Wall clock time and date at job start Tue Mar 31 2020 17:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38604 * 120.33020 * 2 1 4 4 N 1.31493 * 120.90327 * 179.74591 * 3 2 1 5 5 C 1.32739 * 121.64290 * 0.56228 * 4 3 2 6 6 C 1.48169 * 119.72447 * 179.70676 * 5 4 3 7 7 O 1.21519 * 120.00291 * 179.72674 * 6 5 4 8 8 N 1.34779 * 119.99686 * 359.73415 * 6 5 4 9 9 C 1.46506 * 119.99789 * 184.72500 * 8 6 5 10 10 C 1.52997 * 109.49744 * 57.31552 * 9 8 6 11 11 O 1.42906 * 109.46947 * 55.95803 * 10 9 8 12 12 C 1.53041 * 109.49623 * 297.25005 * 9 8 6 13 13 C 1.53037 * 109.54128 * 301.41682 * 12 9 8 14 14 C 1.53199 * 109.33817 * 298.61877 * 13 12 9 15 15 N 1.46991 * 108.73667 * 54.61993 * 14 13 12 16 16 C 1.36944 * 120.61335 * 126.38993 * 15 14 13 17 17 H 1.08002 * 119.99873 * 332.12702 * 16 15 14 18 18 C 1.38810 * 119.99975 * 152.13265 * 16 15 14 19 19 N 1.31613 * 120.00071 * 342.81881 * 18 16 15 20 20 Si 1.86805 * 119.99866 * 162.82854 * 18 16 15 21 21 H 1.48491 * 109.47139 * 89.99534 * 20 18 16 22 22 H 1.48502 * 109.46813 * 209.99460 * 20 18 16 23 23 H 1.48493 * 109.46998 * 329.99275 * 20 18 16 24 24 C 1.46925 * 118.75694 * 306.41227 * 15 14 13 25 25 C 1.39274 * 120.55465 * 359.43836 * 5 4 3 26 26 C 1.38584 * 120.32248 * 180.02562 * 2 1 3 27 27 C 1.50703 * 120.75632 * 359.95806 * 26 2 1 28 28 H 1.09004 * 109.47208 * 269.98293 * 1 2 3 29 29 H 1.08998 * 109.46995 * 29.97147 * 1 2 3 30 30 H 1.08993 * 109.47398 * 149.98286 * 1 2 3 31 31 H 1.08001 * 119.54625 * 0.04262 * 3 2 1 32 32 H 0.96994 * 119.99937 * 4.72808 * 8 6 5 33 33 H 1.08999 * 109.47128 * 175.95364 * 10 9 8 34 34 H 1.08998 * 109.47007 * 295.95807 * 10 9 8 35 35 H 0.96701 * 113.99640 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.45915 * 181.39386 * 12 9 8 37 37 H 1.09004 * 109.44818 * 61.42906 * 12 9 8 38 38 H 1.08998 * 109.50051 * 58.58711 * 13 12 9 39 39 H 1.09000 * 109.50288 * 178.65474 * 13 12 9 40 40 H 1.08996 * 109.58709 * 174.43915 * 14 13 12 41 41 H 1.08993 * 109.58467 * 294.86424 * 14 13 12 42 42 H 0.97000 * 120.00094 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58789 * 293.81779 * 24 15 14 44 44 H 1.09002 * 109.58610 * 173.39568 * 24 15 14 45 45 H 1.08003 * 120.46837 * 180.29016 * 25 5 4 46 46 H 1.08994 * 109.47040 * 270.01827 * 27 26 2 47 47 H 1.08995 * 109.46937 * 30.02339 * 27 26 2 48 48 H 1.09002 * 109.47036 * 150.02091 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1963 0.0000 4 7 3.5217 1.2095 0.0050 5 6 4.2294 0.0865 -0.0009 6 6 5.7097 0.1510 -0.0014 7 8 6.3626 -0.8740 -0.0018 8 7 6.3321 1.3464 -0.0014 9 6 7.7919 1.4122 -0.1065 10 6 8.2443 0.7041 -1.3851 11 8 7.5831 1.2852 -2.5108 12 6 8.4228 0.7267 1.1076 13 6 7.9444 1.4131 2.3890 14 6 8.3902 2.8787 2.3763 15 7 7.9090 3.5079 1.1380 16 6 7.1694 4.6595 1.1828 17 1 6.5610 4.8773 2.0482 18 6 7.2016 5.5469 0.1159 19 7 8.1700 5.4732 -0.7724 20 14 5.8707 6.8460 -0.0589 21 1 6.2853 8.0790 0.6573 22 1 5.6657 7.1542 -1.4971 23 1 4.6031 6.3375 0.5239 24 6 8.2360 2.8777 -0.1483 25 6 3.5922 -1.1519 -0.0009 26 6 2.2066 -1.1963 -0.0005 27 6 1.4778 -2.5153 -0.0002 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6649 2.1305 0.0007 32 1 5.8136 2.1631 0.0682 33 1 9.3225 0.8151 -1.4999 34 1 7.9926 -0.3546 -1.3225 35 1 7.8223 0.8842 -3.3576 36 1 9.5084 0.7976 1.0413 37 1 8.1279 -0.3226 1.1259 38 1 6.8569 1.3641 2.4437 39 1 8.3752 0.9093 3.2543 40 1 7.9687 3.3964 3.2379 41 1 9.4783 2.9299 2.4131 42 1 8.1927 6.0936 -1.5177 43 1 9.3116 2.9289 -0.3174 44 1 7.7126 3.3953 -0.9522 45 1 4.1694 -2.0648 -0.0009 46 1 1.3025 -2.8332 1.0275 47 1 0.5230 -2.4030 -0.5137 48 1 2.0809 -3.2638 -0.5141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700002948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:59 Heat of formation + Delta-G solvation = -54.199642 kcal Electronic energy + Delta-G solvation = -30413.747950 eV Core-core repulsion = 26468.088516 eV Total energy + Delta-G solvation = -3945.659434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.88616 -40.88428 -38.83940 -37.40191 -35.69413 -35.36670 -34.15627 -33.39026 -32.01407 -31.43089 -29.32968 -28.00546 -27.33292 -26.67172 -24.33733 -23.95177 -23.75761 -22.31330 -21.30884 -20.10272 -18.97230 -18.57771 -18.22146 -17.79758 -16.96744 -16.37663 -16.33065 -16.17424 -15.98852 -15.80028 -15.47337 -15.15475 -15.01553 -14.70939 -14.60655 -14.19909 -14.10683 -13.87560 -13.69871 -13.65578 -13.52642 -13.41268 -13.08961 -12.93034 -12.74127 -12.69929 -12.53004 -12.42208 -12.23935 -11.99807 -11.71561 -11.54840 -11.33517 -11.15931 -10.73053 -10.52854 -10.48039 -10.34161 -10.00656 -9.74951 -8.67211 -7.85540 -5.30306 -0.34003 0.23157 1.46171 1.49449 1.58419 1.76863 2.22451 2.52572 2.86367 3.20063 3.30191 3.31500 3.65017 3.71288 3.74908 3.89858 3.93549 4.06542 4.10611 4.22857 4.31436 4.34129 4.44778 4.53980 4.59550 4.65305 4.71132 4.75676 4.79072 4.82365 4.89655 4.91741 4.94711 5.01570 5.07963 5.12998 5.17859 5.22529 5.30750 5.37781 5.46806 5.61704 5.70024 5.73080 5.74136 6.39985 6.61341 6.88931 6.90908 7.15059 7.26621 7.85332 8.38108 9.20435 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010890 B = 0.004584 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.489359 B = 6106.885066 C = 7434.295252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 C 0.085 3.915 4 N -0.487 5.487 5 C 0.049 3.951 6 C 0.566 3.434 7 O -0.568 6.568 8 N -0.667 5.667 9 C 0.153 3.847 10 C 0.074 3.926 11 O -0.580 6.580 12 C -0.114 4.114 13 C -0.117 4.117 14 C 0.140 3.860 15 N -0.604 5.604 16 C -0.261 4.261 17 H 0.064 0.936 18 C -0.041 4.041 19 N -0.928 5.928 20 Si 0.959 3.041 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.270 1.270 24 C 0.192 3.808 25 C -0.116 4.116 26 C -0.056 4.056 27 C -0.113 4.113 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.177 0.823 32 H 0.407 0.593 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.388 0.612 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.249 0.751 43 H 0.011 0.989 44 H 0.067 0.933 45 H 0.147 0.853 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.723 -16.324 0.545 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.114 4.114 3 C -0.075 4.075 4 N -0.198 5.198 5 C -0.087 4.087 6 C 0.352 3.648 7 O -0.449 6.449 8 N -0.314 5.314 9 C 0.066 3.934 10 C -0.005 4.005 11 O -0.387 6.387 12 C -0.153 4.153 13 C -0.156 4.156 14 C 0.015 3.985 15 N -0.327 5.327 16 C -0.391 4.391 17 H 0.082 0.918 18 C -0.237 4.237 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.195 1.195 24 C 0.066 3.934 25 C -0.137 4.137 26 C -0.064 4.064 27 C -0.169 4.169 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.194 0.806 32 H 0.243 0.757 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.237 0.763 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.085 0.915 45 H 0.164 0.836 46 H 0.110 0.890 47 H 0.116 0.884 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.969 -15.733 0.889 20.408 hybrid contribution -0.285 0.541 -0.733 0.955 sum -13.254 -15.191 0.156 20.161 Atomic orbital electron populations 1.20924 0.86875 1.04859 1.04100 1.21418 0.99730 0.92574 0.97681 1.23187 0.88620 0.99518 0.96153 1.67542 1.10340 1.30914 1.11012 1.21122 0.93722 0.90674 1.03221 1.18183 0.86652 0.83648 0.76316 1.90604 1.66311 1.34650 1.53324 1.45717 1.07346 1.08349 1.70001 1.21205 0.79898 0.98431 0.93898 1.22500 0.95787 0.96654 0.85534 1.86556 1.70486 1.63865 1.17799 1.21718 1.00071 0.99845 0.93626 1.21798 1.00017 0.96504 0.97260 1.21099 0.95987 0.92363 0.89031 1.44246 1.61732 1.25717 1.01028 1.19379 1.18804 0.96889 1.04042 0.91834 1.25678 0.99202 0.99471 0.99368 1.70151 1.31877 1.39433 1.15852 0.85402 0.80082 0.79353 0.76409 1.21116 1.22180 1.19514 1.20633 0.96081 0.87553 0.89175 1.22087 0.95486 0.97938 0.98224 1.20600 0.92286 0.97704 0.95765 1.20960 1.00858 0.90880 1.04230 0.89115 0.89925 0.88946 0.80584 0.75736 0.92230 0.91993 0.76337 0.90809 0.90687 0.94007 0.90029 0.92768 0.96120 0.94213 0.97154 0.91470 0.83570 0.89012 0.88434 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.65 71.23 0.69 -0.46 16 2 C -0.11 -2.19 5.91 -19.70 -0.12 -2.31 16 3 C 0.09 2.23 10.86 84.83 0.92 3.15 16 4 N -0.49 -16.95 9.55 -184.91 -1.77 -18.72 16 5 C 0.05 1.72 6.75 41.90 0.28 2.00 16 6 C 0.57 22.34 7.22 86.88 0.63 22.97 16 7 O -0.57 -22.78 12.62 -3.78 -0.05 -22.83 16 8 N -0.67 -28.23 3.96 -425.09 -1.68 -29.91 16 9 C 0.15 6.36 0.45 3.68 0.00 6.37 16 10 C 0.07 2.75 5.62 71.98 0.40 3.16 16 11 O -0.58 -22.08 13.05 -148.98 -1.94 -24.02 16 12 C -0.11 -4.24 4.52 30.62 0.14 -4.11 16 13 C -0.12 -4.34 5.93 30.67 0.18 -4.16 16 14 C 0.14 6.03 6.52 86.35 0.56 6.59 16 15 N -0.60 -30.79 2.86 -698.93 -2.00 -32.80 16 16 C -0.26 -14.52 9.58 84.03 0.81 -13.71 16 17 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 18 C -0.04 -2.32 4.91 84.86 0.42 -1.91 16 19 N -0.93 -55.52 11.19 21.65 0.24 -55.28 16 20 Si 0.96 45.87 29.59 68.60 2.03 47.90 16 21 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 C 0.19 9.56 3.85 86.36 0.33 9.89 16 25 C -0.12 -3.22 9.34 22.61 0.21 -3.01 16 26 C -0.06 -1.14 5.91 -19.69 -0.12 -1.25 16 27 C -0.11 -1.30 9.67 71.24 0.69 -0.61 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 30 H 0.09 0.62 6.06 -2.39 -0.01 0.61 16 31 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.41 19.18 7.76 -92.71 -0.72 18.46 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 2.26 6.26 -2.39 -0.01 2.25 16 35 H 0.39 10.44 9.12 -74.06 -0.68 9.77 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.07 2.78 6.25 -2.39 -0.01 2.76 16 38 H 0.04 1.68 7.53 -2.39 -0.02 1.66 16 39 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 3.87 5.87 -2.39 -0.01 3.85 16 45 H 0.15 3.85 7.64 -2.91 -0.02 3.83 16 46 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.10 0.70 6.07 -2.39 -0.01 0.68 16 48 H 0.08 0.84 8.10 -2.39 -0.02 0.82 16 Total: -1.00 -72.85 378.78 0.46 -72.39 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.40 Total: 40.66 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 6.03 Total: 22.60 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -5.21 Total: -136.70 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -1.99 Total: -46.85 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.85 0.46 -72.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700002948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.190 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds