Wall clock time and date at job start Tue Mar 31 2020 17:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35920 * 117.00058 * 2 1 4 4 C 1.38850 * 120.40822 * 359.72067 * 3 2 1 5 5 N 1.31879 * 120.99932 * 179.75165 * 4 3 2 6 6 C 1.31677 * 121.94387 * 0.53563 * 5 4 3 7 7 C 1.39526 * 120.69171 * 359.73506 * 6 5 4 8 8 C 1.47853 * 120.53288 * 179.97438 * 7 6 5 9 9 O 1.21556 * 119.99938 * 215.51932 * 8 7 6 10 10 N 1.34773 * 120.00404 * 35.51047 * 8 7 6 11 11 C 1.47429 * 125.64275 * 5.23756 * 10 8 7 12 12 C 1.55132 * 104.72003 * 155.81234 * 11 10 8 13 13 C 1.55164 * 101.48576 * 37.29337 * 12 11 10 14 14 C 1.53001 * 110.87214 * 82.76892 * 13 12 11 15 15 C 1.52998 * 110.71617 * 205.96855 * 13 12 11 16 16 N 1.46507 * 109.46836 * 174.97726 * 15 13 12 17 17 C 1.36939 * 119.99836 * 180.02562 * 16 15 13 18 18 H 1.07989 * 119.99974 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99358 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99669 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00481 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47317 * 90.00223 * 21 19 17 23 23 H 1.48504 * 109.47273 * 210.00077 * 21 19 17 24 24 H 1.48500 * 109.47247 * 330.00289 * 21 19 17 25 25 C 1.47018 * 125.65082 * 185.53754 * 10 8 7 26 26 C 1.38849 * 120.40504 * 180.02562 * 3 2 1 27 27 C 1.50703 * 120.87737 * 359.97438 * 26 3 2 28 28 H 1.09008 * 109.46821 * 300.00237 * 1 2 3 29 29 H 1.09000 * 109.47179 * 59.99891 * 1 2 3 30 30 H 1.09000 * 109.47574 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.49819 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.65798 * 179.75085 * 6 5 4 33 33 H 1.09004 * 110.36530 * 274.73678 * 11 10 8 34 34 H 1.08990 * 110.36905 * 37.06566 * 11 10 8 35 35 H 1.08999 * 111.19578 * 279.18872 * 12 11 10 36 36 H 1.09004 * 110.93928 * 155.28308 * 12 11 10 37 37 H 1.09004 * 109.47002 * 304.93458 * 14 13 12 38 38 H 1.08998 * 109.47523 * 64.93249 * 14 13 12 39 39 H 1.08999 * 109.46872 * 184.93905 * 14 13 12 40 40 H 1.09001 * 109.47642 * 294.97004 * 15 13 12 41 41 H 1.08997 * 109.47684 * 54.98008 * 15 13 12 42 42 H 0.96998 * 119.99623 * 0.02562 * 16 15 13 43 43 H 0.96996 * 120.00349 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.88239 * 300.44138 * 25 10 8 45 45 H 1.08999 * 109.88522 * 61.45730 * 25 10 8 46 46 H 1.08998 * 109.46509 * 85.27201 * 27 26 3 47 47 H 1.09007 * 109.46955 * 205.26408 * 27 26 3 48 48 H 1.08994 * 109.47369 * 325.27080 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2982 2.3809 -0.0058 5 7 1.8847 3.5621 -0.0010 6 6 3.1953 3.6891 -0.0010 7 6 4.0199 2.5636 -0.0005 8 6 5.4912 2.7103 -0.0011 9 8 6.1808 1.9176 -0.6124 10 7 6.0677 3.7229 0.6761 11 6 5.3653 4.6862 1.5435 12 6 6.4516 5.1965 2.5264 13 6 7.6964 5.2654 1.6026 14 6 7.7103 6.5698 0.8031 15 6 8.9834 5.1181 2.4167 16 7 10.1322 5.0665 1.5090 17 6 11.3984 4.9356 2.0138 18 1 11.5501 4.8706 3.0810 19 6 12.4868 4.8873 1.1537 20 7 13.7038 4.7609 1.6388 21 14 12.2244 5.0003 -0.6923 22 1 12.2710 6.4238 -1.1127 23 1 13.2930 4.2424 -1.3916 24 1 10.9005 4.4246 -1.0402 25 6 7.5002 4.0537 0.6673 26 6 3.4321 1.2935 -0.0005 27 6 4.2810 0.0483 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2197 2.3226 -0.0100 32 1 3.6367 4.6748 -0.0010 33 1 4.9688 5.5109 0.9512 34 1 4.5631 4.1901 2.0896 35 1 6.6087 4.4901 3.3415 36 1 6.1958 6.1836 2.9115 37 1 6.7736 6.6698 0.2546 38 1 7.8239 7.4127 1.4848 39 1 8.5433 6.5562 0.1002 40 1 9.0886 5.9706 3.0877 41 1 8.9406 4.1989 3.0010 42 1 9.9959 5.1252 0.5504 43 1 14.4644 4.7268 1.0378 44 1 8.0787 3.2055 1.0332 45 1 7.8156 4.3086 -0.3444 46 1 4.4152 -0.2998 -1.0247 47 1 5.2537 0.2717 0.4377 48 1 3.7880 -0.7275 0.5852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699842076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:16 Heat of formation + Delta-G solvation = -39.061465 kcal Electronic energy + Delta-G solvation = -29131.395408 eV Core-core repulsion = 25186.392415 eV Total energy + Delta-G solvation = -3945.002993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25676 -41.12108 -39.54072 -38.86199 -36.69505 -34.86590 -34.53213 -32.85552 -31.78646 -30.42127 -29.11785 -28.52002 -27.95852 -27.39265 -25.41218 -24.27604 -23.51601 -23.14205 -20.94440 -20.43634 -19.67863 -18.89291 -18.59343 -17.63264 -17.49324 -16.92299 -16.90276 -16.61032 -16.54852 -15.90717 -15.60296 -15.27692 -15.13715 -14.87395 -14.74687 -14.45664 -14.13836 -13.97434 -13.95069 -13.87027 -13.78614 -13.43441 -13.20647 -13.03379 -12.95059 -12.83349 -12.79376 -12.69073 -12.37717 -12.20371 -11.91392 -11.82728 -11.54675 -11.49320 -11.41654 -10.99919 -10.67035 -10.51196 -9.78047 -9.54910 -9.29346 -8.04099 -5.36074 -0.49565 0.05148 1.34185 1.37408 1.43502 1.50217 1.70679 2.22732 2.45564 2.57372 3.14015 3.27424 3.34993 3.38260 3.48596 3.54640 3.60061 3.71952 3.91949 3.97470 4.09363 4.21670 4.28125 4.31429 4.35760 4.40817 4.46659 4.56671 4.58304 4.59932 4.68891 4.77467 4.78075 4.88155 4.94863 4.97991 5.02635 5.06886 5.08215 5.19681 5.21808 5.26381 5.29967 5.47679 5.75508 6.12572 6.20204 6.33785 6.68643 6.90573 7.07192 7.84076 8.01436 9.17610 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021113 B = 0.002687 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.909264 B =10417.204763 C =11041.644585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.072 3.928 4 C 0.047 3.953 5 N -0.462 5.462 6 C 0.102 3.898 7 C -0.155 4.155 8 C 0.571 3.429 9 O -0.570 6.570 10 N -0.605 5.605 11 C 0.093 3.907 12 C -0.111 4.111 13 C -0.073 4.073 14 C -0.131 4.131 15 C 0.169 3.831 16 N -0.757 5.757 17 C -0.228 4.228 18 H 0.060 0.940 19 C -0.062 4.062 20 N -0.983 5.983 21 Si 0.946 3.054 22 H -0.271 1.271 23 H -0.298 1.298 24 H -0.261 1.261 25 C 0.122 3.878 26 C -0.040 4.040 27 C -0.104 4.104 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.196 0.804 32 H 0.185 0.815 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.019 0.981 42 H 0.364 0.636 43 H 0.257 0.743 44 H 0.045 0.955 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.227 -2.681 -1.824 35.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.024 3.976 4 C -0.111 4.111 5 N -0.171 5.171 6 C -0.056 4.056 7 C -0.160 4.160 8 C 0.360 3.640 9 O -0.450 6.450 10 N -0.337 5.337 11 C -0.028 4.028 12 C -0.149 4.149 13 C -0.074 4.074 14 C -0.188 4.188 15 C 0.043 3.957 16 N -0.403 5.403 17 C -0.359 4.359 18 H 0.078 0.922 19 C -0.254 4.254 20 N -0.633 5.633 21 Si 0.774 3.226 22 H -0.197 1.197 23 H -0.225 1.225 24 H -0.186 1.186 25 C -0.001 4.001 26 C -0.049 4.049 27 C -0.160 4.160 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.213 0.787 32 H 0.201 0.799 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.198 0.802 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -35.209 -2.646 -2.001 35.365 hybrid contribution 1.437 -1.011 -1.148 2.099 sum -33.772 -3.657 -3.149 34.115 Atomic orbital electron populations 1.23523 0.75442 1.06340 1.02988 1.86104 1.24084 1.24889 1.88180 1.19714 0.91488 0.87135 0.99262 1.23604 1.02184 0.86193 0.99102 1.67669 1.11485 1.26499 1.11478 1.23267 0.88470 0.98481 0.95399 1.20518 0.93020 0.94829 1.07629 1.18010 0.87405 0.79799 0.78752 1.90795 1.65314 1.43239 1.45631 1.48446 1.08947 1.29723 1.46613 1.22920 0.95847 0.92085 0.91931 1.22931 0.91234 1.04288 0.96411 1.21775 0.95568 0.94422 0.95626 1.21772 1.01927 0.95282 0.99833 1.20816 0.84493 0.98504 0.91922 1.42757 1.02587 1.90030 1.04881 1.19045 0.83728 1.40193 0.92962 0.92183 1.25422 0.94876 1.02949 1.02115 1.69864 0.98505 1.59548 1.35433 0.85542 0.77443 0.78220 0.81426 1.19717 1.22458 1.18591 1.21942 0.80958 0.97536 0.99660 1.19892 0.92107 0.95423 0.97467 1.20657 0.98293 0.93872 1.03194 0.90735 0.90957 0.86005 0.78703 0.79866 0.87835 0.88801 0.90342 0.86023 0.90253 0.90522 0.94429 0.93987 0.96265 0.80229 0.93393 0.93678 0.92788 0.90548 0.92265 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.77 9.75 -92.65 -0.90 -5.67 16 3 C 0.07 1.28 6.68 22.56 0.15 1.43 16 4 C 0.05 0.68 10.21 84.83 0.87 1.54 16 5 N -0.46 -8.11 10.34 -194.40 -2.01 -10.12 16 6 C 0.10 1.87 9.35 85.03 0.79 2.66 16 7 C -0.15 -3.62 5.44 -20.01 -0.11 -3.73 16 8 C 0.57 16.75 7.02 86.79 0.61 17.36 16 9 O -0.57 -21.60 15.06 -3.89 -0.06 -21.66 16 10 N -0.61 -15.42 3.32 -814.75 -2.71 -18.13 16 11 C 0.09 1.48 4.89 86.93 0.42 1.90 16 12 C -0.11 -1.91 6.04 32.07 0.19 -1.71 16 13 C -0.07 -1.91 0.61 -50.99 -0.03 -1.94 16 14 C -0.13 -3.04 8.26 71.98 0.59 -2.45 16 15 C 0.17 6.07 5.07 86.38 0.44 6.50 16 16 N -0.76 -35.20 4.95 -343.45 -1.70 -36.90 16 17 C -0.23 -13.13 10.47 84.03 0.88 -12.25 16 18 H 0.06 3.75 8.06 -2.92 -0.02 3.73 16 19 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 20 N -0.98 -64.05 13.97 21.65 0.30 -63.75 16 21 Si 0.95 47.05 27.73 68.60 1.90 48.95 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 24 H -0.26 -12.13 6.52 99.48 0.65 -11.49 16 25 C 0.12 3.79 5.47 86.73 0.47 4.27 16 26 C -0.04 -0.92 5.96 -19.30 -0.11 -1.03 16 27 C -0.10 -2.49 8.87 71.24 0.63 -1.86 16 28 H 0.07 0.17 7.69 -2.38 -0.02 0.15 16 29 H 0.07 0.19 7.66 -2.39 -0.02 0.17 16 30 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.20 1.36 6.30 -2.91 -0.02 1.34 16 32 H 0.18 2.51 5.67 -2.91 -0.02 2.49 16 33 H 0.10 1.09 6.48 -2.39 -0.02 1.08 16 34 H 0.09 1.25 7.24 -2.39 -0.02 1.23 16 35 H 0.08 1.45 8.04 -2.39 -0.02 1.43 16 36 H 0.12 1.39 8.04 -2.38 -0.02 1.37 16 37 H 0.08 1.39 7.44 -2.38 -0.02 1.37 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.07 7.11 -2.39 -0.02 1.05 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.02 0.74 8.13 -2.39 -0.02 0.72 16 42 H 0.36 16.52 4.23 -92.71 -0.39 16.13 16 43 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.04 1.71 7.82 -2.39 -0.02 1.69 16 45 H 0.05 1.83 7.85 -2.39 -0.02 1.81 16 46 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.06 1.70 6.16 -2.38 -0.01 1.68 16 48 H 0.08 1.73 7.77 -2.39 -0.02 1.71 16 Total: -1.00 -80.00 378.08 2.74 -77.27 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.53 Total: 21.42 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 7.38 Total: 8.59 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -6.12 Total: -128.90 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.96 Total: -27.33 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.95 kcal Total: -80.00 2.74 -77.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699842076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.205 kcal (2) G-P(sol) polarization free energy of solvation -80.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds