Wall clock time and date at job start Tue Mar 31 2020 18:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40196 * 120.36673 * 2 1 4 4 C 1.35346 * 119.94872 * 180.02562 * 3 2 1 5 5 N 1.35761 * 120.70252 * 359.97438 * 4 3 2 6 6 C 1.46500 * 119.62485 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47054 * 89.99856 * 6 5 4 8 8 O 1.21279 * 119.99871 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00086 * 180.02562 * 7 6 5 10 10 C 1.47417 * 125.64657 * 359.68881 * 9 7 6 11 11 C 1.55134 * 104.72264 * 155.81667 * 10 9 7 12 12 H 1.09000 * 111.19217 * 279.19337 * 11 10 9 13 13 C 1.52994 * 110.90682 * 155.27451 * 11 10 9 14 14 C 1.55163 * 101.48018 * 37.29662 * 11 10 9 15 15 H 1.08997 * 110.71547 * 82.69916 * 14 11 10 16 16 C 1.53001 * 110.71582 * 205.96505 * 14 11 10 17 17 N 1.46501 * 109.46687 * 179.97438 * 16 14 11 18 18 C 1.36936 * 119.99828 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00282 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99941 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99949 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47046 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47329 * 119.99732 * 22 20 18 25 25 H 1.48504 * 109.46622 * 239.99780 * 22 20 18 26 26 C 1.47021 * 125.64769 * 179.97438 * 9 7 6 27 27 C 1.34659 * 120.75128 * 359.77363 * 5 4 3 28 28 O 1.22061 * 119.98796 * 180.26114 * 27 5 4 29 29 C 1.36400 * 120.36868 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.46770 * 269.97757 * 1 2 3 31 31 H 1.09002 * 109.47007 * 29.97834 * 1 2 3 32 32 H 1.09002 * 109.46918 * 149.97599 * 1 2 3 33 33 H 1.08000 * 120.02477 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.64874 * 180.02562 * 4 3 2 35 35 H 1.08999 * 109.47414 * 209.99537 * 6 5 4 36 36 H 1.08998 * 109.47062 * 330.00384 * 6 5 4 37 37 H 1.08997 * 110.37206 * 274.74865 * 10 9 7 38 38 H 1.09009 * 110.36700 * 37.07622 * 10 9 7 39 39 H 1.08998 * 109.47546 * 307.98007 * 13 11 10 40 40 H 1.09004 * 109.47318 * 67.98102 * 13 11 10 41 41 H 1.08996 * 109.47540 * 187.98034 * 13 11 10 42 42 H 1.08994 * 109.47513 * 299.97455 * 16 14 11 43 43 H 1.08996 * 109.46994 * 59.98496 * 16 14 11 44 44 H 0.97001 * 120.00168 * 359.97438 * 17 16 14 45 45 H 0.96995 * 120.00452 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.88112 * 300.44321 * 26 9 7 47 47 H 1.09006 * 109.88075 * 61.44706 * 26 9 7 48 48 H 1.08002 * 120.34439 * 359.95005 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 -0.0005 5 7 4.2539 0.0274 -0.0005 6 6 5.7188 0.0443 -0.0005 7 6 6.2211 0.0501 1.4203 8 8 5.4330 0.0415 2.3421 9 7 7.5461 0.0659 1.6667 10 6 8.6097 0.0722 0.6459 11 6 9.8350 0.7040 1.3572 12 1 9.7643 1.7916 1.3724 13 6 11.1407 0.2507 0.7012 14 6 9.6982 0.1177 2.7873 15 1 10.1236 -0.8847 2.8353 16 6 10.3598 1.0379 3.8151 17 7 10.2143 0.4597 5.1533 18 6 10.7313 1.1117 6.2408 19 1 11.2468 2.0520 6.1120 20 6 10.5939 0.5635 7.5087 21 7 9.9662 -0.5827 7.6657 22 14 11.2999 1.4526 8.9921 23 1 11.9530 2.7110 8.5504 24 1 10.2066 1.7701 9.9456 25 1 12.3019 0.5831 9.6596 26 6 8.1701 0.0737 2.9978 27 6 3.6018 -1.1508 0.0046 28 8 4.2313 -2.1965 0.0093 29 6 2.1967 -1.1769 -0.0005 30 1 -0.3632 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1344 -0.0001 35 1 6.0924 -0.8415 -0.5143 36 1 6.0718 0.9384 -0.5143 37 1 8.8360 -0.9454 0.3274 38 1 8.3121 0.6806 -0.2083 39 1 11.1560 -0.8373 0.6358 40 1 11.2112 0.6759 -0.3000 41 1 11.9855 0.5903 1.3004 42 1 11.4184 1.1450 3.5787 43 1 9.8806 2.0165 3.7882 44 1 9.7510 -0.3847 5.2690 45 1 9.8698 -0.9655 8.5516 46 1 7.8467 0.9538 3.5536 47 1 7.8945 -0.8299 3.5417 48 1 1.6683 -2.1188 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699971238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:48 Heat of formation + Delta-G solvation = -50.786683 kcal Electronic energy + Delta-G solvation = -28509.332640 eV Core-core repulsion = 24563.821203 eV Total energy + Delta-G solvation = -3945.511437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.57380 -41.11540 -39.17292 -38.13298 -36.50401 -36.25793 -34.34428 -33.07528 -31.71412 -30.85822 -30.26053 -28.32271 -27.26392 -26.65115 -24.91878 -24.68388 -22.81763 -22.36108 -21.22384 -20.67751 -19.21945 -18.60461 -18.58051 -18.33430 -17.36612 -17.01342 -16.71484 -16.67728 -16.17539 -15.61435 -15.43085 -15.21916 -15.19048 -15.01730 -14.95891 -14.35523 -14.20415 -14.09099 -13.65792 -13.60111 -13.38220 -13.33092 -13.28255 -13.04956 -12.97520 -12.83998 -12.80650 -12.49269 -12.47128 -12.11344 -11.97518 -11.88893 -11.58553 -11.36677 -11.33637 -11.13079 -10.98344 -10.61874 -9.82880 -9.03609 -9.01520 -7.97702 -5.27419 -0.15014 0.89383 1.33847 1.40690 1.44573 1.46224 1.56214 1.93980 2.53426 2.63596 3.25484 3.36539 3.44902 3.58130 3.66035 3.70225 3.75226 3.85115 4.02402 4.11329 4.12803 4.24934 4.31754 4.37417 4.40511 4.48594 4.53509 4.63718 4.77002 4.77311 4.81809 4.83460 4.87525 4.89530 5.00897 5.06227 5.11378 5.18069 5.22810 5.24819 5.37070 5.46812 5.47174 5.54739 5.64200 6.02347 6.23889 6.35618 6.88212 6.95757 7.29689 8.05779 8.27144 9.26291 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014177 B = 0.002489 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.555998 B =11245.805623 C =12485.036855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.033 3.967 3 C -0.230 4.230 4 C 0.138 3.862 5 N -0.485 5.485 6 C 0.083 3.917 7 C 0.504 3.496 8 O -0.587 6.587 9 N -0.610 5.610 10 C 0.096 3.904 11 C -0.084 4.084 12 H 0.099 0.901 13 C -0.136 4.136 14 C -0.092 4.092 15 H 0.079 0.921 16 C 0.165 3.835 17 N -0.749 5.749 18 C -0.242 4.242 19 H 0.081 0.919 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.976 3.024 23 H -0.261 1.261 24 H -0.296 1.296 25 H -0.293 1.293 26 C 0.124 3.876 27 C 0.501 3.499 28 O -0.612 6.612 29 C -0.293 4.293 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.184 0.816 34 H 0.204 0.796 35 H 0.130 0.870 36 H 0.181 0.819 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.036 0.964 43 H 0.021 0.979 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.048 0.952 47 H 0.030 0.970 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 8.736 -27.532 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 C -0.252 4.252 4 C 0.013 3.987 5 N -0.194 5.194 6 C -0.041 4.041 7 C 0.293 3.707 8 O -0.467 6.467 9 N -0.343 5.343 10 C -0.025 4.025 11 C -0.104 4.104 12 H 0.117 0.883 13 C -0.194 4.194 14 C -0.111 4.111 15 H 0.097 0.903 16 C 0.039 3.961 17 N -0.392 5.392 18 C -0.374 4.374 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.804 3.196 23 H -0.185 1.185 24 H -0.224 1.224 25 H -0.220 1.220 26 C 0.001 3.999 27 C 0.307 3.693 28 O -0.500 6.500 29 C -0.315 4.315 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.201 0.799 34 H 0.220 0.780 35 H 0.148 0.852 36 H 0.199 0.801 37 H 0.102 0.898 38 H 0.143 0.857 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.039 0.961 44 H 0.202 0.798 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.049 0.951 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.117 8.237 -27.018 30.735 hybrid contribution 0.153 -0.726 1.967 2.102 sum -11.964 7.511 -25.051 28.759 Atomic orbital electron populations 1.21044 0.87904 1.05002 1.03968 1.20664 0.98591 0.92086 0.85742 1.21082 0.92434 0.99850 1.11825 1.22719 0.94498 0.89666 0.91855 1.45113 1.07903 1.07565 1.58824 1.21987 0.79061 1.09992 0.93085 1.21192 0.81030 0.76001 0.92513 1.90753 1.55858 1.51978 1.48083 1.48582 1.05167 1.71761 1.08839 1.22931 0.85501 1.02875 0.91170 1.22411 0.95610 1.01147 0.91186 0.88289 1.21692 0.94620 1.01675 1.01387 1.22390 0.91686 1.00407 0.96653 0.90285 1.20797 0.97605 0.94417 0.83289 1.42654 1.68141 1.25755 1.02602 1.19702 1.27668 1.03137 0.86859 0.90156 1.25650 1.02516 0.98426 1.00712 1.69845 1.49407 1.20955 1.22224 0.85038 0.77160 0.78072 0.79287 1.18513 1.22379 1.21969 1.21731 0.93757 0.99912 0.84501 1.17547 0.90387 0.82688 0.78685 1.90899 1.70269 1.32303 1.56577 1.21906 0.91525 1.00879 1.17146 0.89462 0.88098 0.90396 0.79861 0.77961 0.85180 0.80142 0.89783 0.85695 0.92331 0.89363 0.92618 0.94564 0.96059 0.79808 0.94116 0.93397 0.95149 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.03 71.24 0.71 -0.41 16 2 C 0.03 0.55 5.89 -19.82 -0.12 0.43 16 3 C -0.23 -2.84 9.71 22.08 0.21 -2.63 16 4 C 0.14 1.92 10.28 83.42 0.86 2.78 16 5 N -0.48 -10.75 2.07 -655.06 -1.36 -12.10 16 6 C 0.08 1.53 4.81 85.64 0.41 1.94 16 7 C 0.50 14.87 7.91 87.66 0.69 15.57 16 8 O -0.59 -24.27 16.76 -3.03 -0.05 -24.32 16 9 N -0.61 -16.52 3.32 -811.36 -2.70 -19.22 16 10 C 0.10 1.53 6.16 86.94 0.54 2.07 16 11 C -0.08 -1.56 3.10 -9.32 -0.03 -1.59 16 12 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 13 C -0.14 -1.98 9.31 71.98 0.67 -1.31 16 14 C -0.09 -2.80 2.48 -9.61 -0.02 -2.82 16 15 H 0.08 2.54 8.04 -2.39 -0.02 2.53 16 16 C 0.17 6.34 5.58 86.38 0.48 6.82 16 17 N -0.75 -38.81 5.45 -343.45 -1.87 -40.68 16 18 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 20 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 21 N -0.97 -62.16 13.06 21.65 0.28 -61.88 16 22 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 25 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 26 C 0.12 4.43 6.15 86.73 0.53 4.96 16 27 C 0.50 15.30 7.40 84.82 0.63 15.92 16 28 O -0.61 -24.16 16.64 -5.51 -0.09 -24.25 16 29 C -0.29 -7.26 9.65 22.40 0.22 -7.05 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.42 8.10 -2.39 -0.02 0.40 16 32 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 33 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 34 H 0.20 0.97 8.04 -2.91 -0.02 0.95 16 35 H 0.13 2.43 7.39 -2.39 -0.02 2.41 16 36 H 0.18 0.98 7.72 -2.39 -0.02 0.96 16 37 H 0.08 1.25 7.99 -2.39 -0.02 1.23 16 38 H 0.13 0.82 7.48 -2.38 -0.02 0.80 16 39 H 0.06 0.87 8.07 -2.39 -0.02 0.85 16 40 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.02 0.83 8.06 -2.39 -0.02 0.81 16 44 H 0.37 20.95 7.52 -92.71 -0.70 20.25 16 45 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 46 H 0.05 1.96 7.76 -2.39 -0.02 1.94 16 47 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -93.75 397.42 3.59 -90.16 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.26 Total: 25.57 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 7.09 Total: 17.45 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -5.64 Total: -133.88 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.14 Total: -48.57 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -93.75 3.59 -90.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699971238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.374 kcal (2) G-P(sol) polarization free energy of solvation -93.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds