Wall clock time and date at job start Tue Mar 31 2020 17:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38349 * 119.40696 * 2 1 4 4 C 1.38342 * 119.45583 * 179.71717 * 3 2 1 5 5 C 1.50712 * 120.82671 * 180.27229 * 4 3 2 6 6 C 1.39983 * 118.35199 * 0.56530 * 4 3 2 7 7 C 1.47520 * 120.60235 * 179.71229 * 6 4 3 8 8 O 1.21593 * 119.99926 * 269.72071 * 7 6 4 9 9 N 1.34777 * 120.00124 * 89.72197 * 7 6 4 10 10 C 1.46498 * 119.99828 * 180.27945 * 9 7 6 11 11 H 1.09003 * 110.01930 * 34.65556 * 10 9 7 12 12 C 1.53870 * 110.03042 * 273.26671 * 10 9 7 13 13 C 1.54269 * 106.59908 * 240.71749 * 12 10 9 14 14 C 1.54882 * 104.19661 * 23.60940 * 13 12 10 15 15 C 1.54265 * 110.03088 * 156.10299 * 10 9 7 16 16 H 1.09009 * 110.48258 * 214.35306 * 15 10 9 17 17 C 1.53000 * 110.48865 * 336.99012 * 15 10 9 18 18 N 1.46492 * 109.47191 * 185.00093 * 17 15 10 19 19 C 1.36939 * 120.00106 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00073 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00445 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00174 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99669 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47128 * 89.99865 * 23 21 19 25 25 H 1.48494 * 109.46838 * 209.99597 * 23 21 19 26 26 H 1.48505 * 109.47258 * 329.99589 * 23 21 19 27 27 C 1.40285 * 118.79905 * 359.43581 * 6 4 3 28 28 O 1.35431 * 119.79859 * 180.27641 * 27 6 4 29 29 N 1.31878 * 119.40556 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47390 * 269.98077 * 1 2 3 31 31 H 1.09002 * 109.46543 * 29.98192 * 1 2 3 32 32 H 1.08999 * 109.46925 * 149.97692 * 1 2 3 33 33 H 1.07997 * 120.27719 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.46837 * 270.29715 * 5 4 3 35 35 H 1.09001 * 109.46771 * 30.29867 * 5 4 3 36 36 H 1.08993 * 109.46864 * 150.29220 * 5 4 3 37 37 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 38 38 H 1.08998 * 110.03604 * 0.02562 * 12 10 9 39 39 H 1.09002 * 110.03614 * 121.38535 * 12 10 9 40 40 H 1.09004 * 110.48701 * 142.29403 * 13 12 10 41 41 H 1.09004 * 110.48319 * 264.92650 * 13 12 10 42 42 H 1.09004 * 110.75812 * 80.36821 * 14 13 12 43 43 H 1.08997 * 110.75824 * 203.56182 * 14 13 12 44 44 H 1.08993 * 109.47210 * 305.00553 * 17 15 10 45 45 H 1.09008 * 109.46796 * 65.00150 * 17 15 10 46 46 H 0.97002 * 120.00628 * 0.02562 * 18 17 15 47 47 H 0.96989 * 119.99988 * 180.02562 * 22 21 19 48 48 H 0.96696 * 114.00226 * 89.99343 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5698 1.2064 0.0059 5 6 4.3409 2.5013 0.0123 6 6 4.2356 -0.0249 -0.0004 7 6 5.7097 -0.0815 -0.0008 8 8 6.3169 -0.1046 -1.0541 9 7 6.3835 -0.1076 1.1661 10 6 7.8476 -0.1577 1.1656 11 1 8.2402 0.4139 0.3245 12 6 8.3250 -1.6179 1.0792 13 6 9.1470 -1.8890 2.3562 14 6 8.6234 -0.8454 3.3738 15 6 8.3961 0.4076 2.4920 16 1 9.3372 0.9312 2.3234 17 6 7.3717 1.3405 3.1410 18 7 7.9586 1.9563 4.3336 19 6 7.2229 2.8352 5.0829 20 1 6.2098 3.0741 4.7948 21 6 7.7788 3.4184 6.2133 22 7 7.0715 4.2628 6.9337 23 14 9.5308 3.0047 6.7119 24 1 10.4680 3.9569 6.0637 25 1 9.6628 3.1074 8.1874 26 1 9.8545 1.6209 6.2811 27 6 3.4757 -1.2041 -0.0003 28 8 4.0991 -2.4064 -0.0007 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3632 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6412 2.1375 -0.0004 34 1 4.5267 2.8185 -1.0138 35 1 3.7622 3.2662 0.5301 36 1 5.2915 2.3555 0.5253 37 1 5.8991 -0.0888 2.0063 38 1 7.4674 -2.2893 1.0373 39 1 8.9493 -1.7551 0.1963 40 1 8.9652 -2.9006 2.7193 41 1 10.2094 -1.7365 2.1656 42 1 7.6866 -1.1780 3.8209 43 1 9.3691 -0.6490 4.1441 44 1 7.0886 2.1186 2.4322 45 1 6.4881 0.7686 3.4248 46 1 8.8687 1.7421 4.5922 47 1 7.4601 4.6705 7.7233 48 1 4.2805 -2.7557 0.8826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699027282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:56 Heat of formation + Delta-G solvation = -38.643049 kcal Electronic energy + Delta-G solvation = -29458.491477 eV Core-core repulsion = 25513.506628 eV Total energy + Delta-G solvation = -3944.984849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18436 -39.80678 -37.97618 -37.58522 -34.65335 -34.43666 -33.45733 -32.00285 -31.63812 -29.21059 -28.91391 -27.88124 -27.22915 -24.73960 -23.65784 -22.16821 -22.07429 -20.81158 -20.45695 -19.47323 -18.66389 -18.12366 -17.58380 -17.34785 -16.29020 -15.80687 -15.22969 -14.95336 -14.88021 -14.52320 -14.29215 -14.19514 -13.94474 -13.76320 -13.51226 -13.34005 -13.22201 -13.04840 -12.71190 -12.63660 -12.48679 -12.21908 -12.05895 -11.87461 -11.84137 -11.59683 -11.05759 -11.02955 -10.96266 -10.57721 -10.52757 -10.46399 -10.31577 -10.15562 -9.74835 -9.66169 -9.58499 -9.08065 -9.02573 -8.96823 -7.31274 -5.83835 -3.19825 0.55608 0.87751 2.47850 2.99319 3.21341 3.31756 3.34704 3.38391 3.40584 4.22363 4.31144 4.43411 4.52880 4.63088 4.66696 4.77263 4.90554 4.96597 5.06729 5.17253 5.25048 5.29460 5.35793 5.39259 5.42283 5.50665 5.53360 5.59543 5.61994 5.68758 5.70142 5.73385 5.79466 5.87158 5.92794 5.94343 5.97937 6.13869 6.22022 6.29736 6.32697 6.50851 6.55146 6.61414 7.16970 7.43695 7.61863 7.90913 8.12714 8.34918 9.13707 9.86143 10.05632 11.34418 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.003632 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.362832 B = 7707.703028 C = 9311.547617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.185 4.185 4 C 0.017 3.983 5 C -0.127 4.127 6 C -0.203 4.203 7 C 0.577 3.423 8 O -0.528 6.528 9 N -0.711 5.711 10 C 0.149 3.851 11 H 0.091 0.909 12 C -0.131 4.131 13 C -0.125 4.125 14 C -0.116 4.116 15 C -0.112 4.112 16 H 0.088 0.912 17 C 0.169 3.831 18 N -0.752 5.752 19 C -0.247 4.247 20 H 0.089 0.911 21 C 0.006 3.994 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.353 3.647 28 O -0.474 6.474 29 N -0.507 5.507 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.405 0.595 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.028 0.972 45 H 0.022 0.978 46 H 0.362 0.638 47 H 0.260 0.740 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -10.762 -13.483 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.205 4.205 4 C 0.009 3.991 5 C -0.183 4.183 6 C -0.209 4.209 7 C 0.361 3.639 8 O -0.404 6.404 9 N -0.364 5.364 10 C 0.044 3.956 11 H 0.109 0.891 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.131 4.131 16 H 0.107 0.893 17 C 0.041 3.959 18 N -0.398 5.398 19 C -0.376 4.376 20 H 0.107 0.893 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C 0.173 3.827 28 O -0.281 6.281 29 N -0.228 5.228 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.242 0.758 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.039 0.961 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.447 -11.390 -14.758 20.075 hybrid contribution 1.535 0.392 1.392 2.109 sum -5.912 -10.998 -13.366 18.291 Atomic orbital electron populations 1.20803 0.88108 1.03853 1.03640 1.21174 0.96994 0.87043 0.91797 1.21819 0.93682 0.99722 1.05279 1.20319 0.93711 0.94272 0.90790 1.20986 1.00596 0.93075 1.03683 1.20833 0.94982 0.94148 1.10976 1.17764 0.85961 0.75877 0.84259 1.90801 1.69191 1.49084 1.31313 1.46322 1.07567 1.74168 1.08374 1.21633 0.78821 0.96376 0.98760 0.89137 1.22566 1.00122 0.95958 0.98298 1.22385 0.99549 0.99153 0.95165 1.22543 1.01613 0.93990 0.97183 1.22540 1.00361 0.96704 0.93500 0.89325 1.20547 0.93462 0.93174 0.88680 1.42678 1.14634 1.53578 1.28914 1.19024 0.97805 1.16442 1.04376 0.89311 1.24666 0.97716 0.98973 0.97603 1.69693 1.36534 1.33088 1.18730 0.86558 0.86152 0.78035 0.77825 1.21065 1.21721 1.20278 1.18948 0.86401 0.84299 0.93025 1.84746 1.76704 1.32779 1.33887 1.67023 1.09047 1.30467 1.16223 0.89743 0.90169 0.90186 0.83643 0.89632 0.89720 0.90289 0.75769 0.91319 0.91291 0.91750 0.91632 0.91191 0.91207 0.95416 0.96080 0.80566 0.93005 0.73931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.16 36.01 0.37 -0.38 16 2 C 0.17 1.76 6.78 -82.53 -0.56 1.20 16 3 C -0.19 -1.84 9.41 -39.50 -0.37 -2.21 16 4 C 0.02 0.20 5.95 -103.92 -0.62 -0.42 16 5 C -0.13 -1.36 9.69 36.01 0.35 -1.01 16 6 C -0.20 -2.66 5.66 -104.69 -0.59 -3.26 16 7 C 0.58 8.17 5.41 -12.48 -0.07 8.11 16 8 O -0.53 -9.28 16.78 5.28 0.09 -9.20 16 9 N -0.71 -8.84 4.37 -53.77 -0.24 -9.08 16 10 C 0.15 1.88 3.10 -66.82 -0.21 1.68 16 11 H 0.09 1.25 7.60 -51.93 -0.39 0.85 16 12 C -0.13 -1.46 6.59 -25.61 -0.17 -1.63 16 13 C -0.12 -1.32 6.83 -25.07 -0.17 -1.49 16 14 C -0.12 -1.48 6.19 -24.74 -0.15 -1.63 16 15 C -0.11 -1.55 2.85 -88.96 -0.25 -1.80 16 16 H 0.09 1.25 8.14 -51.92 -0.42 0.82 16 17 C 0.17 2.94 4.72 -4.05 -0.02 2.92 16 18 N -0.75 -16.76 5.30 -59.91 -0.32 -17.08 16 19 C -0.25 -6.69 10.47 -15.06 -0.16 -6.84 16 20 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -28.55 13.97 55.49 0.78 -27.77 16 23 Si 0.88 21.44 27.74 -169.99 -4.71 16.72 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 27 C 0.35 4.61 7.77 -16.61 -0.13 4.48 16 28 O -0.47 -5.65 13.01 -17.98 -0.23 -5.89 16 29 N -0.51 -6.48 10.28 -9.21 -0.09 -6.57 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.08 0.96 7.19 -51.93 -0.37 0.59 16 37 H 0.40 4.78 6.48 -40.82 -0.26 4.51 16 38 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.36 6.40 -51.92 -0.33 0.03 16 46 H 0.36 7.91 5.50 -40.82 -0.22 7.69 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.40 2.87 9.06 45.56 0.41 3.29 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -34.93 391.24 -8.35 -43.27 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.66 Total: 11.89 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.85 Total: -2.20 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.13 Total: -60.49 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.15 Total: -15.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.93 -8.35 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699027282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.630 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds