Wall clock time and date at job start Tue Mar 31 2020 18:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40202 * 120.36997 * 2 1 4 4 C 1.35346 * 119.94878 * 179.76878 * 3 2 1 5 5 N 1.35758 * 120.70531 * 0.50975 * 4 3 2 6 6 C 1.46502 * 119.62825 * 179.76158 * 5 4 3 7 7 C 1.50698 * 109.47106 * 269.73001 * 6 5 4 8 8 O 1.21288 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00019 * 179.97438 * 7 6 5 10 10 C 1.48427 * 127.98028 * 0.08868 * 9 7 6 11 11 C 1.54395 * 104.65420 * 140.36956 * 10 9 7 12 12 H 1.08995 * 110.34161 * 142.73488 * 11 10 9 13 13 C 1.52999 * 110.43018 * 264.95170 * 11 10 9 14 14 C 1.54289 * 104.95718 * 23.86731 * 11 10 9 15 15 H 1.09003 * 110.34028 * 118.87198 * 14 11 10 16 16 C 1.53005 * 110.43052 * 241.08491 * 14 11 10 17 17 N 1.46499 * 109.47024 * 182.04452 * 16 14 11 18 18 C 1.36932 * 119.99648 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00350 * 359.97438 * 18 17 16 20 20 C 1.38821 * 119.99894 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99918 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00052 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47213 * 60.00071 * 22 20 18 24 24 H 1.48501 * 109.47157 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47166 * 299.99677 * 22 20 18 26 26 C 1.48146 * 127.83592 * 179.97438 * 9 7 6 27 27 C 1.34668 * 120.74693 * 359.48736 * 5 4 3 28 28 O 1.22062 * 119.98162 * 180.27525 * 27 5 4 29 29 C 1.36407 * 120.37162 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.46876 * 269.97331 * 1 2 3 31 31 H 1.08998 * 109.46890 * 29.97963 * 1 2 3 32 32 H 1.09005 * 109.47155 * 149.98014 * 1 2 3 33 33 H 1.07999 * 120.01807 * 0.04665 * 3 2 1 34 34 H 1.08001 * 119.64738 * 180.27797 * 4 3 2 35 35 H 1.09000 * 109.47328 * 149.72638 * 6 5 4 36 36 H 1.09004 * 109.46875 * 29.72452 * 6 5 4 37 37 H 1.09004 * 110.39413 * 21.57624 * 10 9 7 38 38 H 1.09006 * 110.49084 * 259.21655 * 10 9 7 39 39 H 1.08995 * 109.46710 * 175.58769 * 13 11 10 40 40 H 1.08998 * 109.46899 * 295.58862 * 13 11 10 41 41 H 1.09001 * 109.47281 * 55.58761 * 13 11 10 42 42 H 1.09003 * 109.46614 * 302.04330 * 16 14 11 43 43 H 1.09001 * 109.46921 * 62.04346 * 16 14 11 44 44 H 0.96994 * 119.99737 * 359.97438 * 17 16 14 45 45 H 0.96993 * 120.00655 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.40776 * 100.80198 * 26 9 7 47 47 H 1.09002 * 110.40863 * 338.48606 * 26 9 7 48 48 H 1.08000 * 120.34231 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0047 5 7 4.2539 0.0274 -0.0009 6 6 5.7188 0.0442 -0.0009 7 6 6.2211 0.0500 -1.4217 8 8 5.4330 0.0406 -2.3436 9 7 7.5461 0.0658 -1.6679 10 6 8.6578 0.0773 -0.6846 11 6 9.7236 -0.8623 -1.2889 12 1 10.7239 -0.4769 -1.0920 13 6 9.5764 -2.2741 -0.7179 14 6 9.4386 -0.8646 -2.8053 15 1 10.2991 -0.4804 -3.3531 16 6 9.0933 -2.2770 -3.2816 17 7 8.8747 -2.2640 -4.7302 18 6 8.5507 -3.4227 -5.3841 19 1 8.4567 -4.3461 -4.8321 20 6 8.3441 -3.4105 -6.7568 21 7 8.4592 -2.2852 -7.4296 22 14 7.9029 -4.9912 -7.6489 23 1 6.6334 -5.5316 -7.0999 24 1 7.7369 -4.7120 -9.0980 25 1 8.9882 -5.9867 -7.4583 26 6 8.2257 0.0732 -2.9843 27 6 3.6016 -1.1508 -0.0009 28 8 4.2313 -2.1965 -0.0009 29 6 2.1966 -1.1769 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6821 2.1486 0.0008 34 1 4.1103 2.1344 0.0093 35 1 6.0923 -0.8415 0.5130 36 1 6.0718 0.9384 0.5130 37 1 8.3173 -0.3038 0.2782 38 1 9.0586 1.0849 -0.5735 39 1 10.2833 -2.9410 -1.2114 40 1 9.7805 -2.2560 0.3527 41 1 8.5606 -2.6309 -0.8881 42 1 9.9158 -2.9517 -3.0443 43 1 8.1874 -2.6181 -2.7805 44 1 8.9588 -1.4345 -5.2258 45 1 8.3145 -2.2765 -8.3887 46 1 8.5582 1.0806 -3.2347 47 1 7.5601 -0.3099 -3.7579 48 1 1.6683 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699971289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:52 Heat of formation + Delta-G solvation = -43.232666 kcal Electronic energy + Delta-G solvation = -29253.319503 eV Core-core repulsion = 25308.135633 eV Total energy + Delta-G solvation = -3945.183870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.56111 -41.11713 -39.23632 -38.14349 -36.44985 -36.25558 -34.29616 -32.90247 -31.70733 -30.81626 -30.20573 -28.50898 -27.30860 -26.62745 -24.83698 -24.68644 -23.46020 -22.56652 -20.66475 -20.33090 -19.22352 -18.62303 -18.57421 -18.23119 -17.48579 -17.04709 -16.85217 -16.66638 -15.88621 -15.83906 -15.47739 -15.39163 -15.19377 -15.02058 -14.64390 -14.39870 -14.20293 -14.02960 -13.74644 -13.65871 -13.43438 -13.27164 -13.06798 -13.04213 -12.91830 -12.87740 -12.79265 -12.68868 -12.49344 -12.26155 -11.93709 -11.70326 -11.61433 -11.35555 -11.23547 -11.13685 -10.94923 -10.60773 -9.79679 -9.05289 -9.01800 -8.02440 -5.30748 -0.15170 0.89209 1.36142 1.37939 1.42910 1.44998 1.48576 1.98572 2.49278 2.63975 3.28843 3.31765 3.55416 3.59724 3.68163 3.72491 3.80013 3.86131 4.02253 4.10078 4.15272 4.30541 4.30800 4.33194 4.36681 4.54658 4.59645 4.67111 4.75571 4.79040 4.81399 4.83984 4.87602 4.90199 4.92942 5.06608 5.10076 5.12630 5.22055 5.25369 5.36068 5.40767 5.46071 5.57080 5.64752 6.02379 6.20809 6.46661 6.92090 6.99844 7.26276 8.02630 8.26034 9.20903 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010633 B = 0.003341 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.762735 B = 8379.315174 C = 9960.945613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.034 3.966 3 C -0.231 4.231 4 C 0.140 3.860 5 N -0.485 5.485 6 C 0.083 3.917 7 C 0.509 3.491 8 O -0.589 6.589 9 N -0.614 5.614 10 C 0.100 3.900 11 C -0.089 4.089 12 H 0.127 0.873 13 C -0.147 4.147 14 C -0.100 4.100 15 H 0.097 0.903 16 C 0.165 3.835 17 N -0.744 5.744 18 C -0.252 4.252 19 H 0.065 0.935 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.972 3.028 23 H -0.287 1.287 24 H -0.287 1.287 25 H -0.271 1.271 26 C 0.111 3.889 27 C 0.499 3.501 28 O -0.614 6.614 29 C -0.297 4.297 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.187 0.813 34 H 0.208 0.792 35 H 0.124 0.876 36 H 0.184 0.816 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.024 0.976 42 H 0.029 0.971 43 H -0.008 1.008 44 H 0.374 0.626 45 H 0.253 0.747 46 H 0.094 0.906 47 H 0.034 0.966 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 16.345 25.579 31.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 C -0.252 4.252 4 C 0.014 3.986 5 N -0.194 5.194 6 C -0.041 4.041 7 C 0.297 3.703 8 O -0.470 6.470 9 N -0.348 5.348 10 C -0.020 4.020 11 C -0.108 4.108 12 H 0.145 0.855 13 C -0.205 4.205 14 C -0.120 4.120 15 H 0.115 0.885 16 C 0.039 3.961 17 N -0.386 5.386 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.265 4.265 21 N -0.617 5.617 22 Si 0.801 3.199 23 H -0.214 1.214 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.012 4.012 27 C 0.305 3.695 28 O -0.502 6.502 29 C -0.318 4.318 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.204 0.796 34 H 0.224 0.776 35 H 0.141 0.859 36 H 0.201 0.799 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.010 0.990 44 H 0.206 0.794 45 H 0.062 0.938 46 H 0.112 0.888 47 H 0.053 0.947 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.505 15.504 25.123 30.231 hybrid contribution -0.337 -1.353 -1.640 2.152 sum -6.842 14.152 23.484 28.259 Atomic orbital electron populations 1.21043 0.87848 1.04470 1.04501 1.20676 0.98629 0.92061 0.85631 1.21095 0.92451 0.99768 1.11934 1.22766 0.94490 0.89626 0.91696 1.45109 1.07966 1.07565 1.58753 1.21966 0.79020 1.09739 0.93395 1.21059 0.81087 0.75881 0.92233 1.90771 1.55852 1.52206 1.48127 1.49064 1.04582 1.71391 1.09737 1.23025 0.84957 1.01911 0.92152 1.22160 1.01217 0.96248 0.91212 0.85511 1.21908 1.00474 0.96235 1.01848 1.22291 0.97428 0.93932 0.98300 0.88479 1.20890 0.95966 0.96022 0.83229 1.42575 1.84332 1.08073 1.03659 1.19530 1.38682 0.89132 0.91043 0.91673 1.25563 1.03294 1.00403 0.97284 1.69790 1.57776 1.26811 1.07276 0.85236 0.78131 0.79249 0.77325 1.21386 1.21274 1.19684 1.22324 0.93316 1.00010 0.85560 1.17573 0.90429 0.82773 0.78735 1.90918 1.70310 1.32481 1.56526 1.21887 0.91545 1.00922 1.17478 0.87985 0.88580 0.91308 0.79575 0.77568 0.85860 0.79863 0.87676 0.86289 0.92867 0.89556 0.95675 0.95351 0.99028 0.79387 0.93824 0.88755 0.94703 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 10.03 71.23 0.71 -0.65 16 2 C 0.03 0.64 5.89 -19.82 -0.12 0.52 16 3 C -0.23 -3.19 9.71 22.08 0.21 -2.98 16 4 C 0.14 2.15 10.28 83.42 0.86 3.00 16 5 N -0.48 -11.99 2.07 -655.06 -1.36 -13.35 16 6 C 0.08 1.73 4.81 85.63 0.41 2.14 16 7 C 0.51 16.18 7.98 87.66 0.70 16.88 16 8 O -0.59 -26.37 16.70 -3.06 -0.05 -26.42 16 9 N -0.61 -16.85 3.33 -807.24 -2.69 -19.53 16 10 C 0.10 1.52 6.48 86.48 0.56 2.08 16 11 C -0.09 -1.75 3.65 -9.88 -0.04 -1.79 16 12 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 13 C -0.15 -3.39 7.93 71.98 0.57 -2.81 16 14 C -0.10 -3.11 3.13 -9.89 -0.03 -3.14 16 15 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 16 C 0.17 7.25 4.43 86.38 0.38 7.63 16 17 N -0.74 -41.48 5.12 -343.44 -1.76 -43.24 16 18 C -0.25 -15.61 9.99 84.04 0.84 -14.77 16 19 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.07 -4.55 5.50 84.86 0.47 -4.08 16 21 N -0.97 -62.85 13.06 21.65 0.28 -62.56 16 22 Si 0.97 50.09 29.55 68.60 2.03 52.12 16 23 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 25 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 26 C 0.11 3.72 6.39 86.52 0.55 4.27 16 27 C 0.50 17.05 7.40 84.82 0.63 17.68 16 28 O -0.61 -27.12 16.64 -5.52 -0.09 -27.21 16 29 C -0.30 -8.36 9.65 22.40 0.22 -8.14 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.69 8.10 -2.39 -0.02 0.68 16 32 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 33 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.21 1.08 8.03 -2.91 -0.02 1.05 16 35 H 0.12 2.74 7.21 -2.39 -0.02 2.73 16 36 H 0.18 1.25 8.01 -2.39 -0.02 1.23 16 37 H 0.10 1.08 7.05 -2.38 -0.02 1.06 16 38 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.05 1.35 6.75 -2.39 -0.02 1.33 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.02 0.75 6.86 -2.39 -0.02 0.74 16 42 H 0.03 1.23 6.68 -2.39 -0.02 1.21 16 43 H -0.01 -0.41 6.93 -2.39 -0.02 -0.42 16 44 H 0.37 21.69 7.39 -92.71 -0.68 21.01 16 45 H 0.25 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.03 1.62 7.07 -2.39 -0.02 1.60 16 48 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -101.37 390.33 3.58 -97.80 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.28 Total: 26.54 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.93 Total: 15.86 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -5.52 Total: -138.68 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.14 Total: -53.63 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.03 Total: 52.12 kcal Total: -101.37 3.58 -97.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699971289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.564 kcal (2) G-P(sol) polarization free energy of solvation -101.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds