Wall clock time and date at job start Tue Mar 31 2020 18:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40202 * 120.36997 * 2 1 4 4 C 1.35346 * 119.94878 * 179.76878 * 3 2 1 5 5 N 1.35758 * 120.70531 * 0.50975 * 4 3 2 6 6 C 1.46502 * 119.62825 * 179.76158 * 5 4 3 7 7 C 1.50698 * 109.47106 * 269.73001 * 6 5 4 8 8 O 1.21288 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00019 * 179.97438 * 7 6 5 10 10 C 1.48427 * 127.98028 * 0.08868 * 9 7 6 11 11 C 1.54395 * 104.65420 * 140.36956 * 10 9 7 12 12 H 1.08995 * 110.34161 * 142.73488 * 11 10 9 13 13 C 1.52999 * 110.43018 * 264.95170 * 11 10 9 14 14 C 1.54289 * 104.95718 * 23.86731 * 11 10 9 15 15 H 1.09003 * 110.34028 * 118.87198 * 14 11 10 16 16 C 1.53005 * 110.43052 * 241.08491 * 14 11 10 17 17 N 1.46499 * 109.47024 * 182.04452 * 16 14 11 18 18 C 1.36932 * 119.99648 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00350 * 359.97438 * 18 17 16 20 20 C 1.38821 * 119.99894 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99918 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47213 * 60.00071 * 22 20 18 24 24 H 1.48501 * 109.47157 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47166 * 299.99677 * 22 20 18 26 26 C 1.48146 * 127.83592 * 179.97438 * 9 7 6 27 27 C 1.34668 * 120.74693 * 359.48736 * 5 4 3 28 28 O 1.22062 * 119.98162 * 180.27525 * 27 5 4 29 29 C 1.36407 * 120.37162 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46876 * 269.97331 * 1 2 3 31 31 H 1.08998 * 109.46890 * 29.97963 * 1 2 3 32 32 H 1.09005 * 109.47155 * 149.98014 * 1 2 3 33 33 H 1.07999 * 120.01807 * 0.04665 * 3 2 1 34 34 H 1.08001 * 119.64738 * 180.27797 * 4 3 2 35 35 H 1.09000 * 109.47328 * 149.72638 * 6 5 4 36 36 H 1.09004 * 109.46875 * 29.72452 * 6 5 4 37 37 H 1.09004 * 110.39413 * 21.57624 * 10 9 7 38 38 H 1.09006 * 110.49084 * 259.21655 * 10 9 7 39 39 H 1.08995 * 109.46710 * 175.58769 * 13 11 10 40 40 H 1.08998 * 109.46899 * 295.58862 * 13 11 10 41 41 H 1.09001 * 109.47281 * 55.58761 * 13 11 10 42 42 H 1.09003 * 109.46614 * 302.04330 * 16 14 11 43 43 H 1.09001 * 109.46921 * 62.04346 * 16 14 11 44 44 H 0.96994 * 119.99737 * 359.97438 * 17 16 14 45 45 H 0.96993 * 120.00655 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.40776 * 100.80198 * 26 9 7 47 47 H 1.09002 * 110.40863 * 338.48606 * 26 9 7 48 48 H 1.08000 * 120.34231 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2539 0.0274 -0.0009 6 6 5.7188 0.0442 -0.0009 7 6 6.2211 0.0500 -1.4217 8 8 5.4330 0.0406 -2.3436 9 7 7.5461 0.0658 -1.6679 10 6 8.6578 0.0773 -0.6846 11 6 9.7236 -0.8623 -1.2889 12 1 10.7239 -0.4769 -1.0920 13 6 9.5764 -2.2741 -0.7179 14 6 9.4386 -0.8646 -2.8053 15 1 10.2991 -0.4804 -3.3531 16 6 9.0933 -2.2770 -3.2816 17 7 8.8747 -2.2640 -4.7302 18 6 8.5507 -3.4227 -5.3841 19 1 8.4567 -4.3461 -4.8321 20 6 8.3441 -3.4105 -6.7568 21 7 8.4592 -2.2852 -7.4296 22 14 7.9029 -4.9912 -7.6489 23 1 6.6334 -5.5316 -7.0999 24 1 7.7369 -4.7120 -9.0980 25 1 8.9882 -5.9867 -7.4583 26 6 8.2257 0.0732 -2.9843 27 6 3.6016 -1.1508 -0.0009 28 8 4.2313 -2.1965 -0.0009 29 6 2.1966 -1.1769 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6821 2.1486 0.0008 34 1 4.1103 2.1344 0.0093 35 1 6.0923 -0.8415 0.5130 36 1 6.0718 0.9384 0.5130 37 1 8.3173 -0.3038 0.2782 38 1 9.0586 1.0849 -0.5735 39 1 10.2833 -2.9410 -1.2114 40 1 9.7805 -2.2560 0.3527 41 1 8.5606 -2.6309 -0.8881 42 1 9.9158 -2.9517 -3.0443 43 1 8.1874 -2.6181 -2.7805 44 1 8.9588 -1.4345 -5.2258 45 1 8.3145 -2.2765 -8.3887 46 1 8.5582 1.0806 -3.2347 47 1 7.5601 -0.3099 -3.7579 48 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699971289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:55 Heat of formation + Delta-G solvation = -13.715903 kcal Electronic energy + Delta-G solvation = -29252.039561 eV Core-core repulsion = 25308.135633 eV Total energy + Delta-G solvation = -3943.903927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.59103 -39.96495 -37.96831 -37.08866 -35.35178 -34.55177 -32.81737 -31.17249 -30.77442 -29.74072 -28.96734 -27.38844 -26.37973 -24.94645 -23.84905 -23.16919 -22.00691 -21.63343 -19.58730 -18.97102 -17.68368 -17.62390 -17.46199 -16.82403 -16.31023 -16.12758 -15.62501 -14.88059 -14.78698 -14.50133 -14.34945 -14.18396 -13.72092 -13.64552 -13.59605 -13.46332 -12.98469 -12.79516 -12.78391 -12.54799 -12.32114 -12.17897 -11.94580 -11.89239 -11.78716 -11.71196 -11.49864 -10.93168 -10.78412 -10.60936 -10.39717 -10.27384 -10.18654 -10.00374 -9.88111 -9.62911 -9.58279 -8.77640 -8.63712 -8.07446 -6.83368 -5.68428 -2.96424 0.68907 1.78132 2.30589 2.58386 3.01331 3.51262 3.55076 3.56945 3.58354 4.28262 4.30420 4.40213 4.53266 4.54104 4.67339 4.78946 4.85621 4.90202 4.91953 5.04743 5.16481 5.28332 5.31061 5.35710 5.38712 5.45795 5.58133 5.59319 5.65773 5.76287 5.79204 5.82955 5.91407 6.01686 6.08272 6.11641 6.21908 6.22482 6.37175 6.38330 6.47188 6.55690 6.80978 6.94819 6.96631 7.57119 7.78247 7.98770 8.15110 8.50590 9.61603 10.18694 10.53094 11.54632 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.003341 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.762735 B = 8379.315174 C = 9960.945613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.012 3.988 3 C -0.230 4.230 4 C 0.144 3.856 5 N -0.483 5.483 6 C 0.077 3.923 7 C 0.519 3.481 8 O -0.519 6.519 9 N -0.616 5.616 10 C 0.101 3.899 11 C -0.098 4.098 12 H 0.085 0.915 13 C -0.148 4.148 14 C -0.106 4.106 15 H 0.087 0.913 16 C 0.161 3.839 17 N -0.732 5.732 18 C -0.237 4.237 19 H 0.068 0.932 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.110 3.890 27 C 0.521 3.479 28 O -0.545 6.545 29 C -0.245 4.245 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.382 0.618 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 13.215 22.845 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 C -0.253 4.253 4 C 0.017 3.983 5 N -0.193 5.193 6 C -0.049 4.049 7 C 0.306 3.694 8 O -0.394 6.394 9 N -0.351 5.351 10 C -0.022 4.022 11 C -0.118 4.118 12 H 0.103 0.897 13 C -0.206 4.206 14 C -0.125 4.125 15 H 0.105 0.895 16 C 0.034 3.966 17 N -0.376 5.376 18 C -0.368 4.368 19 H 0.086 0.914 20 C -0.209 4.209 21 N -0.584 5.584 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.012 4.012 27 C 0.323 3.677 28 O -0.427 6.427 29 C -0.266 4.266 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.040 0.960 44 H 0.216 0.784 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.117 0.883 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.147 12.338 22.317 26.483 hybrid contribution -0.099 -0.465 -0.822 0.950 sum -7.246 11.873 21.494 25.602 Atomic orbital electron populations 1.20917 0.90396 1.03637 1.02906 1.20191 0.96744 0.92665 0.89508 1.20491 0.92311 0.98875 1.13648 1.21848 0.93620 0.89421 0.93392 1.45058 1.07120 1.07349 1.59817 1.21741 0.79724 1.06923 0.96505 1.20149 0.81121 0.77243 0.90924 1.90811 1.53996 1.48911 1.45712 1.48937 1.03918 1.72684 1.09538 1.22618 0.87291 0.99781 0.92525 1.22075 0.98302 0.96154 0.95222 0.89672 1.21928 1.03244 0.95878 0.99504 1.22356 0.97617 0.97933 0.94615 0.89452 1.20802 0.97410 0.92015 0.86377 1.42374 1.84484 1.09316 1.01463 1.19162 1.39132 0.88140 0.90364 0.91368 1.24715 1.02747 0.97004 0.96478 1.69639 1.56568 1.24851 1.07297 0.86271 0.78351 0.82889 0.78742 1.21255 1.21685 1.21307 1.22497 0.94220 0.98887 0.85603 1.17107 0.89391 0.82449 0.78719 1.90986 1.69052 1.30189 1.52464 1.21932 0.92237 0.99616 1.12837 0.90219 0.90787 0.90783 0.83789 0.82312 0.85392 0.86401 0.90523 0.90759 0.91489 0.93185 0.91896 0.95852 0.96048 0.78424 0.93544 0.91484 0.88273 0.83529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.03 36.00 0.36 -0.45 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.96 9.71 -39.88 -0.39 -2.34 16 4 C 0.14 1.32 10.28 -16.85 -0.17 1.14 16 5 N -0.48 -6.09 2.07 -121.06 -0.25 -6.34 16 6 C 0.08 0.86 4.81 -5.19 -0.02 0.83 16 7 C 0.52 8.21 7.98 -10.98 -0.09 8.12 16 8 O -0.52 -10.96 16.70 5.55 0.09 -10.87 16 9 N -0.62 -8.74 3.33 -169.08 -0.56 -9.30 16 10 C 0.10 0.98 6.48 -2.25 -0.01 0.97 16 11 C -0.10 -1.12 3.65 -89.21 -0.33 -1.44 16 12 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.15 -1.81 7.93 37.16 0.29 -1.51 16 14 C -0.11 -1.66 3.13 -89.23 -0.28 -1.94 16 15 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 16 C 0.16 3.37 4.43 -4.04 -0.02 3.35 16 17 N -0.73 -19.36 5.12 -59.91 -0.31 -19.66 16 18 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -29.40 13.06 55.49 0.72 -28.68 16 22 Si 0.91 23.69 29.55 -169.99 -5.02 18.66 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C 0.11 1.81 6.39 -2.42 -0.02 1.79 16 27 C 0.52 8.30 7.40 -15.45 -0.11 8.18 16 28 O -0.55 -10.89 16.64 4.86 0.08 -10.81 16 29 C -0.24 -3.20 9.65 -39.38 -0.38 -3.58 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.16 0.85 8.03 -52.49 -0.42 0.43 16 35 H 0.13 1.46 7.21 -51.93 -0.37 1.09 16 36 H 0.12 0.71 8.01 -51.93 -0.42 0.30 16 37 H 0.08 0.59 7.05 -51.93 -0.37 0.22 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.87 6.75 -51.93 -0.35 0.52 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.93 6.86 -51.93 -0.36 0.57 16 42 H 0.02 0.49 6.68 -51.93 -0.35 0.14 16 43 H 0.02 0.50 6.93 -51.93 -0.36 0.14 16 44 H 0.38 10.48 7.39 -40.82 -0.30 10.17 16 45 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.10 2.15 7.07 -51.93 -0.37 1.78 16 48 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -40.35 390.33 -8.82 -49.17 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.43 Total: 6.99 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.03 Total: 4.96 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.40 Total: -63.99 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.17 Total: -21.68 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.02 Total: 18.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.35 -8.82 -49.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699971289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.458 kcal (2) G-P(sol) polarization free energy of solvation -40.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds