Wall clock time and date at job start Tue Mar 31 2020 17:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.45968 * 2 1 4 4 N 1.46504 * 109.47056 * 60.02640 * 3 2 1 5 5 C 1.34771 * 119.99693 * 180.02562 * 4 3 2 6 6 O 1.21689 * 120.00187 * 359.72418 * 5 4 3 7 7 C 1.46721 * 119.99674 * 180.02562 * 5 4 3 8 8 C 1.36340 * 126.64603 * 359.74353 * 7 5 4 9 9 N 1.33695 * 107.45448 * 179.97438 * 8 7 5 10 10 C 1.30619 * 108.99519 * 0.02562 * 9 8 7 11 11 C 1.50695 * 125.42317 * 180.02562 * 10 9 8 12 12 C 1.53004 * 117.49641 * 8.72168 * 11 10 9 13 13 C 1.53006 * 117.50035 * 300.06395 * 11 10 9 14 14 O 1.33665 * 109.15151 * 359.75273 * 10 9 8 15 15 C 1.53040 * 109.45005 * 119.96699 * 2 1 3 16 16 C 1.53193 * 109.31178 * 58.64706 * 15 2 1 17 17 N 1.46928 * 108.77617 * 54.63792 * 16 15 2 18 18 C 1.36929 * 120.62925 * 126.40968 * 17 16 15 19 19 H 1.08004 * 119.99948 * 207.66124 * 18 17 16 20 20 C 1.38809 * 120.00144 * 27.66718 * 18 17 16 21 21 N 1.31618 * 120.00312 * 17.36578 * 20 18 17 22 22 Si 1.86805 * 119.99931 * 197.36509 * 20 18 17 23 23 H 1.48497 * 109.47252 * 89.99789 * 22 20 18 24 24 H 1.48502 * 109.47234 * 209.99695 * 22 20 18 25 25 H 1.48500 * 109.47093 * 329.99618 * 22 20 18 26 26 C 1.46925 * 118.73725 * 306.38956 * 17 16 15 27 27 C 1.53042 * 109.45925 * 240.02833 * 2 1 3 28 28 H 1.08999 * 109.47589 * 60.00122 * 1 2 3 29 29 H 1.09004 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47501 * 299.99698 * 1 2 3 31 31 H 1.09001 * 109.47049 * 300.02544 * 3 2 1 32 32 H 1.08997 * 109.47063 * 180.02562 * 3 2 1 33 33 H 0.97003 * 119.99787 * 359.97438 * 4 3 2 34 34 H 1.08004 * 126.27095 * 359.96562 * 8 7 5 35 35 H 1.09002 * 115.55247 * 154.39039 * 11 10 9 36 36 H 1.09000 * 117.50104 * 0.02562 * 12 11 10 37 37 H 1.09010 * 117.49637 * 145.02309 * 12 11 10 38 38 H 1.08993 * 117.49948 * 214.97663 * 13 11 10 39 39 H 1.09003 * 117.49613 * 359.97438 * 13 11 10 40 40 H 1.08992 * 109.49932 * 178.59974 * 15 2 1 41 41 H 1.09006 * 109.49636 * 298.69663 * 15 2 1 42 42 H 1.08997 * 109.58870 * 294.84547 * 16 15 2 43 43 H 1.08998 * 109.58410 * 174.42192 * 16 15 2 44 44 H 0.96994 * 119.99986 * 180.02562 * 21 20 18 45 45 H 1.09009 * 109.58597 * 293.82314 * 26 17 16 46 46 H 1.09001 * 109.70454 * 173.46713 * 26 17 16 47 47 H 1.09005 * 109.49994 * 61.30894 * 27 2 1 48 48 H 1.08996 * 109.49635 * 181.40587 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5517 2.1329 1.1965 5 6 1.8767 3.4234 1.4095 6 8 2.5796 4.0137 0.6106 7 6 1.3885 4.1146 2.6081 8 6 0.5990 3.5874 3.5867 9 7 0.3877 4.5479 4.4924 10 6 1.0084 5.6331 4.1140 11 6 1.0178 6.9404 4.8634 12 6 0.4137 6.9531 6.2691 13 6 -0.3291 7.6229 5.1103 14 8 1.6388 5.3975 2.9591 15 6 2.0396 -0.7208 1.2501 16 6 1.4990 -2.1541 1.2643 17 7 1.8620 -2.8090 0.0001 18 6 2.5253 -4.0069 0.0003 19 1 3.1670 -4.2689 -0.8280 20 6 2.3730 -4.8845 1.0649 21 7 1.3597 -4.7447 1.8932 22 14 3.6061 -6.2639 1.3220 23 1 4.7077 -5.7866 2.1958 24 1 2.9296 -7.4192 1.9648 25 1 4.1611 -6.6827 0.0098 26 6 1.4993 -2.1542 -1.2642 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6759 1.9565 -0.8898 32 1 3.1297 1.4428 -0.0005 33 1 0.9941 1.6614 1.8350 34 1 0.2145 2.5788 3.6234 35 1 1.8806 7.5809 4.6806 36 1 0.0098 6.0158 6.6519 37 1 0.8788 7.6025 7.0109 38 1 -0.3524 8.7124 5.0902 39 1 -1.2220 7.1265 4.7302 40 1 3.1292 -0.7431 1.2385 41 1 1.6955 -0.1934 2.1399 42 1 0.4141 -2.1345 1.3673 43 1 1.9375 -2.7017 2.0985 44 1 1.2535 -5.3578 2.6373 45 1 0.4143 -2.1346 -1.3674 46 1 1.9359 -2.7012 -2.0998 47 1 1.6959 -0.1935 -2.1399 48 1 3.1295 -0.7431 -1.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716885286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:03 Heat of formation + Delta-G solvation = 33.998647 kcal Electronic energy + Delta-G solvation = -28651.684962 eV Core-core repulsion = 24709.850093 eV Total energy + Delta-G solvation = -3941.834869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.72847 -39.97210 -38.48055 -37.73276 -35.42545 -34.92284 -33.31458 -31.28122 -30.42476 -29.97432 -27.21217 -26.97932 -25.13578 -23.93326 -23.60139 -22.88021 -22.38314 -21.19771 -20.85356 -20.64983 -18.67453 -18.00000 -17.37966 -17.09308 -16.43891 -16.15577 -15.33314 -15.19733 -15.07884 -14.91280 -14.63297 -14.09040 -14.04662 -13.54401 -13.49266 -13.44138 -12.88828 -12.80305 -12.67970 -12.12931 -12.08080 -11.88982 -11.52917 -11.35999 -11.34798 -11.25120 -11.22458 -11.07132 -10.80886 -10.74947 -10.59873 -10.32172 -10.23969 -10.19476 -9.85087 -9.58559 -9.48130 -9.31390 -9.02487 -8.47334 -6.68979 -5.81644 -3.23128 0.52216 1.79898 2.02030 2.93065 3.15813 3.28363 3.36345 3.43804 3.44417 3.65065 4.18956 4.30055 4.40300 4.47769 4.50228 4.57284 4.91868 5.08227 5.09761 5.13968 5.15769 5.31395 5.35296 5.37779 5.47346 5.51738 5.64868 5.68271 5.75675 5.81149 5.84850 6.01303 6.01909 6.08079 6.22404 6.28146 6.42780 6.46805 6.54445 6.63491 6.72531 6.81801 6.95561 7.14511 7.30695 7.33433 7.62870 7.77831 7.90997 8.42584 9.19242 9.82707 10.38903 11.26780 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.002321 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.632311 B =12061.947695 C =12891.187958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C 0.132 3.868 4 N -0.701 5.701 5 C 0.598 3.402 6 O -0.526 6.526 7 C -0.095 4.095 8 C 0.027 3.973 9 N -0.483 5.483 10 C 0.243 3.757 11 C -0.088 4.088 12 C -0.143 4.143 13 C -0.152 4.152 14 O -0.166 6.166 15 C -0.131 4.131 16 C 0.171 3.829 17 N -0.591 5.591 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.146 3.854 27 C -0.120 4.120 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.404 0.596 34 H 0.196 0.804 35 H 0.137 0.863 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.022 0.978 43 H 0.086 0.914 44 H 0.253 0.747 45 H 0.021 0.979 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 21.883 5.168 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C 0.010 3.990 4 N -0.354 5.354 5 C 0.382 3.618 6 O -0.403 6.403 7 C -0.152 4.152 8 C -0.117 4.117 9 N -0.212 5.212 10 C 0.039 3.961 11 C -0.107 4.107 12 C -0.180 4.180 13 C -0.190 4.190 14 O -0.050 6.050 15 C -0.171 4.171 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.019 3.981 27 C -0.160 4.160 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.241 0.759 34 H 0.213 0.787 35 H 0.155 0.845 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.820 22.170 5.217 23.093 hybrid contribution 0.801 -0.987 -0.113 1.276 sum -3.019 21.183 5.104 21.997 Atomic orbital electron populations 1.21963 0.94557 1.03244 1.00316 1.20724 0.95893 0.91615 0.98236 1.21699 0.99430 0.92310 0.85610 1.45702 1.53211 1.09915 1.26604 1.16265 0.80723 0.82008 0.82818 1.90873 1.37295 1.66054 1.46099 1.22806 1.07316 0.83891 1.01146 1.23738 0.97669 1.00467 0.89809 1.70287 1.22986 0.99179 1.28745 1.25449 0.91026 0.96444 0.83221 1.20179 1.00870 0.90427 0.99260 1.23150 1.01595 1.03842 0.89461 1.23170 0.93611 1.00451 1.01788 1.84463 1.57591 1.27809 1.35133 1.22278 1.00829 0.99690 0.94261 1.20800 0.96546 0.87716 0.90447 1.44028 1.66794 1.21107 0.99443 1.19196 1.19247 0.93462 1.06146 0.91701 1.25017 0.97122 0.97555 0.99990 1.70022 1.27856 1.38932 1.17955 0.86305 0.81003 0.81560 0.77998 1.21492 1.21805 1.20459 1.20911 0.96440 0.90540 0.90167 1.22004 1.00869 0.98222 0.94870 0.93232 0.90501 0.93739 0.91267 0.91041 0.75894 0.78746 0.84510 0.86843 0.87223 0.87166 0.87826 0.92365 0.93728 0.96019 0.89561 0.93669 0.96111 0.92839 0.92802 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.54 37.16 0.28 -1.68 16 2 C -0.06 -0.93 0.53 -154.47 -0.08 -1.02 16 3 C 0.13 1.77 4.56 -4.04 -0.02 1.75 16 4 N -0.70 -8.65 4.93 -61.60 -0.30 -8.96 16 5 C 0.60 8.57 7.79 -12.84 -0.10 8.47 16 6 O -0.53 -9.44 17.11 1.34 0.02 -9.42 16 7 C -0.10 -1.25 7.22 -36.84 -0.27 -1.51 16 8 C 0.03 0.30 11.37 -17.42 -0.20 0.10 16 9 N -0.48 -5.68 10.79 -10.81 -0.12 -5.79 16 10 C 0.24 2.72 7.87 -12.80 -0.10 2.62 16 11 C -0.09 -0.65 6.33 -91.77 -0.58 -1.23 16 12 C -0.14 -0.81 10.13 -26.69 -0.27 -1.08 16 13 C -0.15 -0.83 10.24 -26.69 -0.27 -1.11 16 14 O -0.17 -2.24 10.79 0.56 0.01 -2.23 16 15 C -0.13 -2.23 4.75 -26.61 -0.13 -2.36 16 16 C 0.17 3.75 4.84 -3.71 -0.02 3.73 16 17 N -0.59 -13.96 2.99 -172.32 -0.52 -14.48 16 18 C -0.25 -6.67 9.59 -15.06 -0.14 -6.81 16 19 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 21 N -0.90 -25.44 11.19 55.49 0.62 -24.82 16 22 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.15 2.85 6.04 -3.71 -0.02 2.83 16 27 C -0.12 -1.90 4.91 -26.61 -0.13 -2.03 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.25 4.98 -51.93 -0.26 0.99 16 30 H 0.04 0.53 6.86 -51.93 -0.36 0.17 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.40 4.23 5.06 -40.82 -0.21 4.02 16 34 H 0.20 1.57 7.44 -52.48 -0.39 1.18 16 35 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.11 0.78 7.87 -51.93 -0.41 0.37 16 37 H 0.11 0.39 8.14 -51.92 -0.42 -0.04 16 38 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.65 6.82 -51.93 -0.35 0.30 16 42 H 0.02 0.49 6.69 -51.93 -0.35 0.15 16 43 H 0.09 2.19 6.04 -51.93 -0.31 1.88 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.02 0.41 6.69 -51.92 -0.35 0.06 16 46 H 0.05 1.05 7.94 -51.93 -0.41 0.63 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -32.24 381.33 -8.88 -41.12 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.17 Total: 1.86 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.14 Total: 0.63 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.32 Total: -54.05 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.03 Total: -11.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.24 -8.88 -41.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716885286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.117 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds