.90441 4.02975 4.07394 4.16405 4.30791 4.35946 4.40369 4.41496 4.51880 4.54747 4.58464 4.71241 4.77669 4.78050 4.88241 4.92856 4.95412 4.98872 5.03614 5.04582 5.11534 5.26572 5.27014 5.36537 5.43813 5.53659 5.66898 5.82554 6.12372 6.37573 6.43196 6.67428 6.95119 7.20673 7.92924 8.35489 9.21280 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016201 B = 0.003093 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.841360 B = 9049.788921 C = 9956.130440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.076 3.924 4 C 0.046 3.954 5 N -0.459 5.459 6 C 0.102 3.898 7 C -0.150 4.150 8 C 0.568 3.432 9 O -0.576 6.576 10 N -0.611 5.611 11 C 0.093 3.907 12 C -0.112 4.112 13 C -0.108 4.108 14 H 0.054 0.946 15 C 0.160 3.840 16 N -0.621 5.621 17 C 0.180 3.820 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.048 4.048 21 N -0.937 5.937 22 Si 0.950 3.050 23 H -0.288 1.288 24 H -0.297 1.297 25 H -0.270 1.270 26 C 0.137 3.863 27 C -0.045 4.045 28 C -0.102 4.102 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.200 0.800 33 H 0.181 0.819 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.072 0.928 40 H -0.006 1.006 41 H 0.019 0.981 42 H 0.029 0.971 43 H 0.243 0.757 44 H 0.028 0.972 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.792 2.213 -3.407 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.028 3.972 4 C -0.112 4.112 5 N -0.168 5.168 6 C -0.056 4.056 7 C -0.155 4.155 8 C 0.357 3.643 9 O -0.457 6.457 10 N -0.343 5.343 11 C -0.028 4.028 12 C -0.150 4.150 13 C -0.130 4.130 14 H 0.073 0.927 15 C 0.034 3.966 16 N -0.344 5.344 17 C 0.035 3.965 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.243 4.243 21 N -0.584 5.584 22 Si 0.779 3.221 23 H -0.215 1.215 24 H -0.224 1.224 25 H -0.196 1.196 26 C 0.015 3.985 27 C -0.054 4.054 28 C -0.159 4.159 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.216 0.784 33 H 0.198 0.802 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.013 0.987 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -26.790 2.216 -2.977 27.046 hybrid contribution 1.447 -1.581 1.247 2.479 sum -25.343 0.635 -1.730 25.410 Atomic orbital electron populations 1.23534 0.75358 1.06375 1.03051 1.86105 1.24171 1.24794 1.88145 1.19669 0.91270 0.87233 0.99026 1.23614 1.02198 0.86054 0.99301 1.67660 1.11192 1.26576 1.11336 1.23065 0.88480 0.98117 0.95951 1.20562 0.92896 0.95050 1.07014 1.18105 0.87461 0.78906 0.79833 1.90807 1.66070 1.45948 1.42850 1.48691 1.10052 1.39877 1.35662 1.22486 0.96351 0.94198 0.89814 1.22714 0.91015 0.98830 1.02419 1.22923 0.97250 0.99257 0.93590 0.92727 1.21018 0.83478 0.92218 0.99911 1.44185 1.25502 1.61653 1.03037 1.20542 0.94614 0.93860 0.87434 1.19323 1.28242 1.02771 0.87058 0.91294 1.25732 1.02247 0.96238 1.00089 1.70200 1.42246 1.12829 1.33163 0.85602 0.77688 0.76982 0.81830 1.21522 1.22355 1.19604 1.21946 0.79009 0.98736 0.98846 1.19837 0.92270 0.95124 0.98162 1.20603 0.97862 0.94252 1.03146 0.90929 0.90625 0.85953 0.78382 0.80224 0.90814 0.88461 0.88360 0.87428 0.92562 0.90992 0.98726 0.96193 0.95213 0.94704 0.95294 0.92191 0.90623 0.89126 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.19 16 2 O -0.32 -5.61 9.74 -92.63 -0.90 -6.51 16 3 C 0.08 1.60 6.68 22.56 0.15 1.75 16 4 C 0.05 0.80 10.21 84.83 0.87 1.67 16 5 N -0.46 -9.62 10.34 -194.39 -2.01 -11.63 16 6 C 0.10 2.34 9.61 85.03 0.82 3.15 16 7 C -0.15 -4.32 5.39 -20.01 -0.11 -4.43 16 8 C 0.57 20.88 6.66 86.79 0.58 21.46 16 9 O -0.58 -26.93 15.66 -3.88 -0.06 -27.00 16 10 N -0.61 -20.35 3.33 -815.19 -2.71 -23.06 16 11 C 0.09 2.06 5.94 86.73 0.52 2.57 16 12 C -0.11 -2.33 6.42 31.78 0.20 -2.13 16 13 C -0.11 -3.60 3.29 -9.40 -0.03 -3.64 16 14 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 15 C 0.16 5.79 5.25 86.38 0.45 6.24 16 16 N -0.62 -30.23 2.87 -726.94 -2.09 -32.32 16 17 C 0.18 8.92 8.99 127.77 1.15 10.07 16 18 C -0.24 -13.27 8.72 84.03 0.73 -12.54 16 19 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 20 C -0.05 -2.79 5.32 84.86 0.45 -2.34 16 21 N -0.94 -57.27 10.28 21.65 0.22 -57.05 16 22 Si 0.95 47.84 29.55 68.60 2.03 49.86 16 23 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 24 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 25 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 26 C 0.14 5.49 5.39 86.86 0.47 5.95 16 27 C -0.05 -1.23 5.96 -19.31 -0.12 -1.35 16 28 C -0.10 -2.95 8.93 71.23 0.64 -2.31 16 29 H 0.07 0.33 7.68 -2.39 -0.02 0.32 16 30 H 0.08 0.30 7.67 -2.39 -0.02 0.29 16 31 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.20 1.82 6.30 -2.91 -0.02 1.80 16 33 H 0.18 3.41 6.18 -2.91 -0.02 3.39 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.61 5.74 -2.39 -0.01 1.59 16 36 H 0.10 1.71 8.04 -2.39 -0.02 1.69 16 37 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.94 8.00 -2.39 -0.02 1.92 16 39 H 0.07 2.21 7.86 -2.39 -0.02 2.19 16 40 H -0.01 -0.31 7.43 -2.39 -0.02 -0.33 16 41 H 0.02 1.07 7.11 -2.38 -0.02 1.05 16 42 H 0.03 1.22 7.84 -2.39 -0.02 1.20 16 43 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.03 1.50 7.98 -2.39 -0.02 1.48 16 45 H 0.06 2.47 8.00 -2.38 -0.02 2.45 16 46 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.09 2.19 7.74 -2.39 -0.02 2.17 16 48 H 0.05 1.68 6.54 -2.39 -0.02 1.66 16 Total: -1.00 -78.05 382.62 3.32 -74.73 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.96 Total: 7.67 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 7.88 Total: 25.32 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -6.59 Total: -124.07 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.96 Total: -33.51 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -78.05 3.32 -74.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691969032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.117 kcal (2) G-P(sol) polarization free energy of solvation -78.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds