Wall clock time and date at job start Tue Mar 31 2020 17:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38352 * 119.40452 * 2 1 4 4 C 1.38335 * 119.45648 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.82557 * 179.97438 * 4 3 2 6 6 C 1.39990 * 118.34938 * 0.02562 * 4 3 2 7 7 C 1.47526 * 120.59877 * 180.02562 * 6 4 3 8 8 O 1.21591 * 119.99816 * 89.99698 * 7 6 4 9 9 N 1.34776 * 120.00180 * 270.00285 * 7 6 4 10 10 C 1.46496 * 120.00266 * 179.97438 * 9 7 6 11 11 H 1.08991 * 110.05689 * 326.41653 * 10 9 7 12 12 C 1.53880 * 110.03054 * 87.83161 * 10 9 7 13 13 C 1.54270 * 106.59732 * 119.28454 * 12 10 9 14 14 C 1.54890 * 104.19464 * 23.61168 * 13 12 10 15 15 C 1.54268 * 110.03123 * 204.99561 * 10 9 7 16 16 H 1.08996 * 110.48666 * 335.91621 * 15 10 9 17 17 C 1.53002 * 110.48619 * 98.43131 * 15 10 9 18 18 N 1.46499 * 109.47337 * 184.99898 * 17 15 10 19 19 C 1.36935 * 119.99938 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00083 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99632 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99535 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00484 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00576 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00326 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00037 * 23 21 19 27 27 C 1.40278 * 118.80369 * 0.27265 * 6 4 3 28 28 O 1.35433 * 119.79718 * 179.70152 * 27 6 4 29 29 N 1.31880 * 119.40532 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47122 * 89.99905 * 1 2 3 31 31 H 1.09006 * 109.46815 * 209.99739 * 1 2 3 32 32 H 1.09001 * 109.47261 * 329.99936 * 1 2 3 33 33 H 1.07993 * 120.27408 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.47246 * 270.01767 * 5 4 3 35 35 H 1.08992 * 109.46984 * 30.02209 * 5 4 3 36 36 H 1.09003 * 109.46889 * 150.02272 * 5 4 3 37 37 H 0.97006 * 119.99569 * 359.97438 * 9 7 6 38 38 H 1.08995 * 110.03068 * 238.56731 * 12 10 9 39 39 H 1.08998 * 110.03560 * 359.95298 * 12 10 9 40 40 H 1.08999 * 110.48014 * 142.28797 * 13 12 10 41 41 H 1.08997 * 110.48883 * 264.92785 * 13 12 10 42 42 H 1.09001 * 110.74926 * 203.74241 * 14 13 12 43 43 H 1.08993 * 110.76040 * 80.37090 * 14 13 12 44 44 H 1.08993 * 109.47262 * 64.99215 * 17 15 10 45 45 H 1.09005 * 109.46767 * 304.99830 * 17 15 10 46 46 H 0.96999 * 119.99984 * 0.02562 * 18 17 15 47 47 H 0.97005 * 119.99717 * 179.97438 * 22 21 19 48 48 H 0.96704 * 113.99639 * 90.00107 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2065 -0.0005 5 6 4.3407 2.5014 -0.0011 6 6 4.2355 -0.0249 -0.0016 7 6 5.7097 -0.0814 -0.0017 8 8 6.3171 -0.1056 1.0513 9 7 6.3831 -0.1062 -1.1689 10 6 7.8470 -0.1618 -1.1689 11 1 8.2420 0.3893 -0.3156 12 6 8.3189 -1.6255 -1.1153 13 6 9.1404 -1.8709 -2.3977 14 6 9.6206 -0.4593 -2.8172 15 6 8.3983 0.4311 -2.4821 16 1 7.6502 0.3687 -3.2724 17 6 8.8345 1.8825 -2.2728 18 7 9.2416 2.4601 -3.5561 19 6 9.6735 3.7582 -3.6165 20 1 9.7136 4.3563 -2.7181 21 6 10.0586 4.3055 -4.8326 22 7 10.4742 5.5531 -4.8905 23 14 9.9885 3.2713 -6.3865 24 1 11.2843 2.5708 -6.5739 25 1 8.8977 2.2708 -6.2663 26 1 9.7274 4.1502 -7.5547 27 6 3.4757 -1.2040 -0.0080 28 8 4.0991 -2.4063 -0.0152 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6411 2.1375 0.0004 34 1 4.5259 2.8135 -1.0289 35 1 3.7623 3.2688 0.5131 36 1 5.2917 2.3581 0.5120 37 1 5.8984 -0.0872 -2.0089 38 1 8.9429 -1.7845 -0.2359 39 1 7.4587 -2.2944 -1.0883 40 1 9.9928 -2.5168 -2.1869 41 1 8.5131 -2.3071 -3.1750 42 1 9.8408 -0.4275 -3.8842 43 1 10.4900 -0.1576 -2.2331 44 1 9.6738 1.9131 -1.5780 45 1 8.0030 2.4564 -1.8634 46 1 9.2044 1.9233 -4.3631 47 1 10.7437 5.9355 -5.7403 48 1 4.2807 -2.7605 0.8661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699027296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:00 Heat of formation + Delta-G solvation = -44.129232 kcal Electronic energy + Delta-G solvation = -29006.778429 eV Core-core repulsion = 25061.555681 eV Total energy + Delta-G solvation = -3945.222748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25363 -39.73147 -38.00378 -37.65930 -34.68312 -34.52017 -33.53964 -32.10267 -31.57095 -29.21156 -28.94105 -27.95303 -27.21794 -24.66888 -23.68555 -22.23358 -21.80852 -21.04874 -20.20209 -19.87875 -18.74488 -18.05472 -17.52687 -17.28443 -16.64648 -15.91650 -15.33188 -15.08220 -14.59989 -14.46696 -14.29240 -14.21056 -13.93545 -13.61161 -13.58979 -13.32733 -13.30573 -13.13508 -12.73110 -12.67302 -12.38286 -12.28744 -12.18710 -11.94837 -11.89380 -11.71135 -11.12664 -10.96513 -10.86059 -10.59942 -10.49567 -10.44686 -10.36256 -10.09290 -9.86932 -9.64672 -9.60725 -9.14710 -9.08433 -8.91396 -7.24880 -5.78541 -3.13986 0.44474 0.76894 2.39727 2.95467 3.02957 3.34563 3.37319 3.39455 3.43070 4.11725 4.20898 4.41947 4.56823 4.59130 4.64447 4.72359 4.87054 4.94770 4.96564 5.07208 5.18301 5.26576 5.30208 5.35101 5.46177 5.50361 5.52858 5.55663 5.59506 5.66043 5.69258 5.78555 5.80015 5.82849 5.84800 5.97585 6.08888 6.12873 6.15253 6.32509 6.42739 6.47404 6.63994 6.76879 7.08308 7.37294 7.51654 7.97802 8.05501 8.40507 9.19604 9.91865 10.11917 11.39987 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.003097 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.011211 B = 9038.839180 C =10261.391901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.187 4.187 4 C 0.016 3.984 5 C -0.129 4.129 6 C -0.204 4.204 7 C 0.578 3.422 8 O -0.534 6.534 9 N -0.705 5.705 10 C 0.146 3.854 11 H 0.097 0.903 12 C -0.132 4.132 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.107 4.107 16 H 0.078 0.922 17 C 0.166 3.834 18 N -0.754 5.754 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.278 1.278 26 H -0.291 1.291 27 C 0.354 3.646 28 O -0.476 6.476 29 N -0.508 5.508 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.401 0.599 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.762 -14.898 10.551 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.206 4.206 4 C 0.009 3.991 5 C -0.185 4.185 6 C -0.210 4.210 7 C 0.363 3.637 8 O -0.410 6.410 9 N -0.355 5.355 10 C 0.042 3.958 11 H 0.115 0.885 12 C -0.170 4.170 13 C -0.162 4.162 14 C -0.151 4.151 15 C -0.127 4.127 16 H 0.097 0.903 17 C 0.039 3.961 18 N -0.400 5.400 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.204 1.204 26 H -0.218 1.218 27 C 0.174 3.826 28 O -0.284 6.284 29 N -0.228 5.228 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.673 -15.427 10.794 25.823 hybrid contribution 0.246 -0.015 -1.183 1.209 sum -17.426 -15.443 9.611 25.190 Atomic orbital electron populations 1.20806 0.88106 1.03892 1.03616 1.21182 0.96997 0.87054 0.91795 1.21819 0.93682 0.99703 1.05435 1.20342 0.93695 0.94331 0.90780 1.21002 1.00491 0.92832 1.04209 1.20907 0.95054 0.94120 1.10943 1.17740 0.85882 0.75798 0.84321 1.90817 1.69263 1.49798 1.31168 1.46172 1.07562 1.73598 1.08156 1.21743 0.78237 0.96272 0.99564 0.88544 1.22547 1.00077 0.95912 0.98498 1.22379 0.99294 0.97565 0.96985 1.22491 0.97493 0.93349 1.01796 1.22501 0.97845 0.96591 0.95734 0.90322 1.20654 0.96983 0.89234 0.89236 1.42678 1.80633 1.12463 1.04192 1.19056 1.35524 0.86954 0.95748 0.89271 1.24672 1.01273 0.95999 0.97242 1.69707 1.50407 1.12932 1.25220 0.86547 0.77811 0.79789 0.84370 1.21041 1.20418 1.21754 1.18977 0.86369 0.84368 0.92886 1.84690 1.76677 1.32669 1.34342 1.67043 1.09093 1.30457 1.16220 0.89818 0.90144 0.90137 0.83671 0.89115 0.89980 0.90252 0.76417 0.91189 0.91350 0.91655 0.91849 0.91181 0.90622 0.95200 0.95719 0.80687 0.93065 0.73542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 36.01 0.37 -0.25 16 2 C 0.17 1.55 6.78 -82.53 -0.56 0.99 16 3 C -0.19 -1.61 9.41 -39.50 -0.37 -1.98 16 4 C 0.02 0.17 5.95 -103.93 -0.62 -0.45 16 5 C -0.13 -1.25 9.69 36.01 0.35 -0.90 16 6 C -0.20 -2.44 5.66 -104.69 -0.59 -3.04 16 7 C 0.58 7.76 5.42 -12.47 -0.07 7.69 16 8 O -0.53 -8.75 16.76 5.29 0.09 -8.67 16 9 N -0.71 -8.69 4.98 -53.77 -0.27 -8.96 16 10 C 0.15 1.92 2.82 -66.81 -0.19 1.73 16 11 H 0.10 1.43 7.26 -51.93 -0.38 1.05 16 12 C -0.13 -1.54 6.59 -25.61 -0.17 -1.71 16 13 C -0.12 -1.39 6.83 -25.07 -0.17 -1.57 16 14 C -0.11 -1.54 6.19 -24.74 -0.15 -1.69 16 15 C -0.11 -1.55 2.59 -88.96 -0.23 -1.78 16 16 H 0.08 1.12 7.74 -51.93 -0.40 0.72 16 17 C 0.17 3.12 5.54 -4.04 -0.02 3.10 16 18 N -0.75 -17.50 5.30 -59.91 -0.32 -17.82 16 19 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 23 Si 0.88 21.88 27.74 -169.99 -4.71 17.17 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C 0.35 4.20 7.77 -16.61 -0.13 4.07 16 28 O -0.48 -5.14 13.01 -17.99 -0.23 -5.37 16 29 N -0.51 -5.88 10.28 -9.21 -0.09 -5.97 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.08 0.92 7.19 -51.93 -0.37 0.55 16 37 H 0.40 4.46 8.34 -40.82 -0.34 4.12 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.07 7.96 -51.93 -0.41 0.65 16 44 H 0.03 0.58 8.02 -51.93 -0.42 0.17 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.13 5.50 -40.82 -0.22 7.91 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 48 H 0.41 2.78 9.06 45.56 0.41 3.20 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -35.13 394.85 -8.41 -43.54 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.78 Total: 11.39 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.81 Total: -2.76 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.10 Total: -61.25 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.15 Total: -14.04 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.13 -8.41 -43.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699027296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.587 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds