Wall clock time and date at job start Tue Mar 31 2020 17:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47010 * 125.00156 * 7 6 5 9 9 O 1.21285 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62998 * 359.71749 * 10 8 7 12 12 C 1.52759 * 109.00986 * 233.58831 * 11 10 8 13 13 C 1.53049 * 109.38015 * 305.58722 * 12 11 10 14 14 C 1.53000 * 109.45652 * 181.25766 * 13 12 11 15 15 N 1.46496 * 109.44884 * 301.22710 * 13 12 11 16 16 C 1.36937 * 119.99767 * 300.05868 * 15 13 12 17 17 H 1.08000 * 120.00340 * 0.02562 * 16 15 13 18 18 C 1.38807 * 120.00073 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00140 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00289 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47219 * 60.00084 * 20 18 16 22 22 H 1.48506 * 109.47264 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47187 * 300.00139 * 20 18 16 24 24 C 1.53039 * 109.53641 * 61.24068 * 13 12 11 25 25 C 1.46926 * 120.62993 * 180.02562 * 10 8 7 26 26 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 27 27 C 1.31846 * 121.78127 * 359.97438 * 26 6 5 28 28 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 29 29 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 31 31 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 33 33 H 1.08994 * 109.47425 * 245.00191 * 7 6 5 34 34 H 1.08998 * 109.47113 * 5.00393 * 7 6 5 35 35 H 1.09000 * 109.58596 * 353.41765 * 11 10 8 36 36 H 1.08999 * 109.58552 * 113.84442 * 11 10 8 37 37 H 1.08995 * 109.56897 * 185.55609 * 12 11 10 38 38 H 1.09007 * 109.38802 * 65.51082 * 12 11 10 39 39 H 1.08992 * 109.47380 * 299.93052 * 14 13 12 40 40 H 1.09001 * 109.47126 * 59.93632 * 14 13 12 41 41 H 1.09003 * 109.46506 * 179.97438 * 14 13 12 42 42 H 0.96991 * 120.00187 * 120.06350 * 15 13 12 43 43 H 0.97004 * 120.00540 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.49594 * 178.68378 * 24 13 12 45 45 H 1.09005 * 109.50126 * 58.58357 * 24 13 12 46 46 H 1.08999 * 109.58191 * 246.15316 * 25 10 8 47 47 H 1.08997 * 109.58692 * 6.43158 * 25 10 8 48 48 H 1.07995 * 119.65565 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 6 3.2972 5.8341 -1.1791 9 8 2.4860 5.3341 -1.9294 10 7 3.7192 7.0970 -1.3876 11 6 4.6977 7.7180 -0.4844 12 6 4.1366 9.0464 0.0196 13 6 3.7425 9.9174 -1.1756 14 6 3.2094 11.2608 -0.6735 15 7 4.9163 10.1438 -2.0224 16 6 6.0219 10.7666 -1.5077 17 1 6.0287 11.0906 -0.4774 18 6 7.1344 10.9806 -2.3097 19 7 7.1265 10.5854 -3.5652 20 14 8.6429 11.8296 -1.6075 21 1 9.1701 11.0385 -0.4667 22 1 9.6854 11.9370 -2.6597 23 1 8.2723 13.1888 -1.1379 24 6 2.6562 9.2096 -1.9887 25 6 3.2043 7.8812 -2.5183 26 7 1.8944 3.5574 -0.0021 27 6 1.3002 2.3805 0.0031 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0433 0.4030 0.0014 32 1 5.0932 2.6552 -0.0098 33 1 3.5942 5.5572 0.9160 34 1 4.9161 4.9472 -0.1081 35 1 4.8844 7.0572 0.3621 36 1 5.6284 7.8982 -1.0223 37 1 4.8934 9.5615 0.6111 38 1 3.2584 8.8573 0.6371 39 1 2.3357 11.0926 -0.0439 40 1 3.9830 11.7651 -0.0944 41 1 2.9291 11.8814 -1.5246 42 1 4.9104 9.8526 -2.9475 43 1 7.9038 10.7352 -4.1258 44 1 2.3594 9.8407 -2.8264 45 1 1.7920 9.0184 -1.3525 46 1 4.0106 8.0750 -3.2257 47 1 2.4079 7.3270 -3.0149 48 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700282597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:44 Heat of formation + Delta-G solvation = -40.338999 kcal Electronic energy + Delta-G solvation = -28994.184564 eV Core-core repulsion = 25049.126172 eV Total energy + Delta-G solvation = -3945.058391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.79391 -41.06856 -39.45385 -38.76351 -35.93141 -34.20907 -33.49197 -33.38170 -31.98399 -30.82126 -29.55201 -28.69333 -27.93100 -25.82924 -24.61879 -24.16848 -24.00731 -22.97536 -20.86390 -19.47676 -19.10601 -18.92814 -18.32243 -17.80124 -17.21239 -16.79197 -16.59348 -16.42978 -16.11662 -15.62900 -15.42295 -15.16750 -15.07683 -14.91393 -14.80577 -14.48441 -14.07215 -13.98431 -13.92479 -13.51907 -13.23382 -13.04318 -12.94729 -12.77015 -12.74253 -12.63118 -12.58671 -12.49465 -12.29110 -12.17301 -11.99942 -11.76369 -11.42618 -11.05213 -10.86923 -10.73192 -10.60786 -10.32795 -9.51496 -9.33410 -8.85263 -7.81629 -5.07364 0.11917 0.32210 1.52787 1.54026 1.59363 1.75212 2.10993 2.24870 2.64497 2.80610 3.32336 3.52327 3.64452 3.67403 3.76038 3.88596 3.99633 4.03736 4.13643 4.23775 4.31832 4.36163 4.36769 4.39249 4.49292 4.53059 4.57222 4.66608 4.72171 4.74416 4.77423 4.85297 4.92144 4.96878 5.06173 5.08977 5.11963 5.15065 5.22813 5.39730 5.42502 5.52991 5.61204 5.69914 5.76313 6.22039 6.39769 6.59065 7.05313 7.29553 7.47016 8.23718 8.47279 9.41916 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021584 B = 0.002494 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.928693 B =11225.587278 C =11838.111123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.066 3.934 4 C -0.116 4.116 5 C -0.121 4.121 6 C 0.086 3.914 7 C -0.081 4.081 8 C 0.515 3.485 9 O -0.578 6.578 10 N -0.601 5.601 11 C 0.119 3.881 12 C -0.130 4.130 13 C 0.187 3.813 14 C -0.144 4.144 15 N -0.723 5.723 16 C -0.208 4.208 17 H 0.079 0.921 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.958 3.042 21 H -0.276 1.276 22 H -0.307 1.307 23 H -0.285 1.285 24 C -0.118 4.118 25 C 0.122 3.878 26 N -0.456 5.456 27 C 0.008 3.992 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.370 0.630 43 H 0.244 0.756 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.753 -18.300 12.095 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.019 3.981 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.053 4.053 7 C -0.121 4.121 8 C 0.304 3.696 9 O -0.458 6.458 10 N -0.334 5.334 11 C -0.003 4.003 12 C -0.170 4.170 13 C 0.098 3.902 14 C -0.203 4.203 15 N -0.364 5.364 16 C -0.340 4.340 17 H 0.097 0.903 18 C -0.270 4.270 19 N -0.624 5.624 20 Si 0.790 3.210 21 H -0.202 1.202 22 H -0.234 1.234 23 H -0.212 1.212 24 C -0.157 4.157 25 C -0.001 4.001 26 N -0.165 5.165 27 C -0.151 4.151 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.086 0.914 31 H 0.182 0.818 32 H 0.191 0.809 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.203 0.797 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.507 -17.929 11.829 24.368 hybrid contribution 1.200 0.211 -0.679 1.395 sum -10.307 -17.718 11.150 23.334 Atomic orbital electron populations 1.23396 0.76255 1.06001 1.02260 1.86047 1.23549 1.25584 1.88481 1.20233 0.93880 0.85878 0.98135 1.21230 0.91703 0.99611 1.01636 1.22139 1.02732 0.90930 0.98252 1.20780 0.89237 0.95430 0.99838 1.20656 1.02434 0.90840 0.98177 1.20882 0.80860 0.81344 0.86543 1.90658 1.35524 1.70220 1.49400 1.48131 1.43496 1.12916 1.28839 1.21631 0.90837 0.94686 0.93114 1.22158 1.01109 0.95634 0.98130 1.19851 0.86552 0.93109 0.90721 1.22140 1.00092 0.97863 1.00239 1.42672 1.12518 1.70094 1.11077 1.19392 0.91917 1.27180 0.95511 0.90329 1.25360 1.01140 1.04133 0.96361 1.69805 1.30436 1.55003 1.07156 0.85423 0.80139 0.78722 0.76751 1.20229 1.23384 1.21190 1.21975 0.98052 0.95190 1.00448 1.21314 0.98352 0.91871 0.88549 1.67243 1.12694 1.27487 1.09081 1.23105 1.01277 0.86975 1.03716 0.92211 0.85621 0.91443 0.81761 0.80949 0.85341 0.84543 0.87361 0.92574 0.91164 0.90786 0.91576 0.93763 0.94372 0.79724 0.94671 0.91196 0.90234 0.93244 0.90713 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 113.37 1.11 1.27 16 2 O -0.32 -5.93 10.51 -92.55 -0.97 -6.90 16 3 C 0.07 1.41 6.71 22.60 0.15 1.56 16 4 C -0.12 -2.18 10.13 22.56 0.23 -1.96 16 5 C -0.12 -2.32 9.70 22.35 0.22 -2.10 16 6 C 0.09 2.13 5.76 42.56 0.25 2.38 16 7 C -0.08 -1.81 4.45 29.10 0.13 -1.68 16 8 C 0.51 16.27 7.63 87.66 0.67 16.94 16 9 O -0.58 -22.92 14.74 -3.04 -0.04 -22.96 16 10 N -0.60 -19.02 2.98 -819.81 -2.44 -21.46 16 11 C 0.12 3.48 6.06 86.22 0.52 4.01 16 12 C -0.13 -3.91 4.69 30.53 0.14 -3.77 16 13 C 0.19 6.55 0.74 3.63 0.00 6.55 16 14 C -0.14 -4.76 8.44 71.98 0.61 -4.15 16 15 N -0.72 -32.61 4.14 -303.22 -1.25 -33.86 16 16 C -0.21 -10.37 8.68 84.03 0.73 -9.65 16 17 H 0.08 3.74 6.70 -2.91 -0.02 3.72 16 18 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 19 N -0.97 -57.47 13.06 21.65 0.28 -57.19 16 20 Si 0.96 44.39 29.55 68.60 2.03 46.42 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.31 -14.80 7.11 99.48 0.71 -14.09 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 C -0.12 -3.79 4.96 30.66 0.15 -3.64 16 25 C 0.12 4.25 6.16 86.35 0.53 4.79 16 26 N -0.46 -13.11 9.21 -183.49 -1.69 -14.80 16 27 C 0.01 0.19 10.22 84.80 0.87 1.05 16 28 H 0.06 0.63 7.69 -2.39 -0.02 0.61 16 29 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.59 7.67 -2.39 -0.02 0.57 16 31 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.17 2.09 7.95 -2.91 -0.02 2.07 16 33 H 0.13 2.33 7.68 -2.39 -0.02 2.31 16 34 H 0.14 2.20 7.68 -2.39 -0.02 2.18 16 35 H 0.11 2.27 5.94 -2.39 -0.01 2.25 16 36 H 0.06 2.05 7.74 -2.39 -0.02 2.04 16 37 H 0.07 2.20 7.31 -2.39 -0.02 2.19 16 38 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.55 7.27 -2.39 -0.02 1.53 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.37 18.72 6.46 -92.72 -0.60 18.12 16 43 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 46 H 0.05 1.96 6.94 -2.39 -0.02 1.95 16 47 H 0.07 2.68 7.00 -2.39 -0.02 2.67 16 48 H 0.17 3.21 6.32 -2.91 -0.02 3.19 16 Total: -1.00 -72.36 380.72 3.06 -69.31 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.38 Total: 33.62 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.78 Total: 7.82 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -5.10 Total: -127.31 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -1.02 Total: -29.86 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.36 3.06 -69.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700282597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.968 kcal (2) G-P(sol) polarization free energy of solvation -72.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds