Wall clock time and date at job start Tue Mar 31 2020 17:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38671 * 120.78992 * 2 1 4 4 C 1.38182 * 119.16665 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.76099 * 359.97438 * 4 3 2 6 6 C 1.31854 * 121.72766 * 0.02562 * 5 4 3 7 7 C 1.38219 * 120.76545 * 0.27127 * 6 5 4 8 8 C 1.50697 * 120.42254 * 179.70181 * 7 6 5 9 9 C 1.50698 * 109.47368 * 265.00458 * 8 7 6 10 10 O 1.21281 * 119.99984 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00048 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00285 * 174.64663 * 11 9 8 13 13 C 1.52999 * 109.49680 * 302.66318 * 12 11 9 14 14 O 1.42905 * 109.46987 * 301.66877 * 13 12 11 15 15 C 1.53045 * 109.49287 * 62.72158 * 12 11 9 16 16 C 1.53036 * 109.53863 * 58.59141 * 15 12 11 17 17 C 1.53195 * 109.31592 * 61.36044 * 16 15 12 18 18 N 1.46924 * 108.77337 * 305.36863 * 17 16 15 19 19 C 1.36944 * 120.62996 * 233.62680 * 18 17 16 20 20 H 1.07994 * 120.00142 * 149.66248 * 19 18 17 21 21 C 1.38815 * 119.99615 * 329.66610 * 19 18 17 22 22 N 1.31618 * 119.99660 * 161.51246 * 21 19 18 23 23 Si 1.86801 * 120.00220 * 341.51137 * 21 19 18 24 24 H 1.48493 * 109.47393 * 92.83562 * 23 21 19 25 25 H 1.48499 * 109.46747 * 212.83656 * 23 21 19 26 26 H 1.48503 * 109.46903 * 332.83242 * 23 21 19 27 27 C 1.46919 * 118.73990 * 53.60581 * 18 17 16 28 28 H 1.08997 * 109.47150 * 89.99897 * 1 2 3 29 29 H 1.08997 * 109.46861 * 209.99874 * 1 2 3 30 30 H 1.09005 * 109.46855 * 329.99869 * 1 2 3 31 31 H 1.08003 * 120.42244 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.62080 * 180.02562 * 4 3 2 33 33 H 1.08007 * 119.61679 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.46771 * 25.00505 * 8 7 6 35 35 H 1.09005 * 109.47075 * 145.00067 * 8 7 6 36 36 H 0.96998 * 119.99968 * 354.64145 * 11 9 8 37 37 H 1.09000 * 109.47566 * 61.67083 * 13 12 11 38 38 H 1.09005 * 109.46846 * 181.67417 * 13 12 11 39 39 H 0.96697 * 113.99887 * 179.97438 * 14 13 12 40 40 H 1.09005 * 109.45945 * 178.60603 * 15 12 11 41 41 H 1.08997 * 109.46288 * 298.56819 * 15 12 11 42 42 H 1.08999 * 109.50218 * 181.31260 * 16 15 12 43 43 H 1.09000 * 109.49993 * 301.41049 * 16 15 12 44 44 H 1.08996 * 109.58501 * 65.15226 * 17 16 15 45 45 H 1.08997 * 109.59040 * 185.43622 * 17 16 15 46 46 H 0.97000 * 120.00197 * 179.97438 * 22 21 19 47 47 H 1.09006 * 109.58802 * 186.60361 * 27 18 17 48 48 H 1.09002 * 109.58937 * 66.18136 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5983 -1.1516 -0.0005 7 6 2.2167 -1.1909 -0.0062 8 6 1.4909 -2.5116 -0.0129 9 6 1.1462 -2.8882 -1.4307 10 8 1.4586 -2.1560 -2.3457 11 7 0.4898 -4.0381 -1.6819 12 6 0.0511 -4.3486 -3.0448 13 6 -0.8561 -3.2281 -3.5570 14 8 -1.9774 -3.0859 -2.6826 15 6 1.2727 -4.4746 -3.9582 16 6 2.1974 -5.5725 -3.4277 17 6 1.4505 -6.9100 -3.4319 18 7 0.2006 -6.7559 -2.6752 19 6 -0.1005 -7.6061 -1.6447 20 1 -0.6933 -7.2570 -0.8123 21 6 0.3565 -8.9166 -1.6701 22 7 0.3946 -9.6219 -0.5595 23 14 0.9174 -9.6792 -3.2805 24 1 2.3824 -9.4911 -3.4336 25 1 0.6023 -11.1303 -3.2772 26 1 0.2132 -9.0223 -4.4110 27 6 -0.7200 -5.6722 -3.0448 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6967 2.1378 0.0004 32 1 4.1583 2.0755 -0.0001 33 1 4.1586 -2.0749 -0.0001 34 1 2.1305 -3.2797 0.4219 35 1 0.5758 -2.4262 0.5732 36 1 0.3078 -4.6603 -0.9603 37 1 -0.2972 -2.2928 -3.5862 38 1 -1.2060 -3.4738 -4.5597 39 1 -2.5963 -2.3914 -2.9465 40 1 0.9472 -4.7299 -4.9667 41 1 1.8097 -3.5263 -3.9793 42 1 3.0784 -5.6458 -4.0653 43 1 2.5035 -5.3300 -2.4100 44 1 1.2231 -7.1982 -4.4582 45 1 2.0702 -7.6761 -2.9660 46 1 0.7135 -10.5378 -0.5773 47 1 -1.5335 -5.6210 -2.3211 48 1 -1.1244 -5.8595 -4.0395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699998593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:50 Heat of formation + Delta-G solvation = -51.326075 kcal Electronic energy + Delta-G solvation = -30392.700217 eV Core-core repulsion = 26447.165390 eV Total energy + Delta-G solvation = -3945.534827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74443 -40.96982 -39.02562 -37.44347 -35.55467 -35.23533 -34.08895 -33.40409 -32.66290 -31.67331 -29.29793 -28.18495 -27.39698 -26.76733 -24.06320 -23.73443 -23.14361 -22.64708 -21.40354 -20.14862 -18.73200 -18.22663 -18.09615 -17.72689 -17.33635 -17.20448 -16.91754 -16.14243 -15.97985 -15.57730 -15.46804 -15.24616 -15.14794 -14.84495 -14.50431 -14.45830 -14.20689 -14.02269 -13.81680 -13.72136 -13.62103 -13.50839 -13.29468 -13.21742 -12.94477 -12.70802 -12.51283 -12.22396 -12.17080 -11.97513 -11.66265 -11.45994 -11.36083 -11.04282 -10.74082 -10.46316 -10.37581 -10.28519 -9.86476 -9.80213 -8.87736 -8.14021 -5.49061 0.19048 0.35716 1.31990 1.43024 1.50747 1.78407 2.33347 2.43783 2.91698 3.09194 3.26564 3.35762 3.52702 3.71623 3.83839 3.85548 3.95879 4.00236 4.02379 4.13117 4.19609 4.24053 4.42384 4.49154 4.51651 4.57698 4.61860 4.64236 4.72440 4.76780 4.77316 4.80628 4.83775 4.91997 4.98815 5.02733 5.07330 5.11577 5.22651 5.26336 5.37215 5.46599 5.73516 5.83824 5.90918 6.16207 6.75471 6.91464 6.95911 7.06272 7.39435 7.62759 8.04664 9.05140 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.003561 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.187478 B = 7861.121145 C = 8376.838501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.037 4.037 3 C -0.174 4.174 4 C 0.084 3.916 5 N -0.517 5.517 6 C 0.093 3.907 7 C -0.120 4.120 8 C -0.100 4.100 9 C 0.524 3.476 10 O -0.568 6.568 11 N -0.694 5.694 12 C 0.169 3.831 13 C 0.077 3.923 14 O -0.576 6.576 15 C -0.116 4.116 16 C -0.119 4.119 17 C 0.121 3.879 18 N -0.612 5.612 19 C -0.241 4.241 20 H 0.061 0.939 21 C -0.027 4.027 22 N -0.954 5.954 23 Si 0.940 3.060 24 H -0.280 1.280 25 H -0.315 1.315 26 H -0.261 1.261 27 C 0.154 3.846 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.178 0.822 33 H 0.153 0.847 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.404 0.596 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.392 0.608 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.031 0.969 45 H 0.048 0.952 46 H 0.260 0.740 47 H 0.065 0.935 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 21.675 -2.064 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.045 4.045 3 C -0.193 4.193 4 C -0.072 4.072 5 N -0.227 5.227 6 C -0.063 4.063 7 C -0.123 4.123 8 C -0.140 4.140 9 C 0.311 3.689 10 O -0.449 6.449 11 N -0.344 5.344 12 C 0.081 3.919 13 C -0.002 4.002 14 O -0.383 6.383 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.003 4.003 18 N -0.336 5.336 19 C -0.370 4.370 20 H 0.079 0.921 21 C -0.222 4.222 22 N -0.600 5.600 23 Si 0.770 3.230 24 H -0.207 1.207 25 H -0.245 1.245 26 H -0.185 1.185 27 C 0.028 3.972 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.180 0.820 32 H 0.195 0.805 33 H 0.171 0.829 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.239 0.761 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.240 0.760 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.646 21.555 -2.343 21.691 hybrid contribution -0.793 -1.045 -0.505 1.405 sum -0.147 20.510 -2.848 20.707 Atomic orbital electron populations 1.20866 0.88948 1.04260 1.02937 1.20489 0.97851 0.92446 0.93733 1.22310 0.95415 0.99371 1.02205 1.23199 0.92683 0.96441 0.94925 1.67658 1.42095 0.99231 1.13690 1.22747 0.91602 0.96515 0.95422 1.20254 0.94697 0.94975 1.02323 1.20635 1.03265 0.95498 0.94596 1.20568 0.76627 0.80490 0.91207 1.90592 1.54652 1.52571 1.47056 1.45851 1.57190 1.20866 1.10459 1.20822 0.93711 0.94707 0.82695 1.22413 0.87123 0.98030 0.92674 1.86471 1.36898 1.61106 1.53856 1.21725 0.95893 0.99342 0.98433 1.21794 0.98031 0.95001 1.01005 1.21385 0.87561 0.96769 0.94615 1.44403 1.17791 1.33822 1.37615 1.18815 1.30935 0.90545 0.96749 0.92149 1.25868 1.00585 0.96859 0.98918 1.69923 1.51767 1.10747 1.27547 0.86011 0.78034 0.76132 0.82847 1.20696 1.24467 1.18545 1.21172 0.91580 0.85110 0.99290 0.91017 0.90705 0.89018 0.82046 0.80487 0.82938 0.86958 0.85968 0.76079 0.92379 0.91947 0.75962 0.90660 0.90666 0.90912 0.92989 0.95065 0.93353 0.93109 0.91601 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.67 71.24 0.69 -1.16 16 2 C -0.04 -0.78 5.92 -19.67 -0.12 -0.89 16 3 C -0.17 -3.19 9.82 22.36 0.22 -2.97 16 4 C 0.08 1.74 11.18 84.67 0.95 2.69 16 5 N -0.52 -13.76 10.36 -195.84 -2.03 -15.79 16 6 C 0.09 2.44 10.84 84.68 0.92 3.36 16 7 C -0.12 -2.88 4.39 -19.77 -0.09 -2.96 16 8 C -0.10 -2.26 5.40 29.10 0.16 -2.10 16 9 C 0.52 14.74 7.23 87.66 0.63 15.37 16 10 O -0.57 -18.46 12.31 -3.03 -0.04 -18.50 16 11 N -0.69 -20.80 4.02 -422.58 -1.70 -22.50 16 12 C 0.17 5.12 0.45 3.68 0.00 5.12 16 13 C 0.08 1.95 5.67 71.98 0.41 2.36 16 14 O -0.58 -13.72 13.01 -148.98 -1.94 -15.66 16 15 C -0.12 -3.52 4.51 30.62 0.14 -3.38 16 16 C -0.12 -4.04 5.93 30.67 0.18 -3.86 16 17 C 0.12 4.93 4.19 86.36 0.36 5.29 16 18 N -0.61 -26.57 2.60 -699.12 -1.82 -28.39 16 19 C -0.24 -12.69 10.02 84.03 0.84 -11.84 16 20 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 21 C -0.03 -1.51 5.25 84.86 0.45 -1.07 16 22 N -0.95 -57.79 13.97 21.65 0.30 -57.49 16 23 Si 0.94 45.42 24.36 68.60 1.67 47.09 16 24 H -0.28 -12.99 6.67 99.48 0.66 -12.33 16 25 H -0.32 -15.73 7.11 99.48 0.71 -15.02 16 26 H -0.26 -12.04 6.58 99.48 0.65 -11.39 16 27 C 0.15 5.54 5.03 86.36 0.43 5.98 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.18 6.17 -2.39 -0.01 1.16 16 30 H 0.09 1.04 8.10 -2.38 -0.02 1.02 16 31 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 34 H 0.11 2.35 8.06 -2.39 -0.02 2.33 16 35 H 0.12 2.30 6.28 -2.38 -0.01 2.29 16 36 H 0.40 13.04 8.43 -92.71 -0.78 12.26 16 37 H 0.06 1.59 6.21 -2.39 -0.01 1.57 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.39 5.58 9.12 -74.06 -0.68 4.90 16 40 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.07 2.39 6.23 -2.39 -0.01 2.37 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.88 7.53 -2.39 -0.02 1.86 16 44 H 0.03 1.24 6.98 -2.39 -0.02 1.22 16 45 H 0.05 2.19 4.74 -2.39 -0.01 2.18 16 46 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 47 H 0.07 2.52 7.70 -2.38 -0.02 2.50 16 48 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -70.25 373.31 0.07 -70.17 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.56 Total: 31.13 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.17 Total: 9.94 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -5.24 Total: -124.17 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.97 Total: -34.15 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.09 kcal Total: -70.25 0.07 -70.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699998593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.845 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds