Wall clock time and date at job start Tue Mar 31 2020 17:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47010 * 125.00156 * 7 6 5 9 9 O 1.21285 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62998 * 359.71749 * 10 8 7 12 12 C 1.52759 * 109.00986 * 233.58831 * 11 10 8 13 13 C 1.53049 * 109.38015 * 305.58722 * 12 11 10 14 14 C 1.53000 * 109.45652 * 181.25766 * 13 12 11 15 15 N 1.46496 * 109.44884 * 301.22710 * 13 12 11 16 16 C 1.36937 * 119.99767 * 300.05868 * 15 13 12 17 17 H 1.08000 * 120.00340 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00073 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00140 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00289 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47219 * 60.00084 * 20 18 16 22 22 H 1.48506 * 109.47264 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47187 * 300.00139 * 20 18 16 24 24 C 1.53039 * 109.53641 * 61.24068 * 13 12 11 25 25 C 1.46926 * 120.62993 * 180.02562 * 10 8 7 26 26 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 27 27 C 1.31846 * 121.78127 * 359.97438 * 26 6 5 28 28 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 29 29 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 31 31 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 33 33 H 1.08994 * 109.47425 * 245.00191 * 7 6 5 34 34 H 1.08998 * 109.47113 * 5.00393 * 7 6 5 35 35 H 1.09000 * 109.58596 * 353.41765 * 11 10 8 36 36 H 1.08999 * 109.58552 * 113.84442 * 11 10 8 37 37 H 1.08995 * 109.56897 * 185.55609 * 12 11 10 38 38 H 1.09007 * 109.38802 * 65.51082 * 12 11 10 39 39 H 1.08992 * 109.47380 * 299.93052 * 14 13 12 40 40 H 1.09001 * 109.47126 * 59.93632 * 14 13 12 41 41 H 1.09003 * 109.46506 * 179.97438 * 14 13 12 42 42 H 0.96991 * 120.00187 * 120.06350 * 15 13 12 43 43 H 0.97004 * 120.00540 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.49594 * 178.68378 * 24 13 12 45 45 H 1.09005 * 109.50126 * 58.58357 * 24 13 12 46 46 H 1.08999 * 109.58191 * 246.15316 * 25 10 8 47 47 H 1.08997 * 109.58692 * 6.43158 * 25 10 8 48 48 H 1.07995 * 119.65565 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 6 3.2972 5.8341 -1.1791 9 8 2.4860 5.3341 -1.9294 10 7 3.7192 7.0970 -1.3876 11 6 4.6977 7.7180 -0.4844 12 6 4.1366 9.0464 0.0196 13 6 3.7425 9.9174 -1.1756 14 6 3.2094 11.2608 -0.6735 15 7 4.9163 10.1438 -2.0224 16 6 6.0219 10.7666 -1.5077 17 1 6.0287 11.0906 -0.4774 18 6 7.1344 10.9806 -2.3097 19 7 7.1265 10.5854 -3.5652 20 14 8.6429 11.8296 -1.6075 21 1 9.1701 11.0385 -0.4667 22 1 9.6854 11.9370 -2.6597 23 1 8.2723 13.1888 -1.1379 24 6 2.6562 9.2096 -1.9887 25 6 3.2043 7.8812 -2.5183 26 7 1.8944 3.5574 -0.0021 27 6 1.3002 2.3805 0.0031 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0433 0.4030 0.0014 32 1 5.0932 2.6552 -0.0098 33 1 3.5942 5.5572 0.9160 34 1 4.9161 4.9472 -0.1081 35 1 4.8844 7.0572 0.3621 36 1 5.6284 7.8982 -1.0223 37 1 4.8934 9.5615 0.6111 38 1 3.2584 8.8573 0.6371 39 1 2.3357 11.0926 -0.0439 40 1 3.9830 11.7651 -0.0944 41 1 2.9291 11.8814 -1.5246 42 1 4.9104 9.8526 -2.9475 43 1 7.9038 10.7352 -4.1258 44 1 2.3594 9.8407 -2.8264 45 1 1.7920 9.0184 -1.3525 46 1 4.0106 8.0750 -3.2257 47 1 2.4079 7.3270 -3.0149 48 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700282597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:45 Heat of formation + Delta-G solvation = -19.345310 kcal Electronic energy + Delta-G solvation = -28993.274209 eV Core-core repulsion = 25049.126172 eV Total energy + Delta-G solvation = -3944.148037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.90950 -39.84067 -38.47494 -37.53020 -34.39223 -32.71740 -32.56246 -32.19826 -30.69174 -29.07509 -28.48288 -27.76211 -26.98506 -24.00929 -23.62148 -22.92999 -22.81464 -21.90856 -19.53737 -18.40433 -17.98816 -17.35228 -17.07899 -16.68845 -16.19757 -16.09088 -15.30340 -15.17049 -14.67409 -14.40831 -14.25173 -14.03591 -13.77314 -13.73020 -13.39800 -13.31048 -13.02915 -12.89772 -12.43327 -12.37518 -12.21290 -12.04586 -11.88691 -11.61421 -11.50209 -11.21878 -11.16726 -10.89359 -10.77293 -10.65998 -10.29673 -10.25103 -9.87323 -9.65477 -9.55305 -9.48509 -9.33913 -8.92963 -8.50654 -8.11327 -6.96308 -5.77638 -3.05987 0.95472 1.15448 2.88929 2.99856 3.32503 3.41012 3.46430 3.47632 3.72440 4.18259 4.45512 4.51548 4.57066 4.67128 4.80391 4.82459 4.97553 5.09392 5.18119 5.26963 5.32068 5.35508 5.40461 5.47918 5.50623 5.58822 5.65694 5.74397 5.79783 5.87013 5.92641 6.09622 6.11476 6.22935 6.30905 6.31819 6.44294 6.50128 6.54528 6.59817 6.81024 6.91344 6.94151 7.05104 7.11610 7.69538 7.85251 7.92680 8.40646 8.56436 9.52114 10.09728 10.45192 11.44756 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021584 B = 0.002494 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.928693 B =11225.587278 C =11838.111123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.068 3.932 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.112 3.888 7 C -0.088 4.088 8 C 0.519 3.481 9 O -0.539 6.539 10 N -0.601 5.601 11 C 0.114 3.886 12 C -0.135 4.135 13 C 0.197 3.803 14 C -0.150 4.150 15 N -0.716 5.716 16 C -0.231 4.231 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.288 1.288 24 C -0.128 4.128 25 C 0.118 3.882 26 N -0.419 5.419 27 C 0.025 3.975 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 -17.116 9.540 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.021 3.979 4 C -0.135 4.135 5 C -0.146 4.146 6 C -0.027 4.027 7 C -0.128 4.128 8 C 0.306 3.694 9 O -0.416 6.416 10 N -0.334 5.334 11 C -0.008 4.008 12 C -0.176 4.176 13 C 0.106 3.894 14 C -0.209 4.209 15 N -0.358 5.358 16 C -0.363 4.363 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.219 1.219 23 H -0.215 1.215 24 C -0.167 4.167 25 C -0.004 4.004 26 N -0.128 5.128 27 C -0.134 4.134 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.163 -16.747 9.205 22.131 hybrid contribution 1.262 -0.066 0.097 1.267 sum -9.901 -16.813 9.302 21.616 Atomic orbital electron populations 1.23110 0.78062 1.04196 1.01717 1.86053 1.21623 1.26231 1.88775 1.20089 0.93312 0.85698 0.98843 1.20848 0.91630 0.98698 1.02350 1.21826 1.01395 0.91619 0.99718 1.20530 0.89194 0.94449 0.98507 1.20583 1.01103 0.91548 0.99577 1.20137 0.81642 0.81675 0.85995 1.90677 1.33709 1.69564 1.47697 1.48075 1.43483 1.12684 1.29182 1.21657 0.92662 0.93920 0.92556 1.22230 1.00211 0.96008 0.99107 1.19530 0.87615 0.91993 0.90262 1.22219 0.99318 0.98963 1.00426 1.42503 1.11656 1.70511 1.11173 1.19067 0.91797 1.29846 0.95553 0.91242 1.24698 0.98321 1.01958 0.95900 1.69641 1.30243 1.52341 1.05836 0.86355 0.83170 0.79506 0.77643 1.21378 1.21879 1.21458 1.22066 0.98174 0.96005 1.00450 1.21507 0.99434 0.91244 0.88231 1.67304 1.11524 1.26164 1.07816 1.22867 1.00415 0.86986 1.03113 0.92305 0.88010 0.92420 0.84057 0.83927 0.87268 0.87383 0.91455 0.89198 0.90677 0.93331 0.94616 0.92592 0.93190 0.78141 0.93544 0.90945 0.91986 0.90693 0.90064 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.11 10.51 -19.46 -0.20 -3.32 16 3 C 0.07 0.76 6.71 -39.08 -0.26 0.50 16 4 C -0.11 -1.14 10.13 -39.13 -0.40 -1.54 16 5 C -0.13 -1.35 9.70 -39.46 -0.38 -1.74 16 6 C 0.11 1.49 5.76 -82.58 -0.48 1.01 16 7 C -0.09 -1.09 4.45 -29.03 -0.13 -1.22 16 8 C 0.52 8.52 7.63 -10.98 -0.08 8.43 16 9 O -0.54 -10.69 14.74 5.55 0.08 -10.61 16 10 N -0.60 -9.84 2.98 -173.06 -0.52 -10.36 16 11 C 0.11 1.79 6.06 -3.93 -0.02 1.76 16 12 C -0.14 -2.20 4.69 -26.83 -0.13 -2.33 16 13 C 0.20 3.59 0.74 -131.78 -0.10 3.49 16 14 C -0.15 -2.62 8.44 37.16 0.31 -2.31 16 15 N -0.72 -16.11 4.14 -47.19 -0.20 -16.30 16 16 C -0.23 -5.81 8.68 -15.06 -0.13 -5.94 16 17 H 0.07 1.70 6.70 -52.49 -0.35 1.35 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 20 Si 0.90 21.44 29.55 -169.99 -5.02 16.41 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.13 -2.12 4.96 -26.63 -0.13 -2.25 16 25 C 0.12 2.04 6.16 -3.73 -0.02 2.02 16 26 N -0.42 -6.19 9.21 -9.35 -0.09 -6.28 16 27 C 0.03 0.31 10.22 -17.37 -0.18 0.13 16 28 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.14 1.12 7.95 -52.49 -0.42 0.71 16 33 H 0.11 1.19 7.68 -51.93 -0.40 0.79 16 34 H 0.11 1.07 7.68 -51.93 -0.40 0.67 16 35 H 0.07 0.83 5.94 -51.93 -0.31 0.52 16 36 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 37 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 38 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 1.04 7.27 -51.93 -0.38 0.66 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.38 9.44 6.46 -40.82 -0.26 9.18 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.07 1.42 6.94 -51.93 -0.36 1.06 16 47 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 48 H 0.16 1.51 6.32 -52.49 -0.33 1.18 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -32.58 380.72 -7.96 -40.53 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -7.24 Total: 9.53 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.23 Total: 0.72 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.07 Total: -59.01 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.12 Total: -13.93 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.58 -7.96 -40.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700282597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.189 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds