Wall clock time and date at job start Tue Mar 31 2020 17:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38398 * 120.85351 * 2 1 4 4 C 1.38310 * 119.30519 * 180.25743 * 3 2 1 5 5 N 1.31949 * 121.07968 * 359.76244 * 4 3 2 6 6 C 1.31668 * 121.88258 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.56388 * 359.97438 * 6 5 4 8 8 C 1.47840 * 120.56373 * 179.97438 * 7 6 5 9 9 O 1.21557 * 119.99920 * 131.80934 * 8 7 6 10 10 N 1.34772 * 120.00113 * 311.82098 * 8 7 6 11 11 C 1.46925 * 120.62926 * 354.65905 * 10 8 7 12 12 C 1.53191 * 108.77629 * 233.59249 * 11 10 8 13 13 C 1.53039 * 109.31266 * 305.36109 * 12 11 10 14 14 C 1.53040 * 109.53568 * 61.36401 * 13 12 11 15 15 H 1.09001 * 109.52140 * 58.60390 * 14 13 12 16 16 N 1.46506 * 109.49601 * 178.68211 * 14 13 12 17 17 C 1.36940 * 119.99683 * 59.84389 * 16 14 13 18 18 H 1.07993 * 119.99917 * 38.15045 * 17 16 14 19 19 C 1.38811 * 119.99583 * 218.42299 * 17 16 14 20 20 N 1.31617 * 120.00118 * 19.50480 * 19 17 16 21 21 Si 1.86800 * 119.99833 * 199.49833 * 19 17 16 22 22 H 1.48498 * 109.47145 * 90.00586 * 21 19 17 23 23 H 1.48498 * 109.47353 * 210.00272 * 21 19 17 24 24 H 1.48501 * 109.47213 * 330.00274 * 21 19 17 25 25 C 1.46501 * 119.99994 * 239.83716 * 16 14 13 26 26 C 1.52996 * 109.47225 * 273.85672 * 25 16 14 27 27 O 1.42903 * 109.46845 * 65.00392 * 26 25 16 28 28 C 1.46922 * 120.63695 * 174.63909 * 10 8 7 29 29 H 1.09001 * 109.46895 * 272.45222 * 1 2 3 30 30 H 1.08999 * 109.47761 * 32.45909 * 1 2 3 31 31 H 1.09005 * 109.46715 * 152.46173 * 1 2 3 32 32 H 1.07999 * 120.34852 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.45937 * 179.74779 * 4 3 2 34 34 H 1.08000 * 119.72401 * 179.97438 * 6 5 4 35 35 H 1.09006 * 109.58815 * 353.37691 * 11 10 8 36 36 H 1.08995 * 109.58992 * 113.79844 * 11 10 8 37 37 H 1.08999 * 109.50125 * 65.31420 * 12 11 10 38 38 H 1.09007 * 109.49518 * 185.37978 * 12 11 10 39 39 H 1.09004 * 109.46223 * 301.34541 * 13 12 11 40 40 H 1.09003 * 109.46537 * 181.38907 * 13 12 11 41 41 H 0.97002 * 120.00139 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47102 * 33.86084 * 25 16 14 43 43 H 1.09003 * 109.46544 * 153.86076 * 25 16 14 44 44 H 1.09002 * 109.47039 * 184.99892 * 26 25 16 45 45 H 1.09002 * 109.47338 * 305.00270 * 26 25 16 46 46 H 0.96706 * 113.99871 * 179.97438 * 27 26 25 47 47 H 1.09003 * 109.58380 * 6.62460 * 28 10 8 48 48 H 1.08996 * 109.70994 * 246.26816 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1508 -0.0054 5 7 4.2498 0.0027 -0.0059 6 6 3.6198 -1.1535 -0.0018 7 6 2.2250 -1.2017 0.0038 8 6 1.5177 -2.4998 0.0079 9 8 0.6138 -2.6970 0.7964 10 7 1.8752 -3.4648 -0.8624 11 6 2.8846 -3.2029 -1.8973 12 6 2.2983 -3.5737 -3.2631 13 6 1.7991 -5.0198 -3.2238 14 6 0.6950 -5.1517 -2.1722 15 1 -0.1216 -4.4715 -2.4142 16 7 0.1960 -6.5291 -2.1573 17 6 1.0487 -7.5632 -1.8767 18 1 1.8151 -7.4424 -1.1255 19 6 0.9314 -8.7648 -2.5617 20 7 0.2927 -8.8071 -3.7117 21 14 1.6804 -10.3218 -1.8514 22 1 0.6817 -11.0023 -0.9885 23 1 2.0785 -11.2289 -2.9577 24 1 2.8762 -9.9719 -1.0435 25 6 -1.2152 -6.8001 -2.4426 26 6 -2.0296 -6.6729 -1.1536 27 8 -1.9894 -5.3196 -0.6964 28 6 1.2632 -4.7988 -0.7941 29 1 -0.3633 0.0440 1.0267 30 1 -0.3634 0.8671 -0.5515 31 1 -0.3633 -0.9113 -0.4752 32 1 1.6965 2.1345 -0.0004 33 1 4.1557 2.0764 -0.0096 34 1 4.1871 -2.0725 -0.0027 35 1 3.1510 -2.1459 -1.8888 36 1 3.7713 -3.8067 -1.7041 37 1 1.4669 -2.9080 -3.4951 38 1 3.0681 -3.4747 -4.0285 39 1 2.6257 -5.6826 -2.9676 40 1 1.4037 -5.2943 -4.2019 41 1 0.2111 -9.6467 -4.1906 42 1 -1.5819 -6.0823 -3.1764 43 1 -1.3182 -7.8101 -2.8393 44 1 -3.0630 -6.9606 -1.3469 45 1 -1.6070 -7.3269 -0.3908 46 1 -2.4862 -5.1649 0.1188 47 1 0.4596 -4.7948 -0.0577 48 1 2.0157 -5.5343 -0.5099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692230755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:13 Heat of formation + Delta-G solvation = -25.742470 kcal Electronic energy + Delta-G solvation = -30269.598917 eV Core-core repulsion = 26325.173479 eV Total energy + Delta-G solvation = -3944.425438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.89284 -39.19726 -37.40614 -36.21436 -34.68966 -33.98103 -32.49208 -31.44721 -31.22470 -29.59290 -28.11020 -27.13184 -25.51873 -24.27406 -23.70340 -22.55953 -21.96525 -20.83197 -19.89534 -18.91342 -17.38789 -16.75173 -16.66445 -16.48888 -16.25789 -15.71644 -15.14602 -14.52440 -14.49000 -14.37278 -14.13632 -13.85805 -13.74828 -13.43849 -13.07261 -13.00737 -12.93568 -12.85014 -12.74408 -12.48561 -12.20151 -11.94781 -11.85682 -11.43088 -11.16370 -10.87249 -10.73395 -10.55304 -10.35843 -10.22305 -10.14294 -9.96076 -9.85407 -9.66358 -9.53231 -9.44237 -9.16840 -9.10352 -8.56668 -8.22641 -6.55982 -5.83436 -3.41229 0.66316 1.01625 2.84560 3.22051 3.32713 3.41054 3.42299 3.62836 4.19043 4.44067 4.48253 4.51507 4.61077 4.86097 5.04363 5.20383 5.21241 5.28014 5.32328 5.33698 5.44002 5.46136 5.52954 5.56345 5.69556 5.79885 5.92909 5.98138 6.07639 6.10128 6.16822 6.21131 6.31036 6.41001 6.42100 6.44780 6.58354 6.64693 6.78333 6.88778 7.05686 7.16806 7.28694 7.55421 7.68835 7.72381 7.78898 8.36951 8.40099 8.49333 9.16489 9.77890 10.39070 11.17652 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.003551 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.726166 B = 7883.037694 C = 8632.422025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.006 3.994 3 C -0.181 4.181 4 C 0.112 3.888 5 N -0.491 5.491 6 C 0.134 3.866 7 C -0.175 4.175 8 C 0.559 3.441 9 O -0.531 6.531 10 N -0.595 5.595 11 C 0.103 3.897 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.178 3.822 15 H 0.055 0.945 16 N -0.571 5.571 17 C -0.256 4.256 18 H 0.060 0.940 19 C 0.013 3.987 20 N -0.889 5.889 21 Si 0.895 3.105 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.153 3.847 26 C 0.053 3.947 27 O -0.566 6.566 28 C 0.105 3.895 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.106 0.894 44 H 0.021 0.979 45 H 0.040 0.960 46 H 0.357 0.643 47 H 0.094 0.906 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 16.798 4.037 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.003 4.003 3 C -0.201 4.201 4 C -0.044 4.044 5 N -0.200 5.200 6 C -0.024 4.024 7 C -0.180 4.180 8 C 0.345 3.655 9 O -0.408 6.408 10 N -0.327 5.327 11 C -0.020 4.020 12 C -0.171 4.171 13 C -0.163 4.163 14 C 0.070 3.930 15 H 0.073 0.927 16 N -0.290 5.290 17 C -0.386 4.386 18 H 0.078 0.922 19 C -0.187 4.187 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.203 1.203 25 C 0.027 3.973 26 C -0.027 4.027 27 O -0.369 6.369 28 C -0.018 4.018 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.178 0.822 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.124 0.876 44 H 0.039 0.961 45 H 0.058 0.942 46 H 0.201 0.799 47 H 0.112 0.888 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.007 16.580 3.760 17.265 hybrid contribution -0.793 -1.065 0.762 1.531 sum 2.214 15.514 4.522 16.311 Atomic orbital electron populations 1.20894 0.89421 1.03600 1.03608 1.20404 0.97247 0.91432 0.91191 1.21998 0.95577 0.98514 1.04019 1.22891 0.91718 0.96391 0.93390 1.67709 1.40760 0.98256 1.13301 1.23030 0.90318 0.96604 0.92429 1.21018 0.95536 0.94716 1.06728 1.18017 0.82997 0.83065 0.81407 1.90778 1.29629 1.80626 1.39816 1.48168 1.40707 1.13029 1.30777 1.21915 0.91117 1.00756 0.88224 1.21951 1.00462 0.99254 0.95415 1.21965 1.00342 0.93055 1.00955 1.20499 0.93888 0.87746 0.90897 0.92696 1.43641 1.03904 1.00186 1.81255 1.18988 1.13240 0.91654 1.14713 0.92213 1.25192 0.99446 0.99532 0.94512 1.69970 1.45230 1.25544 1.12430 0.86411 0.79171 0.83575 0.78326 1.21375 1.21772 1.20266 1.21027 0.82775 1.02654 0.90849 1.23192 0.97317 0.82216 0.99992 1.86600 1.76299 1.29119 1.44863 1.22349 0.98293 0.79544 1.01619 0.89692 0.91099 0.90240 0.84295 0.82463 0.82176 0.90667 0.91132 0.92317 0.91427 0.91440 0.91951 0.93527 0.95389 0.87628 0.96072 0.94188 0.79852 0.88781 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.19 36.01 0.33 -1.00 16 2 C 0.01 0.07 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -1.69 9.81 -39.50 -0.39 -2.08 16 4 C 0.11 1.07 11.17 -17.47 -0.20 0.88 16 5 N -0.49 -5.86 10.35 -12.91 -0.13 -6.00 16 6 C 0.13 1.66 8.72 -17.13 -0.15 1.51 16 7 C -0.17 -2.38 4.85 -104.82 -0.51 -2.89 16 8 C 0.56 9.27 6.40 -12.33 -0.08 9.19 16 9 O -0.53 -10.40 15.13 5.32 0.08 -10.32 16 10 N -0.59 -9.76 2.97 -173.89 -0.52 -10.28 16 11 C 0.10 1.41 5.26 -3.71 -0.02 1.39 16 12 C -0.13 -1.95 6.08 -26.61 -0.16 -2.11 16 13 C -0.12 -2.36 5.11 -26.69 -0.14 -2.50 16 14 C 0.18 3.69 2.19 -67.81 -0.15 3.54 16 15 H 0.05 1.21 7.71 -51.93 -0.40 0.81 16 16 N -0.57 -13.46 2.35 -165.52 -0.39 -13.85 16 17 C -0.26 -6.53 8.22 -15.06 -0.12 -6.65 16 18 H 0.06 1.54 6.75 -52.49 -0.35 1.19 16 19 C 0.01 0.35 4.96 -17.43 -0.09 0.26 16 20 N -0.89 -24.26 11.47 55.49 0.64 -23.62 16 21 Si 0.90 20.77 29.60 -169.99 -5.03 15.74 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.15 3.54 5.62 -4.04 -0.02 3.51 16 26 C 0.05 1.05 7.39 37.16 0.27 1.32 16 27 O -0.57 -10.82 12.33 -35.23 -0.43 -11.25 16 28 C 0.10 2.04 5.77 -3.71 -0.02 2.02 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.08 1.09 6.71 -51.93 -0.35 0.74 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.16 1.81 7.31 -52.49 -0.38 1.42 16 35 H 0.08 0.91 5.11 -51.93 -0.27 0.65 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.03 0.64 8.00 -51.93 -0.42 0.23 16 43 H 0.11 2.69 5.56 -51.93 -0.29 2.40 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.36 5.31 9.12 45.56 0.42 5.73 16 47 H 0.09 2.04 6.42 -51.93 -0.33 1.70 16 48 H 0.07 1.36 6.80 -51.93 -0.35 1.01 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -30.48 378.93 -8.62 -39.10 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.49 Total: 8.91 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.05 Total: 5.86 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.40 Total: -53.74 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.35 Total: -21.57 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.48 -8.62 -39.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692230755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.356 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds