Wall clock time and date at job start Tue Mar 31 2020 17:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38355 * 119.41120 * 2 1 4 4 C 1.38327 * 119.45934 * 179.72243 * 3 2 1 5 5 C 1.50698 * 120.82548 * 179.97438 * 4 3 2 6 6 C 1.39986 * 118.35185 * 359.97438 * 4 3 2 7 7 C 1.47528 * 120.60136 * 180.02562 * 6 4 3 8 8 O 1.21587 * 119.99518 * 90.00120 * 7 6 4 9 9 N 1.34775 * 120.00222 * 270.00570 * 7 6 4 10 10 C 1.46504 * 119.99772 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.01920 * 326.39122 * 10 9 7 12 12 C 1.53876 * 110.03226 * 87.83480 * 10 9 7 13 13 C 1.54262 * 106.60014 * 119.28153 * 12 10 9 14 14 C 1.54889 * 104.19635 * 336.38728 * 13 12 10 15 15 C 1.54269 * 110.03019 * 204.99508 * 10 9 7 16 16 H 1.08999 * 110.48394 * 145.51462 * 15 10 9 17 17 C 1.53005 * 110.48352 * 23.00815 * 15 10 9 18 18 N 1.46498 * 109.46896 * 174.99516 * 17 15 10 19 19 C 1.36934 * 120.00198 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99765 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00165 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00077 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46828 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47220 * 120.00005 * 23 21 19 26 26 H 1.48496 * 109.47145 * 240.00522 * 23 21 19 27 27 C 1.40282 * 118.80573 * 0.02562 * 6 4 3 28 28 O 1.35434 * 119.80344 * 180.02562 * 27 6 4 29 29 N 1.31880 * 119.40305 * 179.73175 * 2 1 3 30 30 H 1.09003 * 109.47426 * 89.99704 * 1 2 3 31 31 H 1.08995 * 109.47279 * 209.99910 * 1 2 3 32 32 H 1.09003 * 109.46937 * 329.99971 * 1 2 3 33 33 H 1.08003 * 120.26517 * 359.74626 * 3 2 1 34 34 H 1.09004 * 109.46939 * 90.00318 * 5 4 3 35 35 H 1.09008 * 109.47575 * 209.99786 * 5 4 3 36 36 H 1.08997 * 109.47169 * 330.00416 * 5 4 3 37 37 H 0.97001 * 120.00346 * 359.97438 * 9 7 6 38 38 H 1.09001 * 110.03088 * 238.56831 * 12 10 9 39 39 H 1.09008 * 110.02991 * 359.97438 * 12 10 9 40 40 H 1.09003 * 110.48546 * 217.70907 * 13 12 10 41 41 H 1.08999 * 110.60037 * 95.12621 * 13 12 10 42 42 H 1.08996 * 110.75835 * 279.63148 * 14 13 12 43 43 H 1.08999 * 110.91434 * 156.32517 * 14 13 12 44 44 H 1.08999 * 109.47056 * 294.99702 * 17 15 10 45 45 H 1.09005 * 109.47155 * 54.99981 * 17 15 10 46 46 H 0.97004 * 120.00271 * 0.02562 * 18 17 15 47 47 H 0.96999 * 120.00181 * 179.97438 * 22 21 19 48 48 H 0.96694 * 113.99216 * 89.99992 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 0.0058 5 6 4.3408 2.5011 0.0054 6 6 4.2355 -0.0250 0.0121 7 6 5.7097 -0.0816 0.0191 8 8 6.3122 -0.1022 1.0750 9 7 6.3885 -0.1104 -1.1449 10 6 7.8524 -0.1661 -1.1379 11 1 8.2428 0.3884 -0.2847 12 6 8.3239 -1.6296 -1.0770 13 6 9.1514 -1.8795 -2.3547 14 6 8.6369 -0.8146 -3.3549 15 6 8.4099 0.4221 -2.4505 16 1 9.3508 0.9408 -2.2668 17 6 7.3922 1.3712 -3.0867 18 7 7.9875 2.0074 -4.2643 19 6 7.2586 2.9025 -5.0010 20 1 6.2450 3.1396 -4.7136 21 6 7.8229 3.5058 -6.1165 22 7 9.0585 3.2172 -6.4666 23 14 6.8288 4.7274 -7.1211 24 1 5.4781 4.8774 -6.5223 25 1 7.5176 6.0429 -7.1235 26 1 6.7004 4.2332 -8.5155 27 6 3.4757 -1.2042 0.0117 28 8 4.0990 -2.4066 0.0182 29 7 2.1545 -1.1489 0.0054 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6412 2.1375 -0.0041 34 1 4.5224 2.8162 1.0330 35 1 5.2936 2.3565 -0.5040 36 1 3.7643 3.2673 -0.5129 37 1 5.9078 -0.0943 -1.9873 38 1 8.9438 -1.7857 -0.1942 39 1 7.4635 -2.2984 -1.0523 40 1 8.9676 -2.8832 -2.7380 41 1 10.2138 -1.7361 -2.1577 42 1 7.7012 -1.1351 -3.8130 43 1 9.3862 -0.6030 -4.1176 44 1 6.5080 0.8082 -3.3858 45 1 7.1084 2.1368 -2.3645 46 1 8.8979 1.7942 -4.5227 47 1 9.4527 3.6385 -7.2463 48 1 4.2755 -2.7531 0.9035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699027299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:06 Heat of formation + Delta-G solvation = -43.359946 kcal Electronic energy + Delta-G solvation = -29394.520436 eV Core-core repulsion = 25449.331046 eV Total energy + Delta-G solvation = -3945.189389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16762 -39.72075 -37.87784 -37.56030 -34.46769 -34.39984 -33.36379 -32.00570 -31.44866 -29.01359 -28.56938 -27.87493 -27.13404 -24.56889 -23.65055 -22.35594 -22.12629 -20.78320 -20.31761 -19.24698 -18.64517 -18.06293 -17.39392 -17.09671 -16.14422 -15.83206 -15.04222 -14.95486 -14.84369 -14.45986 -14.30132 -14.16131 -13.77550 -13.60465 -13.51323 -13.23525 -13.12786 -13.03489 -12.85089 -12.64464 -12.31008 -12.22837 -12.07760 -11.85151 -11.55624 -11.28566 -10.91184 -10.87900 -10.82192 -10.50887 -10.36912 -10.33725 -10.28191 -9.99186 -9.77182 -9.72428 -9.55232 -9.04259 -8.97513 -8.91303 -6.96044 -5.80231 -3.08965 0.54798 0.86773 2.50189 3.05657 3.15232 3.40253 3.45608 3.48035 3.49862 4.21726 4.30012 4.49030 4.59221 4.73278 4.75158 4.83273 4.96779 5.05834 5.08221 5.15868 5.26993 5.35630 5.39828 5.45785 5.51601 5.58718 5.64124 5.65644 5.70044 5.77621 5.85211 5.86244 5.92330 5.94091 6.06766 6.10061 6.19824 6.22014 6.28698 6.49378 6.53544 6.62680 6.71422 6.79209 7.18016 7.51609 7.61693 7.65974 8.16897 8.38408 9.50003 10.07346 10.42182 11.42589 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.003783 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.797500 B = 7398.911191 C = 9425.689679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.167 3.833 3 C -0.186 4.186 4 C 0.016 3.984 5 C -0.127 4.127 6 C -0.202 4.202 7 C 0.578 3.422 8 O -0.539 6.539 9 N -0.703 5.703 10 C 0.147 3.853 11 H 0.090 0.910 12 C -0.131 4.131 13 C -0.125 4.125 14 C -0.113 4.113 15 C -0.107 4.107 16 H 0.089 0.911 17 C 0.165 3.835 18 N -0.729 5.729 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.354 3.646 28 O -0.475 6.475 29 N -0.508 5.508 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.406 0.594 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.014 0.986 45 H 0.019 0.981 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 -8.478 15.540 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.206 4.206 4 C 0.008 3.992 5 C -0.183 4.183 6 C -0.209 4.209 7 C 0.362 3.638 8 O -0.416 6.416 9 N -0.354 5.354 10 C 0.042 3.958 11 H 0.108 0.892 12 C -0.170 4.170 13 C -0.162 4.162 14 C -0.150 4.150 15 C -0.126 4.126 16 H 0.107 0.893 17 C 0.037 3.963 18 N -0.373 5.373 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.174 3.826 28 O -0.283 6.283 29 N -0.228 5.228 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.163 0.837 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.244 0.756 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.031 0.969 45 H 0.036 0.964 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -11.721 -9.143 15.627 21.568 hybrid contribution 0.082 1.204 -0.689 1.389 sum -11.639 -7.939 14.939 20.535 Atomic orbital electron populations 1.20799 0.88145 1.03792 1.03645 1.21167 0.96969 0.87062 0.91881 1.21805 0.93678 0.99686 1.05426 1.20313 0.93698 0.94308 0.90849 1.20984 1.00637 0.93042 1.03681 1.20905 0.95114 0.94102 1.10770 1.17744 0.85867 0.75839 0.84362 1.90790 1.69594 1.50289 1.30975 1.46288 1.07641 1.73054 1.08456 1.21690 0.78650 0.96292 0.99166 0.89214 1.22569 1.00099 0.96012 0.98305 1.22376 0.99442 0.99161 0.95257 1.22506 1.01661 0.93689 0.97189 1.22487 1.00291 0.96622 0.93242 0.89289 1.20572 0.93460 0.92745 0.89541 1.42337 1.15679 1.50543 1.28744 1.19240 0.96326 1.16094 1.05452 0.91262 1.24728 0.96468 1.00732 0.98906 1.69663 1.13324 1.46836 1.28192 0.86145 0.79070 0.80981 0.80153 1.20601 1.21848 1.21844 1.18967 0.86367 0.84329 0.92932 1.84698 1.76713 1.32762 1.34095 1.67029 1.09091 1.30434 1.16218 0.89798 0.90184 0.90194 0.83717 0.89617 0.90226 0.89845 0.75638 0.91474 0.91249 0.91893 0.91644 0.91485 0.90769 0.96859 0.96363 0.78166 0.93537 0.73657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 36.01 0.37 -0.36 16 2 C 0.17 1.73 6.78 -82.53 -0.56 1.17 16 3 C -0.19 -1.82 9.41 -39.51 -0.37 -2.19 16 4 C 0.02 0.19 5.95 -103.94 -0.62 -0.43 16 5 C -0.13 -1.36 9.69 36.00 0.35 -1.01 16 6 C -0.20 -2.68 5.66 -104.69 -0.59 -3.27 16 7 C 0.58 8.37 5.42 -12.47 -0.07 8.31 16 8 O -0.54 -9.15 16.76 5.29 0.09 -9.06 16 9 N -0.70 -9.78 4.34 -53.76 -0.23 -10.01 16 10 C 0.15 2.05 3.12 -66.81 -0.21 1.85 16 11 H 0.09 1.33 7.56 -51.93 -0.39 0.93 16 12 C -0.13 -1.65 6.59 -25.61 -0.17 -1.82 16 13 C -0.12 -1.52 6.83 -25.07 -0.17 -1.70 16 14 C -0.11 -1.67 6.19 -24.74 -0.15 -1.83 16 15 C -0.11 -1.67 2.85 -88.96 -0.25 -1.93 16 16 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 17 C 0.16 3.14 4.73 -4.04 -0.02 3.12 16 18 N -0.73 -17.81 5.49 -59.91 -0.33 -18.14 16 19 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C 0.35 4.62 7.77 -16.61 -0.13 4.49 16 28 O -0.48 -5.67 13.02 -17.99 -0.23 -5.90 16 29 N -0.51 -6.44 10.28 -9.21 -0.09 -6.53 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.00 7.19 -51.92 -0.37 0.62 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.41 5.69 6.55 -40.82 -0.27 5.43 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.90 7.92 -51.92 -0.41 0.48 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.04 7.97 -51.93 -0.41 0.62 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.01 0.26 6.41 -51.93 -0.33 -0.07 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 9.92 7.64 -40.82 -0.31 9.61 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.40 3.13 9.06 45.56 0.41 3.54 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -33.61 394.38 -8.71 -42.32 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -6.70 Total: 14.07 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.84 Total: -2.73 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.07 Total: -61.69 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.15 Total: -14.96 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.61 -8.71 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699027299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.043 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds