Wall clock time and date at job start Tue Mar 31 2020 17:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35429 * 119.47378 * 2 1 4 4 C 1.35759 * 121.23324 * 180.02562 * 3 2 1 5 5 C 1.39474 * 120.12500 * 359.97291 * 4 3 2 6 6 C 1.39335 * 118.96465 * 0.27712 * 5 4 3 7 7 C 1.47078 * 120.58664 * 179.72349 * 6 5 4 8 8 O 1.21643 * 120.00340 * 353.99080 * 7 6 5 9 9 N 1.34774 * 119.99575 * 173.99303 * 7 6 5 10 10 C 1.46502 * 119.99885 * 184.81672 * 9 7 6 11 11 C 1.52999 * 109.47481 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46122 * 60.02339 * 11 10 9 13 13 C 1.53046 * 109.45786 * 300.06689 * 11 10 9 14 14 C 1.53192 * 109.31029 * 178.61558 * 13 11 10 15 15 N 1.46924 * 108.77955 * 54.63086 * 14 13 11 16 16 C 1.36942 * 120.62793 * 126.40922 * 15 14 13 17 17 H 1.07992 * 120.00095 * 328.15881 * 16 15 14 18 18 C 1.38812 * 119.99339 * 148.15622 * 16 15 14 19 19 N 1.31621 * 119.99391 * 165.42183 * 18 16 15 20 20 Si 1.86793 * 120.00567 * 345.41851 * 18 16 15 21 21 H 1.48497 * 109.47186 * 90.73035 * 20 18 16 22 22 H 1.48492 * 109.47618 * 210.73474 * 20 18 16 23 23 H 1.48501 * 109.46879 * 330.73230 * 20 18 16 24 24 C 1.46923 * 118.73930 * 306.39345 * 15 14 13 25 25 C 1.53034 * 109.46345 * 179.97438 * 11 10 9 26 26 C 1.34653 * 119.46654 * 179.97438 * 2 1 3 27 27 O 1.21886 * 120.10605 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.46451 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46877 * 120.00061 * 1 2 3 30 30 H 1.08993 * 109.47424 * 240.00556 * 1 2 3 31 31 H 1.07998 * 119.38193 * 359.97392 * 3 2 1 32 32 H 1.07991 * 119.93747 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.51260 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00656 * 4.80834 * 9 7 6 35 35 H 1.09007 * 109.46871 * 299.99652 * 10 9 7 36 36 H 1.09001 * 109.47530 * 59.99548 * 10 9 7 37 37 H 1.08992 * 109.47140 * 59.99791 * 12 11 10 38 38 H 1.08999 * 109.47012 * 180.02562 * 12 11 10 39 39 H 1.09011 * 109.47029 * 300.00198 * 12 11 10 40 40 H 1.09000 * 109.49553 * 298.56528 * 13 11 10 41 41 H 1.08997 * 109.49859 * 58.66049 * 13 11 10 42 42 H 1.09005 * 109.58281 * 294.84064 * 14 13 11 43 43 H 1.09000 * 109.57994 * 174.42215 * 14 13 11 44 44 H 0.96999 * 119.99647 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.58282 * 293.81804 * 24 15 14 46 46 H 1.09000 * 109.70619 * 173.46395 * 24 15 14 47 47 H 1.09008 * 109.49689 * 301.33249 * 25 11 10 48 48 H 1.08993 * 109.50026 * 61.43086 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1314 1.1790 0.0000 4 6 3.4884 1.2207 -0.0005 5 6 4.2251 0.0364 -0.0005 6 6 3.5464 -1.1805 -0.0058 7 6 4.2876 -2.4508 -0.0121 8 8 5.4990 -2.4477 -0.1230 9 7 3.6246 -3.6183 0.1049 10 6 4.3687 -4.8764 0.2049 11 6 3.3854 -6.0421 0.3282 12 6 2.4830 -6.0805 -0.9067 13 6 2.5268 -5.8545 1.5811 14 6 1.5205 -7.0051 1.6826 15 7 2.2519 -8.2786 1.6373 16 6 2.0763 -9.2192 2.6169 17 1 1.8546 -8.9111 3.6279 18 6 2.1831 -10.5688 2.3102 19 7 2.3019 -11.4556 3.2755 20 14 2.1579 -11.1265 0.5276 21 1 3.5463 -11.1677 0.0022 22 1 1.5555 -12.4809 0.4410 23 1 1.3521 -10.1739 -0.2777 24 6 3.1752 -8.5237 0.5210 25 6 4.1629 -7.3561 0.4320 26 6 2.1275 -1.1723 0.0005 27 8 1.5102 -2.2233 0.0005 28 1 -0.3632 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3634 -0.5137 0.8900 31 1 1.5729 2.1033 -0.0004 32 1 3.9983 2.1726 -0.0009 33 1 5.3048 0.0623 -0.0005 34 1 2.6548 -3.6258 0.1231 35 1 4.9798 -5.0089 -0.6879 36 1 5.0117 -4.8493 1.0846 37 1 3.0941 -6.2134 -1.7993 38 1 1.7821 -6.9107 -0.8189 39 1 1.9294 -5.1445 -0.9815 40 1 3.1666 -5.8519 2.4636 41 1 1.9912 -4.9074 1.5167 42 1 0.8225 -6.9547 0.8469 43 1 0.9741 -6.9307 2.6228 44 1 2.3769 -12.3986 3.0612 45 1 2.6120 -8.5972 -0.4094 46 1 3.7207 -9.4517 0.6922 47 1 4.7916 -7.4775 -0.4503 48 1 4.7876 -7.3397 1.3250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716888952.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:31 Heat of formation + Delta-G solvation = -7.131261 kcal Electronic energy + Delta-G solvation = -29621.046869 eV Core-core repulsion = 25677.428473 eV Total energy + Delta-G solvation = -3943.618396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90274 -39.66781 -38.44464 -37.56179 -35.10519 -34.80739 -32.88461 -31.22600 -30.56931 -30.25904 -28.20399 -27.30607 -26.91655 -24.94897 -23.52894 -23.13084 -22.64753 -20.99666 -20.68958 -18.39605 -18.03004 -17.82942 -17.37501 -16.64388 -16.41014 -15.94481 -15.56012 -15.21634 -15.01385 -14.87927 -14.19202 -14.12096 -13.93518 -13.77697 -13.50839 -13.32287 -13.28022 -12.98323 -12.94758 -12.59377 -12.39193 -12.30132 -12.03260 -11.85764 -11.59333 -11.36977 -10.75144 -10.65469 -10.54378 -10.48243 -10.41568 -10.29521 -10.00782 -9.85612 -9.65994 -9.50368 -9.34290 -8.79548 -8.53932 -8.44934 -6.78519 -5.86442 -3.27455 0.02496 1.35601 2.01809 2.61057 3.38025 3.42441 3.52928 3.55503 3.56493 3.95468 4.01766 4.48315 4.53434 4.59754 4.73436 4.74260 4.81956 5.07917 5.08681 5.11459 5.18822 5.28112 5.33455 5.48568 5.49488 5.71024 5.77037 5.88960 5.91635 5.97611 6.04900 6.12331 6.15024 6.22440 6.34969 6.41675 6.42979 6.53690 6.59470 6.67547 6.72733 6.80773 6.84119 6.85190 7.12001 7.42317 7.89655 8.10382 8.43220 8.46708 9.04295 9.80477 10.21620 11.30023 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.002796 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.704063 B =10012.844998 C =10584.482784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.493 5.493 3 C 0.156 3.844 4 C -0.240 4.240 5 C 0.056 3.944 6 C -0.270 4.270 7 C 0.571 3.429 8 O -0.557 6.557 9 N -0.709 5.709 10 C 0.128 3.872 11 C -0.063 4.063 12 C -0.145 4.145 13 C -0.124 4.124 14 C 0.149 3.851 15 N -0.606 5.606 16 C -0.256 4.256 17 H 0.083 0.917 18 C 0.022 3.978 19 N -0.916 5.916 20 Si 0.891 3.109 21 H -0.288 1.288 22 H -0.306 1.306 23 H -0.270 1.270 24 C 0.125 3.875 25 C -0.121 4.121 26 C 0.527 3.473 27 O -0.535 6.535 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.417 0.583 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.025 0.975 43 H 0.060 0.940 44 H 0.262 0.738 45 H 0.028 0.972 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 31.081 -9.149 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.201 5.201 3 C 0.026 3.974 4 C -0.263 4.263 5 C 0.033 3.967 6 C -0.278 4.278 7 C 0.357 3.643 8 O -0.438 6.438 9 N -0.370 5.370 10 C 0.004 3.996 11 C -0.063 4.063 12 C -0.202 4.202 13 C -0.163 4.163 14 C 0.024 3.976 15 N -0.330 5.330 16 C -0.385 4.385 17 H 0.101 0.899 18 C -0.177 4.177 19 N -0.559 5.559 20 Si 0.722 3.278 21 H -0.216 1.216 22 H -0.234 1.234 23 H -0.195 1.195 24 C -0.001 4.001 25 C -0.160 4.160 26 C 0.329 3.671 27 O -0.417 6.417 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.186 0.814 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.604 30.154 -9.142 31.550 hybrid contribution -0.339 -0.230 -0.923 1.010 sum -1.942 29.924 -10.066 31.632 Atomic orbital electron populations 1.22280 0.76285 1.04274 1.05358 1.45385 1.09781 1.06700 1.58276 1.22274 0.94271 0.89395 0.91424 1.20711 0.92333 0.99805 1.13474 1.22044 1.01783 0.90282 0.82627 1.21109 0.92142 0.95910 1.18595 1.17412 0.86623 0.83241 0.76992 1.90768 1.13531 1.87648 1.51898 1.46640 1.12950 1.05336 1.72070 1.21505 0.94220 0.82338 1.01544 1.20657 0.95344 0.94052 0.96293 1.21965 0.99730 1.02017 0.96502 1.22058 0.98777 0.98812 0.96638 1.20948 0.92297 0.85045 0.99338 1.44312 1.45817 1.16355 1.26553 1.18930 1.44651 0.85471 0.89407 0.89949 1.25385 0.99430 0.95796 0.97044 1.69788 1.53212 1.01551 1.31364 0.86840 0.77381 0.76875 0.86710 1.21586 1.23413 1.19472 1.21390 0.91196 0.96446 0.91030 1.22007 0.98248 0.94589 1.01203 1.17052 0.88228 0.82901 0.78954 1.90673 1.68925 1.28976 1.53097 0.89056 0.89527 0.89404 0.81392 0.82779 0.83207 0.73597 0.91837 0.91696 0.93224 0.91289 0.92992 0.91950 0.92683 0.95748 0.92143 0.92858 0.95397 0.91179 0.92637 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.04 59.85 0.60 0.84 16 2 N -0.49 -3.30 2.98 -126.76 -0.38 -3.68 16 3 C 0.16 0.55 10.28 -16.85 -0.17 0.37 16 4 C -0.24 -1.06 9.99 -40.01 -0.40 -1.46 16 5 C 0.06 0.47 9.69 -38.71 -0.38 0.09 16 6 C -0.27 -3.26 5.92 -104.51 -0.62 -3.88 16 7 C 0.57 8.97 7.73 -12.68 -0.10 8.87 16 8 O -0.56 -10.05 16.41 5.24 0.09 -9.96 16 9 N -0.71 -11.25 4.86 -61.49 -0.30 -11.55 16 10 C 0.13 2.08 4.57 -4.04 -0.02 2.06 16 11 C -0.06 -1.08 0.53 -154.47 -0.08 -1.16 16 12 C -0.14 -2.37 7.54 37.16 0.28 -2.09 16 13 C -0.12 -2.24 4.75 -26.61 -0.13 -2.36 16 14 C 0.15 3.13 6.05 -3.71 -0.02 3.10 16 15 N -0.61 -14.94 2.73 -172.32 -0.47 -15.41 16 16 C -0.26 -7.39 10.04 -15.06 -0.15 -7.54 16 17 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 18 C 0.02 0.65 5.31 -17.43 -0.09 0.56 16 19 N -0.92 -28.87 13.97 55.49 0.78 -28.10 16 20 Si 0.89 23.24 24.29 -169.99 -4.13 19.11 16 21 H -0.29 -7.26 6.62 56.52 0.37 -6.89 16 22 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 23 H -0.27 -6.88 6.43 56.52 0.36 -6.52 16 24 C 0.12 2.82 3.69 -3.71 -0.01 2.81 16 25 C -0.12 -2.27 4.91 -26.61 -0.13 -2.40 16 26 C 0.53 5.98 7.44 -14.92 -0.11 5.86 16 27 O -0.54 -7.58 13.70 5.02 0.07 -7.51 16 28 H 0.09 0.01 7.70 -51.93 -0.40 -0.39 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.17 -0.18 7.79 -52.49 -0.41 -0.59 16 32 H 0.15 0.20 8.06 -52.49 -0.42 -0.22 16 33 H 0.15 1.19 7.71 -52.48 -0.40 0.79 16 34 H 0.42 6.62 2.76 -40.82 -0.11 6.50 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.23 4.98 -51.93 -0.26 0.97 16 39 H 0.05 0.81 6.86 -51.92 -0.36 0.45 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.93 6.82 -51.93 -0.35 0.57 16 42 H 0.02 0.50 6.69 -51.93 -0.35 0.15 16 43 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.03 0.63 5.40 -51.93 -0.28 0.35 16 46 H 0.07 1.73 4.63 -51.93 -0.24 1.49 16 47 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 48 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -37.33 366.41 -7.36 -44.69 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.00 Total: 3.20 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.53 Total: 3.67 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.37 Total: -58.73 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.15 Total: -17.47 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.13 Total: 19.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.33 -7.36 -44.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716888952.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.560 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds