Wall clock time and date at job start Tue Mar 31 2020 17:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35917 * 117.00357 * 2 1 4 4 C 1.38847 * 120.40536 * 359.97438 * 3 2 1 5 5 N 1.31887 * 120.99641 * 180.02562 * 4 3 2 6 6 C 1.31676 * 121.94319 * 0.02562 * 5 4 3 7 7 C 1.39527 * 120.69468 * 359.71441 * 6 5 4 8 8 C 1.47848 * 120.53580 * 180.29165 * 7 6 5 9 9 O 1.21545 * 120.00024 * 215.32310 * 8 7 6 10 10 N 1.34775 * 119.99899 * 35.32505 * 8 7 6 11 11 C 1.47486 * 127.03621 * 5.45640 * 10 8 7 12 12 C 1.54003 * 107.08583 * 154.51732 * 11 10 8 13 13 C 1.54616 * 105.04054 * 1.30570 * 12 11 10 14 14 C 1.53006 * 110.74004 * 263.50768 * 13 12 11 15 15 C 1.53001 * 110.73639 * 140.37170 * 13 12 11 16 16 N 1.46503 * 109.46981 * 179.97438 * 15 13 12 17 17 C 1.36941 * 119.99912 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00029 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00297 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99906 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47178 * 90.00100 * 21 19 17 23 23 H 1.48499 * 109.47031 * 210.00141 * 21 19 17 24 24 H 1.48503 * 109.47301 * 330.00233 * 21 19 17 25 25 C 1.48117 * 127.03110 * 185.14016 * 10 8 7 26 26 C 1.38844 * 120.40375 * 179.97438 * 3 2 1 27 27 C 1.50698 * 120.88097 * 359.97438 * 26 3 2 28 28 H 1.09003 * 109.47159 * 300.01026 * 1 2 3 29 29 H 1.09006 * 109.46543 * 59.99929 * 1 2 3 30 30 H 1.08993 * 109.47747 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.50360 * 0.04269 * 4 3 2 32 32 H 1.07998 * 119.65259 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.91278 * 273.88047 * 11 10 8 34 34 H 1.09003 * 109.91107 * 35.15484 * 11 10 8 35 35 H 1.09003 * 110.32470 * 120.19633 * 12 11 10 36 36 H 1.08997 * 110.32414 * 242.30959 * 12 11 10 37 37 H 1.08999 * 109.46579 * 60.00635 * 14 13 12 38 38 H 1.08993 * 109.47121 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47170 * 300.00788 * 14 13 12 40 40 H 1.09006 * 109.47038 * 299.99235 * 15 13 12 41 41 H 1.08999 * 109.47722 * 59.99753 * 15 13 12 42 42 H 0.96994 * 120.00391 * 359.97438 * 16 15 13 43 43 H 0.96993 * 120.00625 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.66418 * 337.76893 * 25 10 8 45 45 H 1.09002 * 110.66216 * 100.88958 * 25 10 8 46 46 H 1.09006 * 109.47006 * 85.25760 * 27 26 3 47 47 H 1.08998 * 109.47118 * 325.26530 * 27 26 3 48 48 H 1.08995 * 109.47280 * 205.25785 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3808 -0.0005 5 7 1.8849 3.5620 -0.0010 6 6 3.1955 3.6889 -0.0016 7 6 4.0201 2.5634 0.0044 8 6 5.4913 2.7100 0.0102 9 8 6.1837 1.9143 -0.5937 10 7 6.0645 3.7259 0.6853 11 6 5.3897 4.7071 1.5553 12 6 6.4379 5.2150 2.5628 13 6 7.7465 4.4845 2.1827 14 6 7.9467 3.2428 3.0541 15 6 8.9466 5.4261 2.3012 16 7 10.1696 4.7069 1.9360 17 6 11.3779 5.3506 1.9678 18 1 11.4291 6.3886 2.2617 19 6 12.5367 4.6690 1.6223 20 7 13.6980 5.2878 1.6524 21 14 12.4480 2.8735 1.1148 22 1 12.2535 2.7835 -0.3547 23 1 13.7121 2.1901 1.4895 24 1 11.3080 2.2193 1.8059 25 6 7.5022 4.0814 0.7104 26 6 3.4321 1.2933 0.0005 27 6 4.2809 0.0481 0.0017 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.2199 2.3227 -0.0003 32 1 3.6369 4.6746 -0.0016 33 1 5.0162 5.5385 0.9573 34 1 4.5663 4.2286 2.0857 35 1 6.5644 6.2933 2.4663 36 1 6.1409 4.9586 3.5797 37 1 7.1088 2.5604 2.9119 38 1 8.8736 2.7449 2.7695 39 1 8.0004 3.5389 4.1017 40 1 8.8101 6.2749 1.6310 41 1 9.0284 5.7832 3.3278 42 1 10.1236 3.7746 1.6725 43 1 14.5077 4.8116 1.4106 44 1 8.1158 3.2217 0.4409 45 1 7.7023 4.9217 0.0455 46 1 4.4158 -0.3006 -1.0222 47 1 3.7875 -0.7274 0.5875 48 1 5.2533 0.2717 0.4404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699842077.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:19 Heat of formation + Delta-G solvation = -36.859423 kcal Electronic energy + Delta-G solvation = -29212.850058 eV Core-core repulsion = 25267.942552 eV Total energy + Delta-G solvation = -3944.907506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23436 -41.09691 -39.51448 -38.84465 -36.68254 -34.85984 -34.48856 -32.81576 -31.72162 -30.54047 -29.11328 -28.52547 -28.01762 -27.36311 -25.39306 -24.23951 -23.50703 -23.15122 -20.89785 -20.43975 -19.68752 -18.85808 -18.60331 -17.58285 -17.46470 -16.96258 -16.91984 -16.56012 -16.49974 -15.78462 -15.59487 -15.20285 -15.06924 -15.04565 -14.79924 -14.55468 -14.17834 -13.95987 -13.94333 -13.86213 -13.65017 -13.45228 -13.29541 -13.07644 -12.93343 -12.82083 -12.75679 -12.62217 -12.37869 -12.21438 -11.93774 -11.70266 -11.59787 -11.47873 -11.41457 -10.99040 -10.66371 -10.50621 -9.77801 -9.55095 -9.27038 -8.03133 -5.34241 -0.49171 0.05371 1.34527 1.36895 1.42315 1.51098 1.71093 2.22560 2.45586 2.57806 3.15057 3.29149 3.37642 3.39462 3.49103 3.59170 3.61263 3.78758 3.89246 3.99493 4.10266 4.24631 4.29385 4.29664 4.35318 4.40322 4.46503 4.56668 4.59056 4.61537 4.67949 4.77076 4.77598 4.83901 4.93183 4.97534 5.04290 5.05400 5.07869 5.10927 5.25525 5.29977 5.31789 5.42867 5.77732 6.12341 6.21713 6.38705 6.68996 6.91776 7.08568 7.86353 8.02521 9.18513 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.002743 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.282913 B =10205.476111 C =10993.585274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.071 3.929 4 C 0.046 3.954 5 N -0.463 5.463 6 C 0.102 3.898 7 C -0.155 4.155 8 C 0.577 3.423 9 O -0.569 6.569 10 N -0.608 5.608 11 C 0.095 3.905 12 C -0.113 4.113 13 C -0.077 4.077 14 C -0.127 4.127 15 C 0.170 3.830 16 N -0.759 5.759 17 C -0.224 4.224 18 H 0.065 0.935 19 C -0.060 4.060 20 N -0.982 5.982 21 Si 0.941 3.059 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.258 1.258 25 C 0.117 3.883 26 C -0.039 4.039 27 C -0.104 4.104 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.196 0.804 32 H 0.183 0.817 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.363 0.637 43 H 0.257 0.743 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.682 -7.041 -0.091 35.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.024 3.976 4 C -0.111 4.111 5 N -0.173 5.173 6 C -0.056 4.056 7 C -0.160 4.160 8 C 0.367 3.633 9 O -0.449 6.449 10 N -0.340 5.340 11 C -0.026 4.026 12 C -0.151 4.151 13 C -0.078 4.078 14 C -0.185 4.185 15 C 0.044 3.956 16 N -0.405 5.405 17 C -0.355 4.355 18 H 0.083 0.917 19 C -0.252 4.252 20 N -0.633 5.633 21 Si 0.769 3.231 22 H -0.210 1.210 23 H -0.221 1.221 24 H -0.183 1.183 25 C -0.005 4.005 26 C -0.048 4.048 27 C -0.160 4.160 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.212 0.788 32 H 0.200 0.800 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.196 0.804 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -34.705 -6.820 -0.410 35.371 hybrid contribution 1.397 -1.733 -0.546 2.292 sum -33.308 -8.553 -0.956 34.402 Atomic orbital electron populations 1.23519 0.75466 1.06335 1.02966 1.86101 1.24060 1.24890 1.88191 1.19716 0.91546 0.87098 0.99287 1.23596 1.02167 0.86221 0.99163 1.67666 1.11552 1.26538 1.11508 1.23242 0.88476 0.98502 0.95405 1.20537 0.93196 0.94743 1.07541 1.17890 0.87260 0.79566 0.78615 1.90789 1.65060 1.43068 1.45979 1.48703 1.09397 1.29299 1.46607 1.22585 0.96217 0.91726 0.92100 1.22590 0.90978 1.01518 1.00000 1.21721 0.95865 0.96324 0.93886 1.21685 1.00339 0.96483 0.99943 1.20818 0.83272 0.93262 0.98246 1.42840 1.03454 1.11190 1.83008 1.19063 0.84693 0.95706 1.36010 0.91737 1.25355 0.95081 1.01686 1.03061 1.69849 0.98292 1.37813 1.57328 0.85623 0.77119 0.81956 0.78353 1.21016 1.22098 1.18305 1.22434 0.80825 1.00016 0.97267 1.19892 0.92058 0.95450 0.97434 1.20661 0.98350 0.93793 1.03198 0.90764 0.90993 0.85986 0.78780 0.80007 0.88268 0.89184 0.88038 0.88457 0.92634 0.94900 0.91042 0.94483 0.94493 0.80388 0.93435 0.92754 0.89995 0.90551 0.89738 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.71 9.75 -92.62 -0.90 -5.61 16 3 C 0.07 1.26 6.68 22.56 0.15 1.41 16 4 C 0.05 0.67 10.21 84.83 0.87 1.54 16 5 N -0.46 -8.22 10.34 -194.40 -2.01 -10.23 16 6 C 0.10 1.87 9.38 85.03 0.80 2.67 16 7 C -0.16 -3.56 5.48 -20.01 -0.11 -3.66 16 8 C 0.58 16.33 7.07 86.79 0.61 16.94 16 9 O -0.57 -20.74 14.88 -3.86 -0.06 -20.80 16 10 N -0.61 -14.84 3.19 -813.48 -2.60 -17.44 16 11 C 0.10 1.49 5.25 86.53 0.45 1.94 16 12 C -0.11 -1.91 6.09 31.48 0.19 -1.71 16 13 C -0.08 -2.04 0.64 -51.09 -0.03 -2.08 16 14 C -0.13 -3.59 8.30 71.98 0.60 -3.00 16 15 C 0.17 5.89 5.11 86.38 0.44 6.33 16 16 N -0.76 -34.87 4.96 -343.43 -1.70 -36.57 16 17 C -0.22 -12.65 10.47 84.03 0.88 -11.77 16 18 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 19 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 20 N -0.98 -63.48 13.97 21.65 0.30 -63.18 16 21 Si 0.94 47.35 27.73 68.60 1.90 49.25 16 22 H -0.28 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 24 H -0.26 -12.00 6.52 99.48 0.65 -11.35 16 25 C 0.12 3.43 5.69 86.61 0.49 3.92 16 26 C -0.04 -0.88 5.96 -19.30 -0.11 -1.00 16 27 C -0.10 -2.42 8.87 71.24 0.63 -1.78 16 28 H 0.07 0.16 7.67 -2.39 -0.02 0.14 16 29 H 0.07 0.19 7.67 -2.38 -0.02 0.17 16 30 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.20 1.38 6.30 -2.91 -0.02 1.36 16 32 H 0.18 2.55 5.78 -2.91 -0.02 2.54 16 33 H 0.10 1.08 7.05 -2.39 -0.02 1.07 16 34 H 0.09 1.19 7.22 -2.39 -0.02 1.17 16 35 H 0.10 1.44 7.85 -2.39 -0.02 1.43 16 36 H 0.10 1.36 7.87 -2.39 -0.02 1.34 16 37 H 0.05 1.46 8.07 -2.39 -0.02 1.44 16 38 H 0.03 1.12 6.68 -2.39 -0.02 1.10 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.27 8.11 -2.38 -0.02 1.25 16 41 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.36 16.61 4.07 -92.71 -0.38 16.23 16 43 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.05 1.94 7.71 -2.39 -0.02 1.93 16 45 H 0.08 2.38 8.02 -2.39 -0.02 2.36 16 46 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.08 1.67 7.77 -2.39 -0.02 1.65 16 48 H 0.06 1.69 6.13 -2.39 -0.01 1.67 16 Total: -1.00 -77.82 379.00 2.92 -74.90 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.54 Total: 21.90 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 7.44 Total: 7.78 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -6.01 Total: -127.42 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.96 Total: -26.41 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.90 Total: 49.25 kcal Total: -77.82 2.92 -74.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699842077.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.040 kcal (2) G-P(sol) polarization free energy of solvation -77.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds