Wall clock time and date at job start Tue Mar 31 2020 17:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35920 * 117.00058 * 2 1 4 4 C 1.38850 * 120.40822 * 359.72067 * 3 2 1 5 5 N 1.31879 * 120.99932 * 179.75165 * 4 3 2 6 6 C 1.31677 * 121.94387 * 0.53563 * 5 4 3 7 7 C 1.39526 * 120.69171 * 359.73506 * 6 5 4 8 8 C 1.47853 * 120.53288 * 179.97438 * 7 6 5 9 9 O 1.21556 * 119.99938 * 215.51932 * 8 7 6 10 10 N 1.34773 * 120.00404 * 35.51047 * 8 7 6 11 11 C 1.47429 * 125.64275 * 5.23756 * 10 8 7 12 12 C 1.55132 * 104.72003 * 155.81234 * 11 10 8 13 13 C 1.55164 * 101.48576 * 37.29337 * 12 11 10 14 14 C 1.53001 * 110.87214 * 82.76892 * 13 12 11 15 15 C 1.52998 * 110.71617 * 205.96855 * 13 12 11 16 16 N 1.46507 * 109.46836 * 174.97726 * 15 13 12 17 17 C 1.36939 * 119.99836 * 180.02562 * 16 15 13 18 18 H 1.07989 * 119.99974 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99358 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99669 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00481 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47317 * 90.00223 * 21 19 17 23 23 H 1.48504 * 109.47273 * 210.00077 * 21 19 17 24 24 H 1.48500 * 109.47247 * 330.00289 * 21 19 17 25 25 C 1.47018 * 125.65082 * 185.53754 * 10 8 7 26 26 C 1.38849 * 120.40504 * 180.02562 * 3 2 1 27 27 C 1.50703 * 120.87737 * 359.97438 * 26 3 2 28 28 H 1.09008 * 109.46821 * 300.00237 * 1 2 3 29 29 H 1.09000 * 109.47179 * 59.99891 * 1 2 3 30 30 H 1.09000 * 109.47574 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.49819 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.65798 * 179.75085 * 6 5 4 33 33 H 1.09004 * 110.36530 * 274.73678 * 11 10 8 34 34 H 1.08990 * 110.36905 * 37.06566 * 11 10 8 35 35 H 1.08999 * 111.19578 * 279.18872 * 12 11 10 36 36 H 1.09004 * 110.93928 * 155.28308 * 12 11 10 37 37 H 1.09004 * 109.47002 * 304.93458 * 14 13 12 38 38 H 1.08998 * 109.47523 * 64.93249 * 14 13 12 39 39 H 1.08999 * 109.46872 * 184.93905 * 14 13 12 40 40 H 1.09001 * 109.47642 * 294.97004 * 15 13 12 41 41 H 1.08997 * 109.47684 * 54.98008 * 15 13 12 42 42 H 0.96998 * 119.99623 * 0.02562 * 16 15 13 43 43 H 0.96996 * 120.00349 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.88239 * 300.44138 * 25 10 8 45 45 H 1.08999 * 109.88522 * 61.45730 * 25 10 8 46 46 H 1.08998 * 109.46509 * 85.27201 * 27 26 3 47 47 H 1.09007 * 109.46955 * 205.26408 * 27 26 3 48 48 H 1.08994 * 109.47369 * 325.27080 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2982 2.3809 -0.0058 5 7 1.8847 3.5621 -0.0010 6 6 3.1953 3.6891 -0.0010 7 6 4.0199 2.5636 -0.0005 8 6 5.4912 2.7103 -0.0011 9 8 6.1808 1.9176 -0.6124 10 7 6.0677 3.7229 0.6761 11 6 5.3653 4.6862 1.5435 12 6 6.4516 5.1965 2.5264 13 6 7.6964 5.2654 1.6026 14 6 7.7103 6.5698 0.8031 15 6 8.9834 5.1181 2.4167 16 7 10.1322 5.0665 1.5090 17 6 11.3984 4.9356 2.0138 18 1 11.5501 4.8706 3.0810 19 6 12.4868 4.8873 1.1537 20 7 13.7038 4.7609 1.6388 21 14 12.2244 5.0003 -0.6923 22 1 12.2710 6.4238 -1.1127 23 1 13.2930 4.2424 -1.3916 24 1 10.9005 4.4246 -1.0402 25 6 7.5002 4.0537 0.6673 26 6 3.4321 1.2935 -0.0005 27 6 4.2810 0.0483 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2197 2.3226 -0.0100 32 1 3.6367 4.6748 -0.0010 33 1 4.9688 5.5109 0.9512 34 1 4.5631 4.1901 2.0896 35 1 6.6087 4.4901 3.3415 36 1 6.1958 6.1836 2.9115 37 1 6.7736 6.6698 0.2546 38 1 7.8239 7.4127 1.4848 39 1 8.5433 6.5562 0.1002 40 1 9.0886 5.9706 3.0877 41 1 8.9406 4.1989 3.0010 42 1 9.9959 5.1252 0.5504 43 1 14.4644 4.7268 1.0378 44 1 8.0787 3.2055 1.0332 45 1 7.8156 4.3086 -0.3444 46 1 4.4152 -0.2998 -1.0247 47 1 5.2537 0.2717 0.4377 48 1 3.7880 -0.7275 0.5852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699842076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:17 Heat of formation + Delta-G solvation = -14.405519 kcal Electronic energy + Delta-G solvation = -29130.326246 eV Core-core repulsion = 25186.392415 eV Total energy + Delta-G solvation = -3943.933831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42364 -40.16820 -38.62341 -37.93788 -35.09227 -34.03020 -32.93586 -31.21831 -30.74306 -29.33514 -28.28049 -28.06391 -26.77543 -25.98251 -24.27497 -23.10254 -22.65328 -21.71462 -19.99645 -19.07729 -18.37922 -17.84801 -17.51890 -16.77924 -16.56826 -16.27583 -16.01224 -15.51551 -14.75787 -14.64186 -14.45663 -14.25750 -14.03203 -13.86626 -13.44755 -13.21867 -13.08194 -12.99633 -12.93056 -12.77507 -12.44930 -12.26235 -12.21551 -12.07234 -11.97883 -11.86892 -11.76058 -11.41868 -10.92045 -10.69797 -10.54987 -10.44072 -10.32728 -10.07753 -9.80215 -9.61591 -9.56403 -8.89908 -8.86188 -8.69339 -7.23216 -5.76034 -3.11734 0.32289 0.82845 2.45533 2.63939 2.94924 3.37885 3.38992 3.42227 3.47513 3.94592 4.09512 4.19417 4.37510 4.43357 4.48604 4.60345 4.61704 4.63481 4.77090 4.85653 4.90300 5.01951 5.10971 5.19027 5.25330 5.33039 5.39833 5.48121 5.52013 5.55803 5.66234 5.76551 5.80141 5.86228 5.88576 5.92415 5.98279 6.11983 6.15177 6.18579 6.32406 6.43032 6.59299 6.67352 6.70210 7.36606 7.44793 7.98364 7.99570 8.42738 9.21381 9.93796 10.12850 11.42342 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.002687 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.909264 B =10417.204763 C =11041.644585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.068 3.932 4 C 0.036 3.964 5 N -0.455 5.455 6 C 0.097 3.903 7 C -0.143 4.143 8 C 0.575 3.425 9 O -0.521 6.521 10 N -0.608 5.608 11 C 0.095 3.905 12 C -0.120 4.120 13 C -0.082 4.082 14 C -0.133 4.133 15 C 0.174 3.826 16 N -0.754 5.754 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.880 3.120 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.119 3.881 26 C -0.018 4.018 27 C -0.111 4.111 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.642 -4.111 -1.416 30.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.020 3.980 4 C -0.121 4.121 5 N -0.164 5.164 6 C -0.062 4.062 7 C -0.148 4.148 8 C 0.362 3.638 9 O -0.398 6.398 10 N -0.342 5.342 11 C -0.028 4.028 12 C -0.159 4.159 13 C -0.083 4.083 14 C -0.191 4.191 15 C 0.046 3.954 16 N -0.400 5.400 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.003 4.003 26 C -0.027 4.027 27 C -0.167 4.167 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -30.542 -4.107 -1.623 30.859 hybrid contribution 0.142 -0.469 -1.394 1.477 sum -30.399 -4.576 -3.016 30.890 Atomic orbital electron populations 1.23160 0.77850 1.04596 1.01601 1.86107 1.21617 1.25474 1.88522 1.19731 0.92196 0.86116 0.99909 1.23067 1.00697 0.87095 1.01225 1.67564 1.11783 1.25924 1.11155 1.23071 0.88515 0.98458 0.96155 1.20706 0.94670 0.93841 1.05564 1.17552 0.86368 0.80371 0.79490 1.90828 1.64033 1.41444 1.43480 1.48412 1.09746 1.29432 1.46592 1.22613 0.96021 0.91976 0.92179 1.22897 0.93430 1.02390 0.97157 1.21902 0.96295 0.94605 0.95523 1.21778 1.01398 0.95868 1.00035 1.20620 0.83982 0.98895 0.91896 1.42725 1.02941 1.90364 1.04008 1.19029 0.81588 1.42515 0.94212 0.89190 1.24656 0.95128 1.01938 0.97292 1.69693 0.97523 1.57082 1.33845 0.86608 0.77269 0.77762 0.87306 1.21048 1.21667 1.20212 1.22162 0.79631 0.98144 1.00339 1.19774 0.90888 0.95723 0.96292 1.20787 0.99239 0.93028 1.03664 0.92303 0.92312 0.87692 0.82094 0.81664 0.90876 0.90546 0.89983 0.89339 0.93152 0.91819 0.91885 0.94808 0.95260 0.80567 0.93055 0.90029 0.91233 0.89825 0.89808 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.09 16 2 O -0.31 -2.62 9.75 -19.49 -0.19 -2.81 16 3 C 0.07 0.68 6.68 -39.13 -0.26 0.42 16 4 C 0.04 0.33 10.21 -17.31 -0.18 0.15 16 5 N -0.46 -4.80 10.34 -12.80 -0.13 -4.93 16 6 C 0.10 1.02 9.35 -17.14 -0.16 0.86 16 7 C -0.14 -1.74 5.44 -104.84 -0.57 -2.31 16 8 C 0.57 8.38 7.02 -12.33 -0.09 8.29 16 9 O -0.52 -9.39 15.06 5.32 0.08 -9.31 16 10 N -0.61 -8.05 3.32 -171.49 -0.57 -8.62 16 11 C 0.09 0.92 4.89 -2.41 -0.01 0.90 16 12 C -0.12 -1.24 6.04 -24.46 -0.15 -1.38 16 13 C -0.08 -1.14 0.61 -152.67 -0.09 -1.23 16 14 C -0.13 -1.74 8.26 37.16 0.31 -1.43 16 15 C 0.17 3.14 5.07 -4.04 -0.02 3.12 16 16 N -0.75 -17.38 4.95 -59.91 -0.30 -17.68 16 17 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -29.43 13.97 55.49 0.78 -28.66 16 21 Si 0.88 22.32 27.73 -169.99 -4.71 17.61 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 25 C 0.12 1.84 5.47 -3.07 -0.02 1.83 16 26 C -0.02 -0.21 5.96 -103.75 -0.62 -0.83 16 27 C -0.11 -1.29 8.87 36.01 0.32 -0.97 16 28 H 0.06 0.18 7.69 -51.92 -0.40 -0.22 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.16 0.94 6.30 -52.49 -0.33 0.61 16 32 H 0.17 1.46 5.67 -52.48 -0.30 1.16 16 33 H 0.07 0.58 6.48 -51.93 -0.34 0.24 16 34 H 0.08 0.66 7.24 -51.93 -0.38 0.28 16 35 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.09 0.74 8.04 -51.93 -0.42 0.32 16 37 H 0.05 0.55 7.44 -51.93 -0.39 0.16 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.96 7.11 -51.93 -0.37 0.59 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.55 8.13 -51.93 -0.42 0.13 16 42 H 0.36 8.21 4.23 -40.82 -0.17 8.04 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.08 1.47 7.82 -51.93 -0.41 1.06 16 45 H 0.07 1.16 7.85 -51.93 -0.41 0.75 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.08 1.12 6.16 -51.93 -0.32 0.80 16 48 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -34.74 378.08 -7.29 -42.03 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.14 Total: 5.08 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -0.80 Total: 1.59 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.22 Total: -59.88 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.11 Total: -12.12 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.74 -7.29 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699842076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.622 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds