Wall clock time and date at job start Tue Mar 31 2020 17:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38355 * 119.41120 * 2 1 4 4 C 1.38327 * 119.45934 * 179.72243 * 3 2 1 5 5 C 1.50698 * 120.82548 * 179.97438 * 4 3 2 6 6 C 1.39986 * 118.35185 * 359.97438 * 4 3 2 7 7 C 1.47528 * 120.60136 * 180.02562 * 6 4 3 8 8 O 1.21587 * 119.99518 * 90.00120 * 7 6 4 9 9 N 1.34775 * 120.00222 * 270.00570 * 7 6 4 10 10 C 1.46504 * 119.99772 * 179.97438 * 9 7 6 11 11 H 1.08995 * 110.01920 * 326.39122 * 10 9 7 12 12 C 1.53876 * 110.03226 * 87.83480 * 10 9 7 13 13 C 1.54262 * 106.60014 * 119.28153 * 12 10 9 14 14 C 1.54889 * 104.19635 * 336.38728 * 13 12 10 15 15 C 1.54269 * 110.03019 * 204.99508 * 10 9 7 16 16 H 1.08999 * 110.48394 * 145.51462 * 15 10 9 17 17 C 1.53005 * 110.48352 * 23.00815 * 15 10 9 18 18 N 1.46498 * 109.46896 * 174.99516 * 17 15 10 19 19 C 1.36934 * 120.00198 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99765 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00165 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00077 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46828 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47220 * 120.00005 * 23 21 19 26 26 H 1.48496 * 109.47145 * 240.00522 * 23 21 19 27 27 C 1.40282 * 118.80573 * 0.02562 * 6 4 3 28 28 O 1.35434 * 119.80344 * 180.02562 * 27 6 4 29 29 N 1.31880 * 119.40305 * 179.73175 * 2 1 3 30 30 H 1.09003 * 109.47426 * 89.99704 * 1 2 3 31 31 H 1.08995 * 109.47279 * 209.99910 * 1 2 3 32 32 H 1.09003 * 109.46937 * 329.99971 * 1 2 3 33 33 H 1.08003 * 120.26517 * 359.74626 * 3 2 1 34 34 H 1.09004 * 109.46939 * 90.00318 * 5 4 3 35 35 H 1.09008 * 109.47575 * 209.99786 * 5 4 3 36 36 H 1.08997 * 109.47169 * 330.00416 * 5 4 3 37 37 H 0.97001 * 120.00346 * 359.97438 * 9 7 6 38 38 H 1.09001 * 110.03088 * 238.56831 * 12 10 9 39 39 H 1.09008 * 110.02991 * 359.97438 * 12 10 9 40 40 H 1.09003 * 110.48546 * 217.70907 * 13 12 10 41 41 H 1.08999 * 110.60037 * 95.12621 * 13 12 10 42 42 H 1.08996 * 110.75835 * 279.63148 * 14 13 12 43 43 H 1.08999 * 110.91434 * 156.32517 * 14 13 12 44 44 H 1.08999 * 109.47056 * 294.99702 * 17 15 10 45 45 H 1.09005 * 109.47155 * 54.99981 * 17 15 10 46 46 H 0.97004 * 120.00271 * 0.02562 * 18 17 15 47 47 H 0.96999 * 120.00181 * 179.97438 * 22 21 19 48 48 H 0.96694 * 113.99216 * 89.99992 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2064 0.0058 5 6 4.3408 2.5011 0.0054 6 6 4.2355 -0.0250 0.0121 7 6 5.7097 -0.0816 0.0191 8 8 6.3122 -0.1022 1.0750 9 7 6.3885 -0.1104 -1.1449 10 6 7.8524 -0.1661 -1.1379 11 1 8.2428 0.3884 -0.2847 12 6 8.3239 -1.6296 -1.0770 13 6 9.1514 -1.8795 -2.3547 14 6 8.6369 -0.8146 -3.3549 15 6 8.4099 0.4221 -2.4505 16 1 9.3508 0.9408 -2.2668 17 6 7.3922 1.3712 -3.0867 18 7 7.9875 2.0074 -4.2643 19 6 7.2586 2.9025 -5.0010 20 1 6.2450 3.1396 -4.7136 21 6 7.8229 3.5058 -6.1165 22 7 9.0585 3.2172 -6.4666 23 14 6.8288 4.7274 -7.1211 24 1 5.4781 4.8774 -6.5223 25 1 7.5176 6.0429 -7.1235 26 1 6.7004 4.2332 -8.5155 27 6 3.4757 -1.2042 0.0117 28 8 4.0990 -2.4066 0.0182 29 7 2.1545 -1.1489 0.0054 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6412 2.1375 -0.0041 34 1 4.5224 2.8162 1.0330 35 1 5.2936 2.3565 -0.5040 36 1 3.7643 3.2673 -0.5129 37 1 5.9078 -0.0943 -1.9873 38 1 8.9438 -1.7857 -0.1942 39 1 7.4635 -2.2984 -1.0523 40 1 8.9676 -2.8832 -2.7380 41 1 10.2138 -1.7361 -2.1577 42 1 7.7012 -1.1351 -3.8130 43 1 9.3862 -0.6030 -4.1176 44 1 6.5080 0.8082 -3.3858 45 1 7.1084 2.1368 -2.3645 46 1 8.8979 1.7942 -4.5227 47 1 9.4527 3.6385 -7.2463 48 1 4.2755 -2.7531 0.9035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699027299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:05 Heat of formation + Delta-G solvation = -68.688283 kcal Electronic energy + Delta-G solvation = -29395.618755 eV Core-core repulsion = 25449.331046 eV Total energy + Delta-G solvation = -3946.287708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11475 -40.82999 -39.09009 -38.43579 -36.27164 -35.34150 -34.49367 -33.32665 -32.78941 -30.26456 -29.84506 -28.72732 -28.09306 -26.33533 -24.57675 -24.07744 -23.05187 -21.76900 -21.44809 -20.56863 -19.52272 -19.40237 -18.81124 -18.28348 -17.33936 -16.77734 -16.61342 -16.25014 -15.99870 -15.69477 -15.25367 -15.18175 -15.16981 -14.97766 -14.68247 -14.52799 -14.24669 -14.00739 -13.94209 -13.60020 -13.25888 -13.15168 -12.97794 -12.90485 -12.84872 -12.70040 -12.63921 -12.31655 -12.14149 -11.99694 -11.85201 -11.68144 -11.56971 -11.49333 -11.36530 -10.92903 -10.64645 -10.50875 -10.14669 -9.88047 -8.99834 -7.94842 -5.23439 -0.31554 0.01057 1.37922 1.47715 1.47985 1.57814 2.05308 2.28034 2.55522 2.61657 3.33261 3.39699 3.44823 3.52615 3.64193 3.66019 3.85108 3.96952 4.15320 4.18688 4.25625 4.37510 4.46265 4.49514 4.52709 4.53911 4.57680 4.60619 4.65701 4.75396 4.80621 4.82729 4.93633 4.98566 5.01901 5.08987 5.10105 5.16548 5.21203 5.23172 5.33518 5.44946 5.48972 5.50750 5.51619 6.26838 6.36534 6.40126 6.77564 7.02602 7.34187 8.08964 8.32953 9.28795 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.003783 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.797500 B = 7398.911191 C = 9425.689679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.162 3.838 3 C -0.179 4.179 4 C 0.007 3.993 5 C -0.125 4.125 6 C -0.224 4.224 7 C 0.584 3.416 8 O -0.568 6.568 9 N -0.700 5.700 10 C 0.152 3.848 11 H 0.083 0.917 12 C -0.123 4.123 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.099 4.099 16 H 0.084 0.916 17 C 0.168 3.832 18 N -0.740 5.740 19 C -0.243 4.243 20 H 0.075 0.925 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.344 3.656 28 O -0.486 6.486 29 N -0.528 5.528 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.180 0.820 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.020 0.980 45 H 0.015 0.985 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 -8.294 16.184 22.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.024 3.976 3 C -0.199 4.199 4 C -0.001 4.001 5 C -0.181 4.181 6 C -0.231 4.231 7 C 0.370 3.630 8 O -0.448 6.448 9 N -0.350 5.350 10 C 0.048 3.952 11 H 0.101 0.899 12 C -0.162 4.162 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.118 4.118 16 H 0.102 0.898 17 C 0.042 3.958 18 N -0.383 5.383 19 C -0.375 4.375 20 H 0.093 0.907 21 C -0.265 4.265 22 N -0.619 5.619 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.165 3.835 28 O -0.296 6.296 29 N -0.249 5.249 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.197 0.803 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.243 0.757 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.033 0.967 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -13.765 -8.980 16.306 23.152 hybrid contribution 0.636 1.133 -0.830 1.541 sum -13.129 -7.847 15.477 21.759 Atomic orbital electron populations 1.20929 0.85474 1.05154 1.04582 1.21864 0.98706 0.86675 0.90315 1.22163 0.92887 1.00964 1.03849 1.20544 0.94758 0.93922 0.90890 1.20989 0.99696 0.93302 1.04113 1.20871 0.94143 0.95119 1.12958 1.17909 0.86500 0.74820 0.83784 1.90762 1.70414 1.51736 1.31842 1.46261 1.07548 1.72810 1.08422 1.21616 0.78763 0.97232 0.97636 0.89923 1.22507 1.00214 0.94533 0.98954 1.22319 0.99892 0.98879 0.94004 1.22444 1.00979 0.94180 0.97265 1.22363 0.99119 0.96261 0.94095 0.89797 1.20657 0.94357 0.93000 0.87816 1.42521 1.15280 1.50549 1.29929 1.19633 0.96634 1.15815 1.05389 0.90700 1.25518 0.97567 1.03015 1.00398 1.69813 1.14968 1.48336 1.28735 0.85128 0.78323 0.78367 0.78287 1.18930 1.22122 1.22146 1.19076 0.86740 0.84441 0.93267 1.84645 1.76772 1.32637 1.35555 1.67120 1.08831 1.31768 1.17172 0.88853 0.90273 0.87434 0.80302 0.88885 0.92596 0.87857 0.75707 0.90369 0.91379 0.90440 0.90498 0.92225 0.92291 0.96243 0.96705 0.79286 0.94037 0.72011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.16 71.24 0.72 -0.39 16 2 C 0.16 3.02 6.78 42.58 0.29 3.31 16 3 C -0.18 -3.06 9.41 22.32 0.21 -2.85 16 4 C 0.01 0.15 5.95 -19.42 -0.12 0.03 16 5 C -0.12 -2.52 9.69 71.24 0.69 -1.83 16 6 C -0.22 -5.88 5.66 -19.91 -0.11 -5.99 16 7 C 0.58 17.01 5.42 86.69 0.47 17.48 16 8 O -0.57 -19.43 16.76 -3.99 -0.07 -19.50 16 9 N -0.70 -19.48 4.34 -442.27 -1.92 -21.40 16 10 C 0.15 4.22 3.12 45.72 0.14 4.36 16 11 H 0.08 2.44 7.56 -2.39 -0.02 2.42 16 12 C -0.12 -2.95 6.59 31.32 0.21 -2.74 16 13 C -0.11 -2.60 6.83 31.67 0.22 -2.39 16 14 C -0.11 -3.26 6.19 31.88 0.20 -3.07 16 15 C -0.10 -3.10 2.85 -9.72 -0.03 -3.13 16 16 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 17 C 0.17 6.47 4.73 86.38 0.41 6.88 16 18 N -0.74 -36.60 5.49 -343.45 -1.89 -38.49 16 19 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 20 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 22 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 23 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 C 0.34 8.89 7.77 85.13 0.66 9.55 16 28 O -0.49 -11.57 13.02 -87.29 -1.14 -12.71 16 29 N -0.53 -12.89 10.28 -296.05 -3.04 -15.93 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.56 8.07 -2.39 -0.02 0.54 16 33 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.39 7.19 -2.38 -0.02 1.38 16 36 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.41 11.41 6.55 -92.71 -0.61 10.80 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 1.67 7.92 -2.38 -0.02 1.65 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.83 7.97 -2.39 -0.02 1.81 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 44 H 0.02 0.75 6.41 -2.39 -0.02 0.73 16 45 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.38 19.79 7.64 -92.71 -0.71 19.08 16 47 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 48 H 0.42 6.51 9.06 -74.06 -0.67 5.84 16 Total: -1.00 -72.38 394.38 -1.46 -73.84 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.98 Total: 41.82 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.27 Total: 3.16 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -6.57 Total: -134.01 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.20 Total: -32.21 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.38 -1.46 -73.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699027299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.147 kcal (2) G-P(sol) polarization free energy of solvation -72.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds