Wall clock time and date at job start Tue Mar 31 2020 17:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38096 * 119.58136 * 2 1 4 4 C 1.38781 * 119.28189 * 180.29897 * 3 2 1 5 5 C 1.50703 * 120.75195 * 180.02562 * 4 3 2 6 6 C 1.38420 * 118.48943 * 359.97438 * 4 3 2 7 7 C 1.50701 * 120.44156 * 179.97438 * 6 4 3 8 8 C 1.50707 * 109.46884 * 270.02176 * 7 6 4 9 9 O 1.21277 * 119.99921 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99965 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99988 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47039 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.85175 * 316.19036 * 12 11 10 14 14 C 1.53787 * 113.61850 * 87.50035 * 12 11 10 15 15 C 1.53779 * 87.08188 * 139.97574 * 14 12 11 16 16 H 1.09005 * 113.60652 * 89.12053 * 15 14 12 17 17 N 1.46499 * 113.69229 * 220.00661 * 15 14 12 18 18 C 1.36935 * 120.00118 * 252.53801 * 17 15 14 19 19 H 1.08004 * 120.00168 * 0.02562 * 18 17 15 20 20 C 1.38819 * 120.00140 * 180.02562 * 18 17 15 21 21 N 1.31611 * 119.99937 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99719 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46944 * 89.99886 * 22 20 18 24 24 H 1.48497 * 109.46991 * 210.00076 * 22 20 18 25 25 H 1.48500 * 109.47062 * 329.99993 * 22 20 18 26 26 C 1.53779 * 87.08503 * 334.57124 * 15 14 12 27 27 C 1.38870 * 119.11274 * 359.97438 * 6 4 3 28 28 O 1.35681 * 119.68267 * 179.97438 * 27 6 4 29 29 N 1.31934 * 119.58357 * 180.28162 * 2 1 3 30 30 H 1.09004 * 109.47216 * 269.72138 * 1 2 3 31 31 H 1.08997 * 109.47500 * 29.71965 * 1 2 3 32 32 H 1.09000 * 109.47148 * 149.72198 * 1 2 3 33 33 H 1.07998 * 120.35439 * 0.28142 * 3 2 1 34 34 H 1.08999 * 109.47003 * 269.97964 * 5 4 3 35 35 H 1.08995 * 109.47740 * 29.97569 * 5 4 3 36 36 H 1.09008 * 109.47001 * 149.98158 * 5 4 3 37 37 H 1.09001 * 109.47621 * 30.01960 * 7 6 4 38 38 H 1.08999 * 109.47422 * 150.02468 * 7 6 4 39 39 H 0.97000 * 120.00265 * 359.97438 * 10 8 7 40 40 H 1.09006 * 109.46796 * 299.99353 * 11 10 8 41 41 H 1.08995 * 109.47540 * 59.99321 * 11 10 8 42 42 H 1.08990 * 113.61506 * 254.53289 * 14 12 11 43 43 H 1.09005 * 113.60843 * 25.42928 * 14 12 11 44 44 H 0.97000 * 119.99946 * 72.54339 * 17 15 14 45 45 H 0.97002 * 120.00191 * 180.02562 * 21 20 18 46 46 H 1.08998 * 113.61345 * 270.88238 * 26 15 14 47 47 H 1.08998 * 113.61412 * 139.97925 * 26 15 14 48 48 H 0.96693 * 114.00647 * 270.02469 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2010 0.0000 4 6 3.5765 1.1937 -0.0063 5 6 4.3538 2.4848 -0.0059 6 6 4.2304 -0.0263 -0.0119 7 6 5.7362 -0.0855 -0.0194 8 6 6.2311 -0.1020 -1.4428 9 8 5.4390 -0.0693 -2.3606 10 7 7.5539 -0.1540 -1.6958 11 6 8.0350 -0.1694 -3.0794 12 6 9.5638 -0.2296 -3.0871 13 1 10.0177 0.4465 -2.3627 14 6 10.1243 -1.6607 -3.0324 15 6 11.1843 -1.2001 -4.0468 16 1 12.0823 -0.7904 -3.5841 17 7 11.4804 -2.1944 -5.0812 18 6 12.6694 -2.8733 -5.0580 19 1 13.3887 -2.6761 -4.2769 20 6 12.9501 -3.8151 -6.0385 21 7 14.0927 -4.4680 -6.0159 22 14 11.7063 -4.1556 -7.3898 23 1 11.9619 -3.2490 -8.5378 24 1 11.8333 -5.5665 -7.8354 25 1 10.3348 -3.9221 -6.8705 26 6 10.1772 -0.1274 -4.4936 27 6 3.4802 -1.1949 -0.0104 28 8 4.1092 -2.3971 -0.0164 29 7 2.1583 -1.1473 -0.0056 30 1 -0.3634 -0.0050 1.0277 31 1 -0.3634 0.8924 -0.5094 32 1 -0.3633 -0.8875 -0.5181 33 1 1.6477 2.1356 0.0046 34 1 4.5369 2.7990 -1.0335 35 1 3.7811 3.2537 0.5124 36 1 5.3059 2.3355 0.5035 37 1 6.1368 0.7884 0.4944 38 1 6.0669 -0.9902 0.4906 39 1 8.1874 -0.1804 -0.9617 40 1 7.6341 -1.0429 -3.5938 41 1 7.7048 0.7357 -3.5891 42 1 10.5378 -1.9307 -2.0608 43 1 9.4406 -2.4127 -3.4263 44 1 10.8342 -2.3717 -5.7825 45 1 14.2890 -5.1258 -6.7012 46 1 9.5081 -0.4602 -5.2870 47 1 10.6336 0.8403 -4.7016 48 1 4.2872 -2.7436 -0.9014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707069409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:09 Heat of formation + Delta-G solvation = -48.230621 kcal Electronic energy + Delta-G solvation = -27796.747191 eV Core-core repulsion = 23851.346594 eV Total energy + Delta-G solvation = -3945.400598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.92412 -40.70608 -39.76984 -38.27807 -36.17729 -35.74495 -35.00418 -32.97643 -32.74260 -31.39368 -29.00974 -28.53652 -26.72034 -26.46216 -25.40283 -23.76553 -22.48962 -22.09801 -21.40313 -20.66337 -19.38600 -19.33617 -18.33812 -18.03201 -17.45403 -16.71755 -16.63797 -16.44299 -16.07121 -16.01278 -15.60981 -15.16406 -14.83054 -14.64966 -14.57693 -14.43938 -14.10940 -13.96061 -13.85225 -13.79192 -13.25331 -13.23605 -13.18242 -13.04263 -12.87356 -12.78996 -12.68941 -12.50827 -12.43883 -12.14058 -11.90550 -11.69470 -11.60206 -11.14666 -10.97352 -10.85797 -10.44615 -10.37831 -10.05386 -9.62899 -9.26597 -8.03315 -5.35359 -0.03763 0.20249 1.36657 1.39047 1.46246 1.62450 2.17306 2.46738 2.47065 2.83527 3.27171 3.44866 3.60147 3.67962 3.70542 3.79205 3.82657 3.88963 4.02897 4.10495 4.24531 4.29618 4.37291 4.39984 4.46216 4.56606 4.57647 4.68260 4.72975 4.77657 4.79183 4.82698 4.95916 4.98434 5.00303 5.04870 5.10754 5.22680 5.23428 5.32337 5.34592 5.46057 5.63935 5.67297 5.78084 6.22765 6.47119 6.58225 6.95533 7.07758 7.26049 7.86512 8.03621 9.18168 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021101 B = 0.001998 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.638736 B =14010.065821 C =14589.307612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.132 3.868 3 C -0.185 4.185 4 C -0.021 4.021 5 C -0.118 4.118 6 C -0.149 4.149 7 C -0.091 4.091 8 C 0.516 3.484 9 O -0.584 6.584 10 N -0.712 5.712 11 C 0.139 3.861 12 C -0.095 4.095 13 H 0.122 0.878 14 C -0.155 4.155 15 C 0.144 3.856 16 H 0.079 0.921 17 N -0.745 5.745 18 C -0.230 4.230 19 H 0.060 0.940 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.953 3.047 23 H -0.278 1.278 24 H -0.298 1.298 25 H -0.255 1.255 26 C -0.137 4.137 27 C 0.305 3.695 28 O -0.492 6.492 29 N -0.544 5.544 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.168 0.832 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.417 0.583 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.364 0.636 45 H 0.257 0.743 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.708 18.599 16.957 35.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.005 4.005 3 C -0.204 4.204 4 C -0.028 4.028 5 C -0.174 4.174 6 C -0.152 4.152 7 C -0.131 4.131 8 C 0.303 3.697 9 O -0.464 6.464 10 N -0.364 5.364 11 C 0.015 3.985 12 C -0.114 4.114 13 H 0.140 0.860 14 C -0.196 4.196 15 C 0.035 3.965 16 H 0.097 0.903 17 N -0.386 5.386 18 C -0.362 4.362 19 H 0.078 0.922 20 C -0.258 4.258 21 N -0.634 5.634 22 Si 0.781 3.219 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.180 1.180 26 C -0.176 4.176 27 C 0.127 3.873 28 O -0.301 6.301 29 N -0.264 5.264 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.186 0.814 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.157 0.843 38 H 0.139 0.861 39 H 0.254 0.746 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.197 0.803 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -26.460 17.793 16.955 36.114 hybrid contribution 0.618 -0.643 -1.375 1.639 sum -25.843 17.150 15.580 34.709 Atomic orbital electron populations 1.20827 0.86549 1.04343 1.04152 1.21594 0.98258 0.87188 0.93414 1.22169 0.94098 1.00088 1.04052 1.20495 0.94358 0.95566 0.92414 1.20969 1.00572 0.92413 1.03440 1.20292 0.96443 0.92764 1.05749 1.20577 0.90850 1.07917 0.93762 1.20860 0.82216 0.75119 0.91482 1.90714 1.56089 1.51440 1.48154 1.45909 1.06912 1.74270 1.09359 1.21213 0.93280 1.01205 0.82830 1.22468 0.92791 0.97658 0.98499 0.85979 1.23736 0.99211 0.96184 1.00422 1.21963 0.95377 0.89428 0.89743 0.90318 1.42804 1.18076 1.46166 1.31511 1.19139 0.94188 1.14384 1.08453 0.92182 1.25501 0.98998 0.99463 1.01837 1.69875 1.25505 1.30414 1.37636 0.85438 0.79914 0.76768 0.79814 1.20424 1.22475 1.17989 1.23360 0.97937 0.99736 0.96580 1.19159 0.86972 0.85579 0.95638 1.84647 1.76537 1.33877 1.35018 1.66972 1.10176 1.32406 1.16881 0.89037 0.88090 0.91342 0.81446 0.90589 0.88584 0.89363 0.84331 0.86125 0.74571 0.93462 0.91542 0.91522 0.91961 0.80258 0.93441 0.90730 0.89914 0.73126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.17 71.24 0.72 -0.47 16 2 C 0.13 2.52 6.78 42.51 0.29 2.81 16 3 C -0.18 -2.79 9.44 22.37 0.21 -2.58 16 4 C -0.02 -0.33 5.91 -19.69 -0.12 -0.45 16 5 C -0.12 -1.07 9.67 71.24 0.69 -0.38 16 6 C -0.15 -2.86 4.40 -19.67 -0.09 -2.95 16 7 C -0.09 -1.25 5.25 29.10 0.15 -1.10 16 8 C 0.52 9.90 7.82 87.66 0.69 10.59 16 9 O -0.58 -16.63 16.03 -3.02 -0.05 -16.68 16 10 N -0.71 -11.19 5.56 -463.06 -2.57 -13.77 16 11 C 0.14 2.79 5.51 86.38 0.48 3.26 16 12 C -0.10 -1.89 3.75 -10.27 -0.04 -1.93 16 13 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.16 -4.33 7.43 31.12 0.23 -4.10 16 15 C 0.14 4.93 4.48 45.52 0.20 5.13 16 16 H 0.08 2.77 8.10 -2.38 -0.02 2.75 16 17 N -0.74 -33.82 5.21 -320.44 -1.67 -35.49 16 18 C -0.23 -12.97 10.45 84.04 0.88 -12.09 16 19 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 21 N -0.98 -63.09 13.97 21.65 0.30 -62.79 16 22 Si 0.95 45.82 27.74 68.60 1.90 47.73 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 25 H -0.26 -11.17 6.52 99.48 0.65 -10.52 16 26 C -0.14 -3.49 7.39 31.12 0.23 -3.26 16 27 C 0.30 7.34 7.72 84.78 0.65 7.99 16 28 O -0.49 -11.09 12.62 -89.99 -1.14 -12.23 16 29 N -0.54 -13.75 10.30 -296.98 -3.06 -16.81 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.67 8.07 -2.39 -0.02 0.65 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.47 8.10 -2.39 -0.02 0.45 16 36 H 0.09 0.52 6.08 -2.38 -0.01 0.51 16 37 H 0.14 0.95 6.07 -2.39 -0.01 0.94 16 38 H 0.12 1.47 7.55 -2.39 -0.02 1.45 16 39 H 0.42 4.05 8.47 -92.71 -0.79 3.26 16 40 H 0.05 1.18 7.85 -2.38 -0.02 1.16 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.06 1.95 7.90 -2.38 -0.02 1.93 16 44 H 0.36 16.11 5.78 -92.71 -0.54 15.58 16 45 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.07 2.00 8.08 -2.39 -0.02 1.98 16 47 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.41 7.16 9.06 -74.06 -0.67 6.48 16 Total: -1.00 -81.73 396.38 -1.68 -83.41 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -1.05 Total: 29.62 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.65 Total: -2.99 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -7.00 Total: -128.85 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -1.18 Total: -28.91 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.73 kcal Total: -81.73 -1.68 -83.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707069409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.176 kcal (2) G-P(sol) polarization free energy of solvation -81.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds