Wall clock time and date at job start Tue Mar 31 2020 17:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.45968 * 2 1 4 4 N 1.46504 * 109.47056 * 60.02640 * 3 2 1 5 5 C 1.34771 * 119.99693 * 180.02562 * 4 3 2 6 6 O 1.21689 * 120.00187 * 359.72418 * 5 4 3 7 7 C 1.46721 * 119.99674 * 180.02562 * 5 4 3 8 8 C 1.36340 * 126.64603 * 359.74353 * 7 5 4 9 9 N 1.33695 * 107.45448 * 179.97438 * 8 7 5 10 10 C 1.30619 * 108.99519 * 0.02562 * 9 8 7 11 11 C 1.50695 * 125.42317 * 180.02562 * 10 9 8 12 12 C 1.53004 * 117.49641 * 8.72168 * 11 10 9 13 13 C 1.53006 * 117.50035 * 300.06395 * 11 10 9 14 14 O 1.33665 * 109.15151 * 359.75273 * 10 9 8 15 15 C 1.53040 * 109.45005 * 119.96699 * 2 1 3 16 16 C 1.53193 * 109.31178 * 58.64706 * 15 2 1 17 17 N 1.46928 * 108.77617 * 54.63792 * 16 15 2 18 18 C 1.36929 * 120.62925 * 126.40968 * 17 16 15 19 19 H 1.08004 * 119.99948 * 207.66124 * 18 17 16 20 20 C 1.38809 * 120.00144 * 27.66718 * 18 17 16 21 21 N 1.31618 * 120.00312 * 17.36578 * 20 18 17 22 22 Si 1.86805 * 119.99931 * 197.36509 * 20 18 17 23 23 H 1.48497 * 109.47252 * 89.99789 * 22 20 18 24 24 H 1.48502 * 109.47234 * 209.99695 * 22 20 18 25 25 H 1.48500 * 109.47093 * 329.99618 * 22 20 18 26 26 C 1.46925 * 118.73725 * 306.38956 * 17 16 15 27 27 C 1.53042 * 109.45925 * 240.02833 * 2 1 3 28 28 H 1.08999 * 109.47589 * 60.00122 * 1 2 3 29 29 H 1.09004 * 109.47325 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47501 * 299.99698 * 1 2 3 31 31 H 1.09001 * 109.47049 * 300.02544 * 3 2 1 32 32 H 1.08997 * 109.47063 * 180.02562 * 3 2 1 33 33 H 0.97003 * 119.99787 * 359.97438 * 4 3 2 34 34 H 1.08004 * 126.27095 * 359.96562 * 8 7 5 35 35 H 1.09002 * 115.55247 * 154.39039 * 11 10 9 36 36 H 1.09000 * 117.50104 * 0.02562 * 12 11 10 37 37 H 1.09010 * 117.49637 * 145.02309 * 12 11 10 38 38 H 1.08993 * 117.49948 * 214.97663 * 13 11 10 39 39 H 1.09003 * 117.49613 * 359.97438 * 13 11 10 40 40 H 1.08992 * 109.49932 * 178.59974 * 15 2 1 41 41 H 1.09006 * 109.49636 * 298.69663 * 15 2 1 42 42 H 1.08997 * 109.58870 * 294.84547 * 16 15 2 43 43 H 1.08998 * 109.58410 * 174.42192 * 16 15 2 44 44 H 0.96994 * 119.99986 * 180.02562 * 21 20 18 45 45 H 1.09009 * 109.58597 * 293.82314 * 26 17 16 46 46 H 1.09001 * 109.70454 * 173.46713 * 26 17 16 47 47 H 1.09005 * 109.49994 * 61.30894 * 27 2 1 48 48 H 1.08996 * 109.49635 * 181.40587 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5517 2.1329 1.1965 5 6 1.8767 3.4234 1.4095 6 8 2.5796 4.0137 0.6106 7 6 1.3885 4.1146 2.6081 8 6 0.5990 3.5874 3.5867 9 7 0.3877 4.5479 4.4924 10 6 1.0084 5.6331 4.1140 11 6 1.0178 6.9404 4.8634 12 6 0.4137 6.9531 6.2691 13 6 -0.3291 7.6229 5.1103 14 8 1.6388 5.3975 2.9591 15 6 2.0396 -0.7208 1.2501 16 6 1.4990 -2.1541 1.2643 17 7 1.8620 -2.8090 0.0001 18 6 2.5253 -4.0069 0.0003 19 1 3.1670 -4.2689 -0.8280 20 6 2.3730 -4.8845 1.0649 21 7 1.3597 -4.7447 1.8932 22 14 3.6061 -6.2639 1.3220 23 1 4.7077 -5.7866 2.1958 24 1 2.9296 -7.4192 1.9648 25 1 4.1611 -6.6827 0.0098 26 6 1.4993 -2.1542 -1.2642 27 6 2.0398 -0.7209 -1.2500 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6759 1.9565 -0.8898 32 1 3.1297 1.4428 -0.0005 33 1 0.9941 1.6614 1.8350 34 1 0.2145 2.5788 3.6234 35 1 1.8806 7.5809 4.6806 36 1 0.0098 6.0158 6.6519 37 1 0.8788 7.6025 7.0109 38 1 -0.3524 8.7124 5.0902 39 1 -1.2220 7.1265 4.7302 40 1 3.1292 -0.7431 1.2385 41 1 1.6955 -0.1934 2.1399 42 1 0.4141 -2.1345 1.3673 43 1 1.9375 -2.7017 2.0985 44 1 1.2535 -5.3578 2.6373 45 1 0.4143 -2.1346 -1.3674 46 1 1.9359 -2.7012 -2.0998 47 1 1.6959 -0.1935 -2.1399 48 1 3.1295 -0.7431 -1.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716885286.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:02 Heat of formation + Delta-G solvation = 12.481338 kcal Electronic energy + Delta-G solvation = -28652.618022 eV Core-core repulsion = 24709.850093 eV Total energy + Delta-G solvation = -3942.767930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.61913 -41.15246 -39.81972 -38.26104 -36.74300 -36.00576 -34.78214 -32.87591 -31.58495 -31.49005 -28.71354 -28.06337 -26.33473 -25.25995 -24.56524 -23.88074 -23.30123 -22.55776 -21.85480 -21.68276 -19.82323 -19.41698 -18.26280 -18.12882 -17.93331 -17.22458 -16.80941 -16.38549 -16.02868 -15.83761 -15.59878 -15.51378 -15.47217 -15.01829 -14.96958 -14.53857 -14.40816 -14.05289 -13.48993 -13.35944 -13.16625 -12.96078 -12.80411 -12.66315 -12.57042 -12.44951 -12.32877 -12.24994 -12.15538 -11.90356 -11.88622 -11.78324 -11.56938 -11.46959 -11.41545 -11.08537 -11.04322 -10.48443 -10.37845 -9.91516 -8.61533 -7.85100 -5.28126 -0.39987 0.91487 1.16677 1.46134 1.48233 1.55899 1.89648 2.26531 2.52329 2.71584 2.92688 3.28496 3.39910 3.66848 3.71906 3.75607 3.78566 3.86035 3.93222 3.94942 3.97576 4.34350 4.41069 4.52114 4.53607 4.62061 4.72045 4.75520 4.76676 4.84823 4.87003 4.87157 4.95643 4.97650 5.10022 5.10905 5.11836 5.18688 5.24022 5.31308 5.34274 5.42858 5.51963 5.57981 5.69211 5.88110 6.17435 6.40173 6.42679 6.86996 7.19339 7.92342 8.41842 9.20359 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.002321 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.632311 B =12061.947695 C =12891.187958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.142 3.858 4 N -0.688 5.688 5 C 0.603 3.397 6 O -0.570 6.570 7 C -0.126 4.126 8 C 0.045 3.955 9 N -0.502 5.502 10 C 0.250 3.750 11 C -0.111 4.111 12 C -0.134 4.134 13 C -0.140 4.140 14 O -0.187 6.187 15 C -0.119 4.119 16 C 0.178 3.822 17 N -0.610 5.610 18 C -0.258 4.258 19 H 0.062 0.938 20 C -0.050 4.050 21 N -0.931 5.931 22 Si 0.960 3.040 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.142 3.858 27 C -0.112 4.112 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.415 0.585 34 H 0.224 0.776 35 H 0.154 0.846 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.010 0.990 43 H 0.047 0.953 44 H 0.249 0.751 45 H 0.024 0.976 46 H 0.047 0.953 47 H 0.084 0.916 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 23.922 5.583 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C 0.019 3.981 4 N -0.341 5.341 5 C 0.389 3.611 6 O -0.450 6.450 7 C -0.182 4.182 8 C -0.098 4.098 9 N -0.231 5.231 10 C 0.046 3.954 11 C -0.131 4.131 12 C -0.171 4.171 13 C -0.178 4.178 14 O -0.073 6.073 15 C -0.159 4.159 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.389 4.389 19 H 0.080 0.920 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.789 3.211 23 H -0.215 1.215 24 H -0.222 1.222 25 H -0.196 1.196 26 C 0.017 3.983 27 C -0.152 4.152 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.254 0.746 34 H 0.240 0.760 35 H 0.172 0.828 36 H 0.117 0.883 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.028 0.972 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.103 0.897 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.274 24.204 5.625 25.214 hybrid contribution 0.872 -1.580 -0.211 1.817 sum -3.402 22.624 5.414 23.510 Atomic orbital electron populations 1.21910 0.93368 1.02023 1.02380 1.20576 0.96659 0.91905 0.96234 1.21506 0.98942 0.91204 0.86448 1.45542 1.52790 1.09368 1.26433 1.16381 0.79924 0.82142 0.82684 1.90846 1.39426 1.67061 1.47687 1.22623 1.09493 0.84324 1.01754 1.24215 0.95782 1.01305 0.88487 1.70365 1.23929 0.99666 1.29157 1.26354 0.89255 0.97514 0.82302 1.20579 1.02754 0.89475 1.00247 1.23243 1.00974 1.03678 0.89210 1.23280 0.91942 1.01749 1.00828 1.84451 1.58469 1.28251 1.36153 1.22087 0.99779 0.97029 0.96957 1.20610 0.95596 0.89912 0.88665 1.44295 1.66907 1.20820 1.01313 1.19479 1.19044 0.94478 1.05887 0.92032 1.25685 0.98712 0.99922 1.00215 1.70157 1.29363 1.39832 1.18408 0.85371 0.78872 0.78916 0.77929 1.21506 1.22227 1.19597 1.21052 0.96669 0.92392 0.88207 1.21890 1.00295 0.96064 0.96905 0.91340 0.93249 0.91656 0.90199 0.91882 0.74642 0.75951 0.82848 0.88283 0.84664 0.84559 0.88913 0.93732 0.91110 0.97201 0.93482 0.94222 0.95856 0.93410 0.89707 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 7.54 71.98 0.54 -2.93 16 2 C -0.05 -1.45 0.53 -52.15 -0.03 -1.47 16 3 C 0.14 3.48 4.56 86.38 0.39 3.87 16 4 N -0.69 -15.54 4.93 -467.04 -2.30 -17.84 16 5 C 0.60 16.67 7.79 86.46 0.67 17.34 16 6 O -0.57 -20.28 17.11 -0.63 -0.01 -20.29 16 7 C -0.13 -3.20 7.22 24.05 0.17 -3.02 16 8 C 0.05 0.93 11.37 83.97 0.95 1.89 16 9 N -0.50 -11.13 10.79 -302.88 -3.27 -14.40 16 10 C 0.25 5.33 7.87 88.29 0.69 6.02 16 11 C -0.11 -1.43 6.33 -11.54 -0.07 -1.50 16 12 C -0.13 -1.20 10.13 30.62 0.31 -0.89 16 13 C -0.14 -1.20 10.24 30.62 0.31 -0.89 16 14 O -0.19 -4.99 10.79 -3.41 -0.04 -5.03 16 15 C -0.12 -3.95 4.75 30.67 0.15 -3.81 16 16 C 0.18 7.93 4.84 86.36 0.42 8.34 16 17 N -0.61 -29.18 2.99 -699.08 -2.09 -31.28 16 18 C -0.26 -13.97 9.59 84.03 0.81 -13.16 16 19 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 20 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 21 N -0.93 -53.89 11.19 21.65 0.24 -53.65 16 22 Si 0.96 44.71 29.59 68.60 2.03 46.74 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 26 C 0.14 5.49 6.04 86.36 0.52 6.01 16 27 C -0.11 -3.36 4.91 30.67 0.15 -3.21 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.53 4.98 -2.39 -0.01 1.52 16 30 H 0.06 1.34 6.86 -2.39 -0.02 1.32 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.41 7.51 5.06 -92.71 -0.47 7.04 16 34 H 0.22 2.97 7.44 -2.91 -0.02 2.95 16 35 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 37 H 0.14 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.95 6.82 -2.38 -0.02 1.93 16 42 H 0.01 0.46 6.69 -2.39 -0.02 0.45 16 43 H 0.05 2.46 6.04 -2.39 -0.01 2.45 16 44 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 45 H 0.02 0.90 6.69 -2.38 -0.02 0.88 16 46 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 47 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 48 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -72.39 381.33 1.49 -70.91 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.51 Total: 14.59 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.42 Total: 10.25 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -7.42 Total: -117.16 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.32 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -72.39 1.49 -70.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716885286.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.387 kcal (2) G-P(sol) polarization free energy of solvation -72.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds