Wall clock time and date at job start Tue Mar 31 2020 17:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38096 * 119.58136 * 2 1 4 4 C 1.38781 * 119.28189 * 180.29897 * 3 2 1 5 5 C 1.50703 * 120.75195 * 180.02562 * 4 3 2 6 6 C 1.38420 * 118.48943 * 359.97438 * 4 3 2 7 7 C 1.50701 * 120.44156 * 179.97438 * 6 4 3 8 8 C 1.50707 * 109.46884 * 270.02176 * 7 6 4 9 9 O 1.21277 * 119.99921 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99965 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99988 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47039 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.85175 * 316.19036 * 12 11 10 14 14 C 1.53787 * 113.61850 * 87.50035 * 12 11 10 15 15 C 1.53779 * 87.08188 * 139.97574 * 14 12 11 16 16 H 1.09005 * 113.60652 * 89.12053 * 15 14 12 17 17 N 1.46499 * 113.69229 * 220.00661 * 15 14 12 18 18 C 1.36935 * 120.00118 * 252.53801 * 17 15 14 19 19 H 1.08004 * 120.00168 * 0.02562 * 18 17 15 20 20 C 1.38819 * 120.00140 * 180.02562 * 18 17 15 21 21 N 1.31611 * 119.99937 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99719 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46944 * 89.99886 * 22 20 18 24 24 H 1.48497 * 109.46991 * 210.00076 * 22 20 18 25 25 H 1.48500 * 109.47062 * 329.99993 * 22 20 18 26 26 C 1.53779 * 87.08503 * 334.57124 * 15 14 12 27 27 C 1.38870 * 119.11274 * 359.97438 * 6 4 3 28 28 O 1.35681 * 119.68267 * 179.97438 * 27 6 4 29 29 N 1.31934 * 119.58357 * 180.28162 * 2 1 3 30 30 H 1.09004 * 109.47216 * 269.72138 * 1 2 3 31 31 H 1.08997 * 109.47500 * 29.71965 * 1 2 3 32 32 H 1.09000 * 109.47148 * 149.72198 * 1 2 3 33 33 H 1.07998 * 120.35439 * 0.28142 * 3 2 1 34 34 H 1.08999 * 109.47003 * 269.97964 * 5 4 3 35 35 H 1.08995 * 109.47740 * 29.97569 * 5 4 3 36 36 H 1.09008 * 109.47001 * 149.98158 * 5 4 3 37 37 H 1.09001 * 109.47621 * 30.01960 * 7 6 4 38 38 H 1.08999 * 109.47422 * 150.02468 * 7 6 4 39 39 H 0.97000 * 120.00265 * 359.97438 * 10 8 7 40 40 H 1.09006 * 109.46796 * 299.99353 * 11 10 8 41 41 H 1.08995 * 109.47540 * 59.99321 * 11 10 8 42 42 H 1.08990 * 113.61506 * 254.53289 * 14 12 11 43 43 H 1.09005 * 113.60843 * 25.42928 * 14 12 11 44 44 H 0.97000 * 119.99946 * 72.54339 * 17 15 14 45 45 H 0.97002 * 120.00191 * 180.02562 * 21 20 18 46 46 H 1.08998 * 113.61345 * 270.88238 * 26 15 14 47 47 H 1.08998 * 113.61412 * 139.97925 * 26 15 14 48 48 H 0.96693 * 114.00647 * 270.02469 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2010 0.0000 4 6 3.5765 1.1937 -0.0063 5 6 4.3538 2.4848 -0.0059 6 6 4.2304 -0.0263 -0.0119 7 6 5.7362 -0.0855 -0.0194 8 6 6.2311 -0.1020 -1.4428 9 8 5.4390 -0.0693 -2.3606 10 7 7.5539 -0.1540 -1.6958 11 6 8.0350 -0.1694 -3.0794 12 6 9.5638 -0.2296 -3.0871 13 1 10.0177 0.4465 -2.3627 14 6 10.1243 -1.6607 -3.0324 15 6 11.1843 -1.2001 -4.0468 16 1 12.0823 -0.7904 -3.5841 17 7 11.4804 -2.1944 -5.0812 18 6 12.6694 -2.8733 -5.0580 19 1 13.3887 -2.6761 -4.2769 20 6 12.9501 -3.8151 -6.0385 21 7 14.0927 -4.4680 -6.0159 22 14 11.7063 -4.1556 -7.3898 23 1 11.9619 -3.2490 -8.5378 24 1 11.8333 -5.5665 -7.8354 25 1 10.3348 -3.9221 -6.8705 26 6 10.1772 -0.1274 -4.4936 27 6 3.4802 -1.1949 -0.0104 28 8 4.1092 -2.3971 -0.0164 29 7 2.1583 -1.1473 -0.0056 30 1 -0.3634 -0.0050 1.0277 31 1 -0.3634 0.8924 -0.5094 32 1 -0.3633 -0.8875 -0.5181 33 1 1.6477 2.1356 0.0046 34 1 4.5369 2.7990 -1.0335 35 1 3.7811 3.2537 0.5124 36 1 5.3059 2.3355 0.5035 37 1 6.1368 0.7884 0.4944 38 1 6.0669 -0.9902 0.4906 39 1 8.1874 -0.1804 -0.9617 40 1 7.6341 -1.0429 -3.5938 41 1 7.7048 0.7357 -3.5891 42 1 10.5378 -1.9307 -2.0608 43 1 9.4406 -2.4127 -3.4263 44 1 10.8342 -2.3717 -5.7825 45 1 14.2890 -5.1258 -6.7012 46 1 9.5081 -0.4602 -5.2870 47 1 10.6336 0.8403 -4.7016 48 1 4.2872 -2.7436 -0.9014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707069409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:11 Heat of formation + Delta-G solvation = -19.205315 kcal Electronic energy + Delta-G solvation = -27795.488560 eV Core-core repulsion = 23851.346594 eV Total energy + Delta-G solvation = -3944.141966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.21501 -39.77830 -38.60920 -37.53435 -35.22615 -34.77810 -33.38011 -32.26608 -31.01909 -30.53759 -28.22256 -27.75165 -25.88917 -25.24918 -23.69467 -23.00889 -21.50353 -21.04324 -20.50617 -19.34399 -18.61567 -17.63712 -17.47534 -17.21556 -16.55989 -15.87331 -15.62328 -15.38332 -14.90005 -14.69969 -14.50341 -14.18958 -13.89599 -13.79850 -13.70024 -13.45438 -13.29272 -13.16382 -12.70525 -12.65552 -12.32665 -12.24269 -12.14660 -12.03096 -11.91251 -11.82465 -11.66866 -11.61443 -10.92597 -10.53843 -10.42985 -10.19499 -10.05634 -9.86831 -9.73386 -9.68774 -9.57561 -9.17655 -8.94257 -8.92447 -7.30473 -5.81403 -3.17096 0.66090 0.88290 2.42628 2.93301 3.17891 3.35185 3.38172 3.43315 3.52832 4.07456 4.23037 4.45999 4.47651 4.55399 4.60556 4.78216 4.81101 4.85070 4.92973 4.99875 5.02805 5.06263 5.16356 5.23819 5.28243 5.33505 5.36192 5.37853 5.46699 5.59635 5.67012 5.69207 5.72165 5.75891 5.79319 5.92580 6.11564 6.12596 6.17868 6.22591 6.30877 6.45358 6.63189 6.93126 7.19625 7.31504 7.66588 7.94697 8.02288 8.38312 9.16025 9.88807 10.08417 11.36731 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.001998 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.638736 B =14010.065821 C =14589.307612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.151 3.849 3 C -0.184 4.184 4 C -0.012 4.012 5 C -0.120 4.120 6 C -0.137 4.137 7 C -0.100 4.100 8 C 0.513 3.487 9 O -0.540 6.540 10 N -0.724 5.724 11 C 0.132 3.868 12 C -0.127 4.127 13 H 0.091 0.909 14 C -0.161 4.161 15 C 0.172 3.828 16 H 0.084 0.916 17 N -0.737 5.737 18 C -0.249 4.249 19 H 0.091 0.909 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.277 1.277 26 C -0.146 4.146 27 C 0.334 3.666 28 O -0.482 6.482 29 N -0.507 5.507 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.402 0.598 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.883 15.812 15.912 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.014 3.986 3 C -0.204 4.204 4 C -0.020 4.020 5 C -0.177 4.177 6 C -0.141 4.141 7 C -0.140 4.140 8 C 0.299 3.701 9 O -0.417 6.417 10 N -0.375 5.375 11 C 0.009 3.991 12 C -0.146 4.146 13 H 0.109 0.891 14 C -0.202 4.202 15 C 0.060 3.940 16 H 0.102 0.898 17 N -0.376 5.376 18 C -0.379 4.379 19 H 0.109 0.891 20 C -0.191 4.191 21 N -0.580 5.580 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.185 4.185 27 C 0.154 3.846 28 O -0.290 6.290 29 N -0.227 5.227 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.236 0.764 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -24.614 14.954 15.851 32.874 hybrid contribution 0.049 0.151 -1.150 1.161 sum -24.565 15.105 14.700 32.368 Atomic orbital electron populations 1.20743 0.88506 1.03687 1.03213 1.20985 0.96750 0.87185 0.93664 1.21778 0.93870 0.99377 1.05393 1.20037 0.93748 0.94795 0.93380 1.20901 0.99896 0.93462 1.03397 1.20060 0.95376 0.92860 1.05755 1.20563 0.92067 1.06025 0.95387 1.20470 0.82432 0.76290 0.90921 1.90725 1.54953 1.49358 1.46640 1.46055 1.06832 1.75008 1.09646 1.21431 0.93842 1.02002 0.81831 1.22640 0.92640 0.99808 0.99502 0.89060 1.23917 1.00599 0.94299 1.01353 1.21505 0.94066 0.88823 0.89588 0.89789 1.42758 1.19629 1.45292 1.29967 1.19134 0.93405 1.15161 1.10210 0.89135 1.24700 0.96833 0.98824 0.98750 1.69698 1.23019 1.28953 1.36285 0.86555 0.81447 0.77568 0.82983 1.21019 1.21680 1.20311 1.23471 0.99322 1.00587 0.95163 1.18822 0.86599 0.84912 0.94221 1.84684 1.76493 1.33560 1.34271 1.66987 1.09509 1.30733 1.15481 0.90235 0.90455 0.90310 0.84473 0.89987 0.90684 0.90798 0.87535 0.86981 0.76412 0.91364 0.91774 0.92252 0.90483 0.80454 0.93007 0.90374 0.91612 0.73793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.17 36.01 0.37 -0.31 16 2 C 0.15 1.50 6.78 -82.60 -0.56 0.94 16 3 C -0.18 -1.57 9.44 -39.43 -0.37 -1.94 16 4 C -0.01 -0.11 5.91 -104.35 -0.62 -0.73 16 5 C -0.12 -0.74 9.67 36.01 0.35 -0.39 16 6 C -0.14 -1.40 4.40 -104.32 -0.46 -1.86 16 7 C -0.10 -0.80 5.25 -29.03 -0.15 -0.95 16 8 C 0.51 5.45 7.82 -10.98 -0.09 5.36 16 9 O -0.54 -7.94 16.03 5.56 0.09 -7.85 16 10 N -0.72 -6.75 5.56 -60.29 -0.33 -7.09 16 11 C 0.13 1.50 5.51 -4.04 -0.02 1.48 16 12 C -0.13 -1.47 3.75 -89.80 -0.34 -1.81 16 13 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 14 C -0.16 -2.40 7.43 -25.92 -0.19 -2.59 16 15 C 0.17 3.06 4.48 -67.12 -0.30 2.76 16 16 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 17 N -0.74 -16.95 5.21 -52.64 -0.27 -17.22 16 18 C -0.25 -6.91 10.45 -15.06 -0.16 -7.06 16 19 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 20 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 21 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16 22 Si 0.88 21.98 27.74 -169.99 -4.71 17.27 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 26 C -0.15 -2.06 7.39 -25.92 -0.19 -2.25 16 27 C 0.33 3.99 7.72 -17.13 -0.13 3.85 16 28 O -0.48 -5.30 12.62 -18.75 -0.24 -5.53 16 29 N -0.51 -6.31 10.30 -9.55 -0.10 -6.41 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 36 H 0.07 0.37 6.08 -51.92 -0.32 0.05 16 37 H 0.11 0.57 6.07 -51.93 -0.32 0.26 16 38 H 0.11 0.80 7.55 -51.93 -0.39 0.41 16 39 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 40 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 44 H 0.36 8.26 5.78 -40.82 -0.24 8.02 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 46 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.40 3.30 9.06 45.56 0.41 3.71 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -36.06 396.38 -8.45 -44.51 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.66 Total: 10.06 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.96 Total: -5.45 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.07 Total: -58.97 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.15 Total: -13.39 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.06 -8.45 -44.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707069409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.303 kcal (2) G-P(sol) polarization free energy of solvation -36.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds