Wall clock time and date at job start Tue Mar 31 2020 18:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40196 * 120.36673 * 2 1 4 4 C 1.35346 * 119.94872 * 180.02562 * 3 2 1 5 5 N 1.35761 * 120.70252 * 359.97438 * 4 3 2 6 6 C 1.46500 * 119.62485 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47054 * 89.99856 * 6 5 4 8 8 O 1.21279 * 119.99871 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00086 * 180.02562 * 7 6 5 10 10 C 1.47417 * 125.64657 * 359.68881 * 9 7 6 11 11 C 1.55134 * 104.72264 * 155.81667 * 10 9 7 12 12 H 1.09000 * 111.19217 * 279.19337 * 11 10 9 13 13 C 1.52994 * 110.90682 * 155.27451 * 11 10 9 14 14 C 1.55163 * 101.48018 * 37.29662 * 11 10 9 15 15 H 1.08997 * 110.71547 * 82.69916 * 14 11 10 16 16 C 1.53001 * 110.71582 * 205.96505 * 14 11 10 17 17 N 1.46501 * 109.46687 * 179.97438 * 16 14 11 18 18 C 1.36936 * 119.99828 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00282 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99941 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99949 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47046 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47329 * 119.99732 * 22 20 18 25 25 H 1.48504 * 109.46622 * 239.99780 * 22 20 18 26 26 C 1.47021 * 125.64769 * 179.97438 * 9 7 6 27 27 C 1.34659 * 120.75128 * 359.77363 * 5 4 3 28 28 O 1.22061 * 119.98796 * 180.26114 * 27 5 4 29 29 C 1.36400 * 120.36868 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.46770 * 269.97757 * 1 2 3 31 31 H 1.09002 * 109.47007 * 29.97834 * 1 2 3 32 32 H 1.09002 * 109.46918 * 149.97599 * 1 2 3 33 33 H 1.08000 * 120.02477 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.64874 * 180.02562 * 4 3 2 35 35 H 1.08999 * 109.47414 * 209.99537 * 6 5 4 36 36 H 1.08998 * 109.47062 * 330.00384 * 6 5 4 37 37 H 1.08997 * 110.37206 * 274.74865 * 10 9 7 38 38 H 1.09009 * 110.36700 * 37.07622 * 10 9 7 39 39 H 1.08998 * 109.47546 * 307.98007 * 13 11 10 40 40 H 1.09004 * 109.47318 * 67.98102 * 13 11 10 41 41 H 1.08996 * 109.47540 * 187.98034 * 13 11 10 42 42 H 1.08994 * 109.47513 * 299.97455 * 16 14 11 43 43 H 1.08996 * 109.46994 * 59.98496 * 16 14 11 44 44 H 0.97001 * 120.00168 * 359.97438 * 17 16 14 45 45 H 0.96995 * 120.00452 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.88112 * 300.44321 * 26 9 7 47 47 H 1.09006 * 109.88075 * 61.44706 * 26 9 7 48 48 H 1.08002 * 120.34439 * 359.95005 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 -0.0005 5 7 4.2539 0.0274 -0.0005 6 6 5.7188 0.0443 -0.0005 7 6 6.2211 0.0501 1.4203 8 8 5.4330 0.0415 2.3421 9 7 7.5461 0.0659 1.6667 10 6 8.6097 0.0722 0.6459 11 6 9.8350 0.7040 1.3572 12 1 9.7643 1.7916 1.3724 13 6 11.1407 0.2507 0.7012 14 6 9.6982 0.1177 2.7873 15 1 10.1236 -0.8847 2.8353 16 6 10.3598 1.0379 3.8151 17 7 10.2143 0.4597 5.1533 18 6 10.7313 1.1117 6.2408 19 1 11.2468 2.0520 6.1120 20 6 10.5939 0.5635 7.5087 21 7 9.9662 -0.5827 7.6657 22 14 11.2999 1.4526 8.9921 23 1 11.9530 2.7110 8.5504 24 1 10.2066 1.7701 9.9456 25 1 12.3019 0.5831 9.6596 26 6 8.1701 0.0737 2.9978 27 6 3.6018 -1.1508 0.0046 28 8 4.2313 -2.1965 0.0093 29 6 2.1967 -1.1769 -0.0005 30 1 -0.3632 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1344 -0.0001 35 1 6.0924 -0.8415 -0.5143 36 1 6.0718 0.9384 -0.5143 37 1 8.8360 -0.9454 0.3274 38 1 8.3121 0.6806 -0.2083 39 1 11.1560 -0.8373 0.6358 40 1 11.2112 0.6759 -0.3000 41 1 11.9855 0.5903 1.3004 42 1 11.4184 1.1450 3.5787 43 1 9.8806 2.0165 3.7882 44 1 9.7510 -0.3847 5.2690 45 1 9.8698 -0.9655 8.5516 46 1 7.8467 0.9538 3.5536 47 1 7.8945 -0.8299 3.5417 48 1 1.6683 -2.1188 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699971238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:49 Heat of formation + Delta-G solvation = -23.817276 kcal Electronic energy + Delta-G solvation = -28508.163159 eV Core-core repulsion = 24563.821203 eV Total energy + Delta-G solvation = -3944.341956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68432 -39.99771 -37.96489 -37.18205 -35.43863 -34.71327 -32.99717 -31.46449 -30.84492 -29.81460 -29.07319 -27.33176 -26.40207 -25.12450 -23.92822 -23.17070 -21.86900 -21.20163 -20.09216 -19.54942 -17.77800 -17.69467 -17.47667 -17.01195 -16.29115 -16.09125 -15.61890 -15.16274 -14.76040 -14.50701 -14.38926 -14.18277 -14.06130 -13.67348 -13.64782 -13.32563 -13.21791 -12.93323 -12.85858 -12.59671 -12.50660 -12.33346 -12.12018 -12.00927 -11.91663 -11.86696 -11.44319 -11.11318 -10.89974 -10.66936 -10.46952 -10.42453 -10.36123 -10.10754 -9.98795 -9.70933 -9.67407 -8.89023 -8.63539 -8.16345 -6.93561 -5.76052 -3.05744 0.60943 1.69828 2.23520 2.48524 2.94843 3.43796 3.48708 3.49748 3.51589 4.21564 4.24143 4.31813 4.41054 4.46495 4.56820 4.70655 4.77435 4.80770 4.86716 4.97772 5.07872 5.22988 5.23675 5.27013 5.30682 5.44909 5.45335 5.51540 5.57864 5.67141 5.71443 5.75801 5.83302 5.95144 6.00207 6.11008 6.14467 6.16608 6.26704 6.31111 6.35379 6.38153 6.66650 6.80001 6.86223 7.43998 7.69822 7.88300 8.04639 8.41927 9.53259 10.09897 10.44024 11.46644 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.002489 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.555998 B =11245.805623 C =12485.036855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.015 3.985 3 C -0.230 4.230 4 C 0.145 3.855 5 N -0.482 5.482 6 C 0.076 3.924 7 C 0.512 3.488 8 O -0.524 6.524 9 N -0.613 5.613 10 C 0.099 3.901 11 C -0.098 4.098 12 H 0.088 0.912 13 C -0.140 4.140 14 C -0.100 4.100 15 H 0.087 0.913 16 C 0.166 3.834 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.117 3.883 27 C 0.522 3.478 28 O -0.551 6.551 29 C -0.248 4.248 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 5.270 -24.502 27.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.018 3.982 5 N -0.193 5.193 6 C -0.049 4.049 7 C 0.298 3.702 8 O -0.400 6.400 9 N -0.348 5.348 10 C -0.024 4.024 11 C -0.117 4.117 12 H 0.106 0.894 13 C -0.198 4.198 14 C -0.119 4.119 15 H 0.105 0.895 16 C 0.038 3.962 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.004 4.004 27 C 0.325 3.675 28 O -0.433 6.433 29 C -0.269 4.269 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.361 4.695 -23.907 27.320 hybrid contribution 0.282 0.240 1.066 1.128 sum -12.079 4.935 -22.841 26.305 Atomic orbital electron populations 1.20928 0.90352 1.03386 1.03251 1.20206 0.96778 0.92666 0.89223 1.20512 0.92314 0.98936 1.13529 1.21883 0.93649 0.89461 0.93167 1.45060 1.07159 1.07355 1.59707 1.21769 0.79679 1.07041 0.96445 1.20242 0.81397 0.77551 0.91014 1.90787 1.54257 1.49172 1.45771 1.48502 1.04376 1.72643 1.09265 1.22575 0.87529 1.01158 0.91149 1.22401 0.93880 1.00683 0.94761 0.89402 1.21699 0.96485 1.01466 1.00105 1.22536 0.93790 1.01230 0.94390 0.89484 1.20623 0.96696 0.93910 0.85006 1.42374 1.68525 1.26169 1.00685 1.19240 1.28990 1.03123 0.85898 0.91124 1.24763 1.01223 0.97369 0.97588 1.69667 1.47184 1.19016 1.22065 0.86122 0.78229 0.78648 0.83205 1.20566 1.21847 1.21854 1.22078 0.92142 1.03326 0.82865 1.17095 0.89382 0.82415 0.78645 1.90961 1.69135 1.30270 1.52936 1.21914 0.92208 0.99591 1.13204 0.90015 0.90796 0.90848 0.83703 0.82194 0.85366 0.86249 0.90800 0.90830 0.92317 0.92601 0.91512 0.95750 0.96205 0.78211 0.93487 0.90473 0.91067 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.03 36.01 0.36 -0.34 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.79 9.71 -39.88 -0.39 -2.18 16 4 C 0.15 1.24 10.28 -16.84 -0.17 1.06 16 5 N -0.48 -5.62 2.07 -121.06 -0.25 -5.87 16 6 C 0.08 0.79 4.81 -5.19 -0.02 0.76 16 7 C 0.51 7.61 7.91 -10.98 -0.09 7.53 16 8 O -0.52 -10.36 16.76 5.56 0.09 -10.27 16 9 N -0.61 -8.48 3.32 -170.38 -0.57 -9.05 16 10 C 0.10 0.96 6.16 -2.41 -0.01 0.94 16 11 C -0.10 -1.05 3.10 -88.35 -0.27 -1.32 16 12 H 0.09 0.92 8.05 -51.93 -0.42 0.51 16 13 C -0.14 -1.27 9.31 37.15 0.35 -0.92 16 14 C -0.10 -1.52 2.48 -88.79 -0.22 -1.74 16 15 H 0.09 1.37 8.04 -51.93 -0.42 0.95 16 16 C 0.17 3.17 5.58 -4.04 -0.02 3.15 16 17 N -0.73 -18.42 5.45 -59.91 -0.33 -18.74 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.92 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 22 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.12 1.99 6.15 -3.07 -0.02 1.97 16 27 C 0.52 7.62 7.40 -15.45 -0.11 7.50 16 28 O -0.55 -10.08 16.64 4.86 0.08 -10.00 16 29 C -0.25 -2.92 9.65 -39.38 -0.38 -3.30 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.16 0.81 8.04 -52.49 -0.42 0.39 16 35 H 0.13 1.30 7.39 -51.93 -0.38 0.92 16 36 H 0.12 0.67 7.72 -51.93 -0.40 0.27 16 37 H 0.07 0.67 7.99 -51.93 -0.41 0.26 16 38 H 0.07 0.47 7.48 -51.92 -0.39 0.09 16 39 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 44 H 0.38 10.27 7.52 -40.82 -0.31 9.97 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 46 H 0.08 1.47 7.76 -51.93 -0.40 1.07 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -38.55 397.42 -8.89 -47.44 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.74 Total: 5.60 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.87 Total: 5.22 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.42 Total: -61.59 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.17 Total: -20.27 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.55 -8.89 -47.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699971238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.620 kcal (2) G-P(sol) polarization free energy of solvation -38.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds