Wall clock time and date at job start Tue Mar 31 2020 17:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38671 * 120.78992 * 2 1 4 4 C 1.38182 * 119.16665 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.76099 * 359.97438 * 4 3 2 6 6 C 1.31854 * 121.72766 * 0.02562 * 5 4 3 7 7 C 1.38219 * 120.76545 * 0.27127 * 6 5 4 8 8 C 1.50697 * 120.42254 * 179.70181 * 7 6 5 9 9 C 1.50698 * 109.47368 * 265.00458 * 8 7 6 10 10 O 1.21281 * 119.99984 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00048 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00285 * 174.64663 * 11 9 8 13 13 C 1.52999 * 109.49680 * 302.66318 * 12 11 9 14 14 O 1.42905 * 109.46987 * 301.66877 * 13 12 11 15 15 C 1.53045 * 109.49287 * 62.72158 * 12 11 9 16 16 C 1.53036 * 109.53863 * 58.59141 * 15 12 11 17 17 C 1.53195 * 109.31592 * 61.36044 * 16 15 12 18 18 N 1.46924 * 108.77337 * 305.36863 * 17 16 15 19 19 C 1.36944 * 120.62996 * 233.62680 * 18 17 16 20 20 H 1.07994 * 120.00142 * 149.66248 * 19 18 17 21 21 C 1.38815 * 119.99615 * 329.66610 * 19 18 17 22 22 N 1.31618 * 119.99660 * 161.51246 * 21 19 18 23 23 Si 1.86801 * 120.00220 * 341.51137 * 21 19 18 24 24 H 1.48493 * 109.47393 * 92.83562 * 23 21 19 25 25 H 1.48499 * 109.46747 * 212.83656 * 23 21 19 26 26 H 1.48503 * 109.46903 * 332.83242 * 23 21 19 27 27 C 1.46919 * 118.73990 * 53.60581 * 18 17 16 28 28 H 1.08997 * 109.47150 * 89.99897 * 1 2 3 29 29 H 1.08997 * 109.46861 * 209.99874 * 1 2 3 30 30 H 1.09005 * 109.46855 * 329.99869 * 1 2 3 31 31 H 1.08003 * 120.42244 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.62080 * 180.02562 * 4 3 2 33 33 H 1.08007 * 119.61679 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.46771 * 25.00505 * 8 7 6 35 35 H 1.09005 * 109.47075 * 145.00067 * 8 7 6 36 36 H 0.96998 * 119.99968 * 354.64145 * 11 9 8 37 37 H 1.09000 * 109.47566 * 61.67083 * 13 12 11 38 38 H 1.09005 * 109.46846 * 181.67417 * 13 12 11 39 39 H 0.96697 * 113.99887 * 179.97438 * 14 13 12 40 40 H 1.09005 * 109.45945 * 178.60603 * 15 12 11 41 41 H 1.08997 * 109.46288 * 298.56819 * 15 12 11 42 42 H 1.08999 * 109.50218 * 181.31260 * 16 15 12 43 43 H 1.09000 * 109.49993 * 301.41049 * 16 15 12 44 44 H 1.08996 * 109.58501 * 65.15226 * 17 16 15 45 45 H 1.08997 * 109.59040 * 185.43622 * 17 16 15 46 46 H 0.97000 * 120.00197 * 179.97438 * 22 21 19 47 47 H 1.09006 * 109.58802 * 186.60361 * 27 18 17 48 48 H 1.09002 * 109.58937 * 66.18136 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5983 -1.1516 -0.0005 7 6 2.2167 -1.1909 -0.0062 8 6 1.4909 -2.5116 -0.0129 9 6 1.1462 -2.8882 -1.4307 10 8 1.4586 -2.1560 -2.3457 11 7 0.4898 -4.0381 -1.6819 12 6 0.0511 -4.3486 -3.0448 13 6 -0.8561 -3.2281 -3.5570 14 8 -1.9774 -3.0859 -2.6826 15 6 1.2727 -4.4746 -3.9582 16 6 2.1974 -5.5725 -3.4277 17 6 1.4505 -6.9100 -3.4319 18 7 0.2006 -6.7559 -2.6752 19 6 -0.1005 -7.6061 -1.6447 20 1 -0.6933 -7.2570 -0.8123 21 6 0.3565 -8.9166 -1.6701 22 7 0.3946 -9.6219 -0.5595 23 14 0.9174 -9.6792 -3.2805 24 1 2.3824 -9.4911 -3.4336 25 1 0.6023 -11.1303 -3.2772 26 1 0.2132 -9.0223 -4.4110 27 6 -0.7200 -5.6722 -3.0448 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6967 2.1378 0.0004 32 1 4.1583 2.0755 -0.0001 33 1 4.1586 -2.0749 -0.0001 34 1 2.1305 -3.2797 0.4219 35 1 0.5758 -2.4262 0.5732 36 1 0.3078 -4.6603 -0.9603 37 1 -0.2972 -2.2928 -3.5862 38 1 -1.2060 -3.4738 -4.5597 39 1 -2.5963 -2.3914 -2.9465 40 1 0.9472 -4.7299 -4.9667 41 1 1.8097 -3.5263 -3.9793 42 1 3.0784 -5.6458 -4.0653 43 1 2.5035 -5.3300 -2.4100 44 1 1.2231 -7.1982 -4.4582 45 1 2.0702 -7.6761 -2.9660 46 1 0.7135 -10.5378 -0.5773 47 1 -1.5335 -5.6210 -2.3211 48 1 -1.1244 -5.8595 -4.0395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699998593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:51 Heat of formation + Delta-G solvation = -27.351561 kcal Electronic energy + Delta-G solvation = -30391.660604 eV Core-core repulsion = 26447.165390 eV Total energy + Delta-G solvation = -3944.495214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68950 -39.87115 -37.68237 -36.24227 -34.46020 -33.93238 -32.69759 -32.23739 -30.89587 -30.36890 -28.42746 -27.27746 -25.81071 -25.21776 -23.08503 -22.22020 -22.03021 -21.29575 -20.17264 -18.86551 -17.14853 -16.94971 -16.84385 -16.78112 -16.48249 -15.73427 -15.34063 -15.04672 -14.89094 -14.45900 -13.96511 -13.87236 -13.82034 -13.45932 -13.36354 -13.23925 -13.01923 -12.93120 -12.78299 -12.73544 -12.36388 -12.23064 -11.83008 -11.72641 -11.53774 -11.42851 -11.39764 -10.82002 -10.67991 -10.28171 -10.03424 -9.92362 -9.74684 -9.54527 -9.50478 -9.47201 -9.31307 -8.93386 -8.64230 -8.56511 -7.00640 -6.01457 -3.41532 1.06658 1.22695 2.92719 3.29241 3.45210 3.45656 3.47862 3.85254 4.35278 4.38187 4.48139 4.58385 4.61982 4.81966 4.85077 4.88086 5.01811 5.23676 5.27913 5.32868 5.34685 5.35770 5.42680 5.49012 5.52449 5.56889 5.59900 5.71059 5.74785 5.82848 5.87876 6.01180 6.03630 6.15859 6.21360 6.28238 6.30181 6.41421 6.56086 6.61937 6.67208 6.71605 6.85574 7.01065 7.73878 7.91227 7.94468 7.98715 8.25796 8.58298 8.86688 9.64928 10.03128 11.14081 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.003561 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.187478 B = 7861.121145 C = 8376.838501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.176 4.176 4 C 0.094 3.906 5 N -0.490 5.490 6 C 0.114 3.886 7 C -0.108 4.108 8 C -0.105 4.105 9 C 0.520 3.480 10 O -0.548 6.548 11 N -0.690 5.690 12 C 0.168 3.832 13 C 0.066 3.934 14 O -0.564 6.564 15 C -0.122 4.122 16 C -0.127 4.127 17 C 0.124 3.876 18 N -0.604 5.604 19 C -0.264 4.264 20 H 0.086 0.914 21 C 0.029 3.971 22 N -0.907 5.907 23 Si 0.885 3.115 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.151 3.849 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.410 0.590 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.370 0.630 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.024 0.976 45 H 0.071 0.929 46 H 0.263 0.737 47 H 0.077 0.923 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 19.340 -0.765 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.196 4.196 4 C -0.063 4.063 5 N -0.198 5.198 6 C -0.043 4.043 7 C -0.111 4.111 8 C -0.146 4.146 9 C 0.306 3.694 10 O -0.427 6.427 11 N -0.341 5.341 12 C 0.080 3.920 13 C -0.013 4.013 14 O -0.368 6.368 15 C -0.160 4.160 16 C -0.167 4.167 17 C -0.001 4.001 18 N -0.327 5.327 19 C -0.392 4.392 20 H 0.103 0.897 21 C -0.171 4.171 22 N -0.550 5.550 23 Si 0.715 3.285 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.196 1.196 27 C 0.024 3.976 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.246 0.754 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.216 0.784 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.101 19.165 -1.007 19.223 hybrid contribution -0.883 -0.461 -0.946 1.374 sum 0.218 18.704 -1.954 18.807 Atomic orbital electron populations 1.20856 0.90413 1.03005 1.03152 1.20128 0.96650 0.92426 0.94244 1.21950 0.95613 0.98369 1.03680 1.22666 0.91756 0.96193 0.95673 1.67667 1.41122 0.98441 1.12608 1.22614 0.90974 0.96256 0.94447 1.20179 0.94862 0.94355 1.01667 1.20651 1.02351 0.95337 0.96244 1.20219 0.77525 0.81286 0.90334 1.90606 1.53894 1.52088 1.46098 1.45812 1.56829 1.20597 1.10836 1.20891 0.93575 0.95380 0.82203 1.22615 0.87174 0.99455 0.92068 1.86519 1.36716 1.59882 1.53645 1.21776 0.96227 1.00232 0.97777 1.21905 0.97373 0.96379 1.01021 1.21372 0.88160 0.95591 0.95005 1.44354 1.16465 1.33718 1.38209 1.18863 1.33313 0.90336 0.96728 0.89691 1.25325 0.99042 0.96101 0.96619 1.69804 1.48932 1.10503 1.25712 0.86911 0.77890 0.77730 0.85921 1.21616 1.23209 1.19552 1.21119 0.92091 0.85015 0.99361 0.90265 0.90826 0.91308 0.85122 0.83110 0.82992 0.87702 0.87683 0.75430 0.91794 0.93596 0.78432 0.92095 0.90467 0.92821 0.91821 0.95801 0.91054 0.92707 0.90495 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.67 36.01 0.35 -0.75 16 2 C -0.03 -0.30 5.92 -104.32 -0.62 -0.92 16 3 C -0.18 -1.83 9.82 -39.44 -0.39 -2.22 16 4 C 0.09 1.05 11.18 -17.55 -0.20 0.86 16 5 N -0.49 -6.65 10.36 -13.25 -0.14 -6.79 16 6 C 0.11 1.50 10.84 -17.55 -0.19 1.31 16 7 C -0.11 -1.35 4.39 -104.48 -0.46 -1.81 16 8 C -0.11 -1.24 5.40 -29.04 -0.16 -1.40 16 9 C 0.52 7.61 7.23 -10.99 -0.08 7.53 16 10 O -0.55 -9.26 12.31 5.56 0.07 -9.19 16 11 N -0.69 -10.69 4.02 -47.50 -0.19 -10.88 16 12 C 0.17 2.70 0.45 -131.70 -0.06 2.64 16 13 C 0.07 0.92 5.67 37.16 0.21 1.13 16 14 O -0.56 -7.38 13.01 -35.23 -0.46 -7.84 16 15 C -0.12 -1.99 4.51 -26.69 -0.12 -2.11 16 16 C -0.13 -2.27 5.93 -26.61 -0.16 -2.43 16 17 C 0.12 2.61 4.19 -3.71 -0.02 2.59 16 18 N -0.60 -13.35 2.60 -172.33 -0.45 -13.79 16 19 C -0.26 -6.89 10.02 -15.05 -0.15 -7.04 16 20 H 0.09 2.35 8.06 -52.49 -0.42 1.92 16 21 C 0.03 0.79 5.25 -17.43 -0.09 0.70 16 22 N -0.91 -26.75 13.97 55.49 0.78 -25.98 16 23 Si 0.88 21.88 24.36 -169.99 -4.14 17.74 16 24 H -0.29 -6.95 6.67 56.52 0.38 -6.57 16 25 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 26 H -0.27 -6.59 6.58 56.52 0.37 -6.22 16 27 C 0.15 2.83 5.03 -3.72 -0.02 2.81 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 30 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.15 1.79 8.06 -52.48 -0.42 1.36 16 34 H 0.10 1.11 8.06 -51.93 -0.42 0.70 16 35 H 0.11 1.06 6.28 -51.93 -0.33 0.74 16 36 H 0.41 6.66 8.43 -40.82 -0.34 6.32 16 37 H 0.06 0.95 6.21 -51.93 -0.32 0.63 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.37 3.16 9.12 45.56 0.42 3.57 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.31 6.23 -51.93 -0.32 0.99 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.18 7.53 -51.93 -0.39 0.79 16 44 H 0.02 0.51 6.98 -51.93 -0.36 0.14 16 45 H 0.07 1.65 4.74 -51.93 -0.25 1.40 16 46 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 47 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -32.49 373.31 -7.50 -40.00 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.46 Total: 10.22 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -2.14 Total: 0.89 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.00 Total: -57.43 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.39 Total: -17.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.49 -7.50 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699998593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.645 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds