Wall clock time and date at job start Tue Mar 31 2020 17:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38352 * 119.40452 * 2 1 4 4 C 1.38335 * 119.45648 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.82557 * 179.97438 * 4 3 2 6 6 C 1.39990 * 118.34938 * 0.02562 * 4 3 2 7 7 C 1.47526 * 120.59877 * 180.02562 * 6 4 3 8 8 O 1.21591 * 119.99816 * 89.99698 * 7 6 4 9 9 N 1.34776 * 120.00180 * 270.00285 * 7 6 4 10 10 C 1.46496 * 120.00266 * 179.97438 * 9 7 6 11 11 H 1.08991 * 110.05689 * 326.41653 * 10 9 7 12 12 C 1.53880 * 110.03054 * 87.83161 * 10 9 7 13 13 C 1.54270 * 106.59732 * 119.28454 * 12 10 9 14 14 C 1.54890 * 104.19464 * 23.61168 * 13 12 10 15 15 C 1.54268 * 110.03123 * 204.99561 * 10 9 7 16 16 H 1.08996 * 110.48666 * 335.91621 * 15 10 9 17 17 C 1.53002 * 110.48619 * 98.43131 * 15 10 9 18 18 N 1.46499 * 109.47337 * 184.99898 * 17 15 10 19 19 C 1.36935 * 119.99938 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00083 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99632 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99535 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00484 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00576 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00326 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00037 * 23 21 19 27 27 C 1.40278 * 118.80369 * 0.27265 * 6 4 3 28 28 O 1.35433 * 119.79718 * 179.70152 * 27 6 4 29 29 N 1.31880 * 119.40532 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47122 * 89.99905 * 1 2 3 31 31 H 1.09006 * 109.46815 * 209.99739 * 1 2 3 32 32 H 1.09001 * 109.47261 * 329.99936 * 1 2 3 33 33 H 1.07993 * 120.27408 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.47246 * 270.01767 * 5 4 3 35 35 H 1.08992 * 109.46984 * 30.02209 * 5 4 3 36 36 H 1.09003 * 109.46889 * 150.02272 * 5 4 3 37 37 H 0.97006 * 119.99569 * 359.97438 * 9 7 6 38 38 H 1.08995 * 110.03068 * 238.56731 * 12 10 9 39 39 H 1.08998 * 110.03560 * 359.95298 * 12 10 9 40 40 H 1.08999 * 110.48014 * 142.28797 * 13 12 10 41 41 H 1.08997 * 110.48883 * 264.92785 * 13 12 10 42 42 H 1.09001 * 110.74926 * 203.74241 * 14 13 12 43 43 H 1.08993 * 110.76040 * 80.37090 * 14 13 12 44 44 H 1.08993 * 109.47262 * 64.99215 * 17 15 10 45 45 H 1.09005 * 109.46767 * 304.99830 * 17 15 10 46 46 H 0.96999 * 119.99984 * 0.02562 * 18 17 15 47 47 H 0.97005 * 119.99717 * 179.97438 * 22 21 19 48 48 H 0.96704 * 113.99639 * 90.00107 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2065 -0.0005 5 6 4.3407 2.5014 -0.0011 6 6 4.2355 -0.0249 -0.0016 7 6 5.7097 -0.0814 -0.0017 8 8 6.3171 -0.1056 1.0513 9 7 6.3831 -0.1062 -1.1689 10 6 7.8470 -0.1618 -1.1689 11 1 8.2420 0.3893 -0.3156 12 6 8.3189 -1.6255 -1.1153 13 6 9.1404 -1.8709 -2.3977 14 6 9.6206 -0.4593 -2.8172 15 6 8.3983 0.4311 -2.4821 16 1 7.6502 0.3687 -3.2724 17 6 8.8345 1.8825 -2.2728 18 7 9.2416 2.4601 -3.5561 19 6 9.6735 3.7582 -3.6165 20 1 9.7136 4.3563 -2.7181 21 6 10.0586 4.3055 -4.8326 22 7 10.4742 5.5531 -4.8905 23 14 9.9885 3.2713 -6.3865 24 1 11.2843 2.5708 -6.5739 25 1 8.8977 2.2708 -6.2663 26 1 9.7274 4.1502 -7.5547 27 6 3.4757 -1.2040 -0.0080 28 8 4.0991 -2.4063 -0.0152 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6411 2.1375 0.0004 34 1 4.5259 2.8135 -1.0289 35 1 3.7623 3.2688 0.5131 36 1 5.2917 2.3581 0.5120 37 1 5.8984 -0.0872 -2.0089 38 1 8.9429 -1.7845 -0.2359 39 1 7.4587 -2.2944 -1.0883 40 1 9.9928 -2.5168 -2.1869 41 1 8.5131 -2.3071 -3.1750 42 1 9.8408 -0.4275 -3.8842 43 1 10.4900 -0.1576 -2.2331 44 1 9.6738 1.9131 -1.5780 45 1 8.0030 2.4564 -1.8634 46 1 9.2044 1.9233 -4.3631 47 1 10.7437 5.9355 -5.7403 48 1 4.2807 -2.7605 0.8661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699027296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:59 Heat of formation + Delta-G solvation = -71.893367 kcal Electronic energy + Delta-G solvation = -29007.982372 eV Core-core repulsion = 25061.555681 eV Total energy + Delta-G solvation = -3946.426691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10514 -40.75403 -39.14835 -38.43891 -36.48150 -35.34634 -34.63565 -33.56344 -32.79805 -30.64929 -29.88796 -28.72273 -28.09311 -26.30622 -24.57359 -23.69004 -22.96843 -21.98916 -21.38389 -20.93680 -19.78489 -19.52688 -18.66687 -18.27380 -17.75901 -16.74717 -16.55363 -16.33077 -16.16177 -15.58285 -15.29304 -15.20589 -15.07079 -14.93624 -14.63419 -14.48957 -14.27339 -14.03416 -13.95561 -13.79021 -13.46827 -13.27512 -13.03222 -12.97084 -12.87668 -12.80016 -12.65056 -12.43728 -12.19847 -11.99808 -11.85914 -11.73973 -11.61311 -11.46151 -11.38602 -10.98217 -10.66692 -10.51071 -10.16599 -9.89401 -9.31563 -8.03410 -5.37508 -0.32867 -0.00218 1.36119 1.37308 1.41819 1.48988 2.02680 2.25990 2.48111 2.61059 3.27680 3.29666 3.38088 3.51048 3.58732 3.63176 3.85782 3.91276 3.96014 4.16442 4.25168 4.33638 4.42792 4.47546 4.49543 4.53852 4.55158 4.57450 4.61093 4.70140 4.80432 4.93494 4.95080 4.97676 4.99940 5.04144 5.10602 5.14418 5.16065 5.21273 5.27208 5.45961 5.48290 5.52639 5.74159 6.20089 6.35837 6.38755 6.76467 7.03045 7.06921 7.81628 8.03120 9.18302 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012695 B = 0.003097 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.011211 B = 9038.839180 C =10261.391901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.179 4.179 4 C 0.008 3.992 5 C -0.126 4.126 6 C -0.223 4.223 7 C 0.583 3.417 8 O -0.570 6.570 9 N -0.698 5.698 10 C 0.152 3.848 11 H 0.075 0.925 12 C -0.125 4.125 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.096 4.096 16 H 0.089 0.911 17 C 0.166 3.834 18 N -0.752 5.752 19 C -0.236 4.236 20 H 0.052 0.948 21 C -0.064 4.064 22 N -0.985 5.985 23 Si 0.957 3.043 24 H -0.277 1.277 25 H -0.248 1.248 26 H -0.296 1.296 27 C 0.346 3.654 28 O -0.486 6.486 29 N -0.528 5.528 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.179 0.821 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.409 0.591 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.021 0.979 45 H 0.016 0.984 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.837 -16.821 9.511 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.026 3.974 3 C -0.198 4.198 4 C 0.000 4.000 5 C -0.182 4.182 6 C -0.229 4.229 7 C 0.369 3.631 8 O -0.450 6.450 9 N -0.348 5.348 10 C 0.047 3.953 11 H 0.093 0.907 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.115 4.115 16 H 0.107 0.893 17 C 0.040 3.960 18 N -0.398 5.398 19 C -0.367 4.367 20 H 0.070 0.930 21 C -0.255 4.255 22 N -0.635 5.635 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.172 1.172 26 H -0.223 1.223 27 C 0.166 3.834 28 O -0.296 6.296 29 N -0.249 5.249 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.197 0.803 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.245 0.755 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.201 0.799 47 H 0.067 0.933 48 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -19.773 -17.402 9.772 28.094 hybrid contribution 0.843 0.660 -0.729 1.296 sum -18.930 -16.741 9.043 26.840 Atomic orbital electron populations 1.20933 0.85506 1.05104 1.04646 1.21853 0.98678 0.86654 0.90254 1.22159 0.92843 1.00961 1.03824 1.20521 0.94713 0.93820 0.90941 1.20983 0.99653 0.93422 1.04136 1.20838 0.93945 0.95105 1.13046 1.17954 0.86588 0.74759 0.83821 1.90789 1.70216 1.51571 1.32396 1.46109 1.07235 1.73043 1.08386 1.21593 0.78698 0.97139 0.97913 0.90672 1.22481 1.00312 0.94446 0.99106 1.22317 0.99821 0.96171 0.96642 1.22498 0.96557 0.94639 1.01657 1.22355 0.98759 0.93673 0.96729 0.89277 1.20746 0.96195 0.91917 0.87187 1.42610 1.80337 1.10827 1.06026 1.19007 1.34643 0.88576 0.94491 0.93024 1.25541 1.01503 0.97351 1.01129 1.69900 1.52243 1.15284 1.26115 0.85380 0.78900 0.78404 0.78941 1.20281 1.17231 1.22274 1.19062 0.86693 0.84454 0.93173 1.84637 1.76728 1.32519 1.35691 1.67135 1.08848 1.31755 1.17138 0.88672 0.90345 0.87553 0.80344 0.89151 0.87591 0.92795 0.75505 0.91151 0.90945 0.90088 0.90539 0.91176 0.91563 0.96118 0.96553 0.79856 0.93291 0.72012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.16 71.24 0.72 -0.18 16 2 C 0.16 2.67 6.78 42.58 0.29 2.96 16 3 C -0.18 -2.65 9.41 22.32 0.21 -2.44 16 4 C 0.01 0.16 5.95 -19.42 -0.12 0.04 16 5 C -0.13 -2.37 9.69 71.24 0.69 -1.68 16 6 C -0.22 -5.28 5.66 -19.91 -0.11 -5.40 16 7 C 0.58 15.83 5.42 86.69 0.47 16.30 16 8 O -0.57 -19.28 16.76 -4.00 -0.07 -19.35 16 9 N -0.70 -16.96 4.98 -442.28 -2.20 -19.16 16 10 C 0.15 3.91 2.82 45.72 0.13 4.04 16 11 H 0.08 2.29 7.26 -2.39 -0.02 2.27 16 12 C -0.12 -2.73 6.59 31.32 0.21 -2.52 16 13 C -0.11 -2.20 6.83 31.67 0.22 -1.98 16 14 C -0.12 -2.92 6.19 31.89 0.20 -2.72 16 15 C -0.10 -2.67 2.59 -9.72 -0.03 -2.69 16 16 H 0.09 2.34 7.74 -2.39 -0.02 2.32 16 17 C 0.17 6.27 5.54 86.38 0.48 6.75 16 18 N -0.75 -34.56 5.30 -343.45 -1.82 -36.38 16 19 C -0.24 -13.53 10.47 84.03 0.88 -12.65 16 20 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 21 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 22 N -0.98 -63.23 13.97 21.65 0.30 -62.93 16 23 Si 0.96 44.69 27.74 68.60 1.90 46.59 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 C 0.35 8.02 7.77 85.13 0.66 8.68 16 28 O -0.49 -10.31 13.01 -87.29 -1.14 -11.44 16 29 N -0.53 -11.60 10.28 -296.05 -3.04 -14.64 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.11 0.38 8.07 -2.39 -0.02 0.36 16 33 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.11 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.05 1.29 7.19 -2.39 -0.02 1.28 16 37 H 0.41 8.69 8.34 -92.70 -0.77 7.92 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.56 7.92 -2.39 -0.02 1.54 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 1.80 7.96 -2.39 -0.02 1.78 16 44 H 0.02 0.83 8.02 -2.39 -0.02 0.81 16 45 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.37 15.82 5.50 -92.71 -0.51 15.31 16 47 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 48 H 0.42 5.72 9.06 -74.05 -0.67 5.05 16 Total: -1.00 -77.89 394.85 -1.71 -79.60 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -1.01 Total: 34.48 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.36 Total: 3.23 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -6.76 Total: -133.11 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -1.20 Total: -30.79 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Total: -77.89 -1.71 -79.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699027296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.711 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds