Wall clock time and date at job start Tue Mar 31 2020 17:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38350 * 119.45883 * 2 1 4 4 C 1.38361 * 119.29923 * 179.69898 * 3 2 1 5 5 C 1.50702 * 120.85364 * 180.30229 * 4 3 2 6 6 C 1.40025 * 118.28785 * 0.54608 * 4 3 2 7 7 C 1.47844 * 120.55353 * 179.73313 * 6 4 3 8 8 O 1.21548 * 119.99996 * 269.71957 * 7 6 4 9 9 N 1.34776 * 119.99793 * 89.72773 * 7 6 4 10 10 C 1.46505 * 119.99778 * 174.89238 * 9 7 6 11 11 C 1.53003 * 113.28079 * 307.39424 * 10 9 7 12 12 C 1.53000 * 109.46660 * 292.22691 * 11 10 9 13 13 O 1.42899 * 109.46723 * 184.19958 * 12 11 10 14 14 C 1.53490 * 114.20623 * 174.32675 * 10 9 7 15 15 N 1.47064 * 87.98571 * 220.14937 * 14 10 9 16 16 C 1.36942 * 136.05550 * 206.86968 * 15 14 10 17 17 H 1.08001 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99761 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99714 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47345 * 90.00045 * 20 18 16 22 22 H 1.48503 * 109.46822 * 210.00077 * 20 18 16 23 23 H 1.48503 * 109.47232 * 329.99786 * 20 18 16 24 24 C 1.47061 * 87.88839 * 27.11937 * 15 14 10 25 25 C 1.39513 * 118.87952 * 359.46020 * 6 4 3 26 26 C 1.50708 * 119.71152 * 180.25183 * 25 6 4 27 27 N 1.31685 * 120.57175 * 0.27327 * 25 6 4 28 28 H 1.08998 * 109.46837 * 270.01369 * 1 2 3 29 29 H 1.08997 * 109.47219 * 30.02031 * 1 2 3 30 30 H 1.08999 * 109.47159 * 150.01692 * 1 2 3 31 31 H 1.08002 * 120.35018 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47357 * 270.24894 * 5 4 3 33 33 H 1.09000 * 109.47324 * 30.24823 * 5 4 3 34 34 H 1.08999 * 109.47047 * 150.24614 * 5 4 3 35 35 H 0.96999 * 120.00388 * 354.88477 * 9 7 6 36 36 H 1.08996 * 109.47078 * 52.22692 * 11 10 9 37 37 H 1.08998 * 109.46991 * 172.22523 * 11 10 9 38 38 H 1.08995 * 109.47412 * 304.19803 * 12 11 10 39 39 H 1.09000 * 109.47693 * 64.20169 * 12 11 10 40 40 H 0.96702 * 114.00139 * 179.97438 * 13 12 11 41 41 H 1.08996 * 113.46650 * 105.36831 * 14 10 9 42 42 H 1.09005 * 113.46794 * 334.92800 * 14 10 9 43 43 H 0.96999 * 120.00085 * 180.02562 * 19 18 16 44 44 H 1.08994 * 113.46715 * 87.66017 * 24 15 14 45 45 H 1.08997 * 113.47183 * 218.10345 * 24 15 14 46 46 H 1.09003 * 109.46768 * 90.00390 * 26 25 6 47 47 H 1.08996 * 109.47052 * 209.99729 * 26 25 6 48 48 H 1.08997 * 109.46959 * 330.00089 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0063 5 6 4.3475 2.4924 0.0134 6 6 4.2312 -0.0341 0.0008 7 6 5.7083 -0.0966 0.0012 8 8 6.3158 -0.1224 -1.0512 9 7 6.3812 -0.1251 1.1686 10 6 7.8358 -0.2997 1.1716 11 6 8.3003 -1.5172 0.3698 12 6 7.8435 -2.7962 1.0743 13 8 8.3600 -3.9331 0.3794 14 6 8.4818 -0.1756 2.5584 15 7 9.5825 0.5638 1.9223 16 6 10.9100 0.7742 2.1845 17 1 11.3654 0.3290 3.0568 18 6 11.6703 1.5597 1.3290 19 7 11.1155 2.1018 0.2657 20 14 13.4810 1.8473 1.6870 21 1 14.2895 0.7883 1.0315 22 1 13.8848 3.1758 1.1601 23 1 13.7081 1.8069 3.1540 24 6 8.6287 0.9829 0.8844 25 6 3.4716 -1.2042 0.0007 26 6 4.1628 -2.5435 0.0005 27 7 2.1559 -1.1487 0.0003 28 1 -0.3633 0.0002 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6443 2.1381 0.0004 32 1 4.5356 2.8089 -1.0126 33 1 3.7715 3.2598 0.5305 34 1 5.2969 2.3427 0.5273 35 1 5.9025 -0.0299 2.0069 36 1 7.8692 -1.4795 -0.6306 37 1 9.3879 -1.5110 0.2971 38 1 8.2133 -2.7982 2.0996 39 1 6.7543 -2.8384 1.0807 40 1 8.1098 -4.7809 0.7717 41 1 8.7887 -1.1321 2.9814 42 1 7.9000 0.4271 3.2559 43 1 11.6469 2.6504 -0.3322 44 1 8.0861 1.8941 1.1359 45 1 9.0606 1.0114 -0.1160 46 1 4.3293 -2.8664 1.0282 47 1 3.5385 -3.2744 -0.5133 48 1 5.1202 -2.4581 -0.5133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717506908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:51 Heat of formation + Delta-G solvation = 0.010642 kcal Electronic energy + Delta-G solvation = -29857.592659 eV Core-core repulsion = 25914.283960 eV Total energy + Delta-G solvation = -3943.308700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97974 -39.73207 -37.85411 -36.43747 -34.36606 -33.93920 -33.54930 -31.91173 -30.37720 -29.34618 -27.99366 -27.51772 -26.98604 -24.97378 -23.71293 -22.52805 -21.81279 -21.23505 -20.26120 -18.74595 -17.58995 -17.20080 -17.08159 -16.76309 -15.70807 -15.29276 -15.14191 -14.94209 -14.72927 -14.32434 -14.05520 -13.70057 -13.64651 -13.54132 -13.42794 -13.41027 -13.08586 -12.83132 -12.66060 -12.43410 -12.23342 -12.00559 -11.91204 -11.75393 -11.66266 -11.53890 -11.15515 -10.99390 -10.89078 -10.67092 -10.20663 -10.10422 -9.90434 -9.70210 -9.60326 -9.47485 -9.10830 -8.90302 -8.85774 -8.57400 -6.96118 -5.79642 -3.14731 0.76478 1.05453 2.76868 3.28069 3.38909 3.42885 3.45191 3.50673 3.98456 4.39237 4.40577 4.43061 4.45325 4.75817 4.87981 5.02269 5.17120 5.21668 5.24126 5.30089 5.32779 5.36701 5.42726 5.45983 5.50426 5.50914 5.51263 5.59378 5.67334 5.79910 5.86127 5.89631 5.94608 6.01534 6.11276 6.14967 6.30681 6.42664 6.49691 6.50803 6.82442 6.89169 7.19188 7.27265 7.54459 7.76447 7.81522 7.85634 7.93470 8.45521 8.98613 9.65499 10.54813 11.36803 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.003353 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.322287 B = 8348.126019 C = 9502.062956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.142 3.858 3 C -0.184 4.184 4 C 0.001 3.999 5 C -0.126 4.126 6 C -0.183 4.183 7 C 0.569 3.431 8 O -0.515 6.515 9 N -0.706 5.706 10 C 0.119 3.881 11 C -0.099 4.099 12 C 0.080 3.920 13 O -0.571 6.571 14 C 0.118 3.882 15 N -0.599 5.599 16 C -0.223 4.223 17 H 0.083 0.917 18 C -0.003 4.003 19 N -0.913 5.913 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.161 3.839 25 C 0.172 3.828 26 C -0.112 4.112 27 N -0.490 5.490 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.396 0.604 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.371 0.629 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.255 0.745 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.674 -5.452 2.700 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.204 4.204 4 C -0.007 4.007 5 C -0.182 4.182 6 C -0.188 4.188 7 C 0.353 3.647 8 O -0.390 6.390 9 N -0.357 5.357 10 C 0.033 3.967 11 C -0.137 4.137 12 C 0.003 3.997 13 O -0.376 6.376 14 C -0.009 4.009 15 N -0.325 5.325 16 C -0.350 4.350 17 H 0.101 0.899 18 C -0.201 4.201 19 N -0.559 5.559 20 Si 0.744 3.256 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.034 3.966 25 C 0.034 3.966 26 C -0.169 4.169 27 N -0.201 5.201 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.156 0.844 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.230 0.770 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.216 0.784 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.057 -5.627 1.494 20.885 hybrid contribution 0.801 0.871 1.071 1.597 sum -19.256 -4.756 2.565 20.000 Atomic orbital electron populations 1.20732 0.88657 1.03560 1.03151 1.21370 0.97011 0.88140 0.92983 1.21739 0.93703 0.99420 1.05529 1.20380 0.93730 0.94640 0.91931 1.20951 1.00263 0.93110 1.03883 1.20815 0.95046 0.94459 1.08474 1.17924 0.85746 0.76494 0.84545 1.90822 1.68770 1.48272 1.31184 1.46086 1.08454 1.73369 1.07785 1.22695 0.76692 0.98460 0.98892 1.21336 1.03512 0.89124 0.99713 1.22220 0.96124 0.86326 0.95080 1.86540 1.77835 1.16200 1.56999 1.22685 0.89828 0.96083 0.92339 1.45240 1.03403 1.57211 1.26603 1.18851 0.81305 1.26852 1.07942 0.89919 1.24828 0.98382 0.99575 0.97292 1.69837 1.35099 1.36491 1.14471 0.86097 0.84519 0.77383 0.77580 1.21343 1.21597 1.20648 1.22390 0.87153 0.90555 0.96517 1.21249 0.88811 0.94599 0.91950 1.20861 1.00452 0.92213 1.03350 1.67352 1.08871 1.29120 1.14791 0.90256 0.90605 0.90373 0.84414 0.89642 0.90504 0.90313 0.77033 0.89455 0.88859 0.93799 0.94583 0.78359 0.93396 0.94711 0.93452 0.95604 0.90183 0.90015 0.89939 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.16 36.01 0.37 -0.37 16 2 C 0.14 1.53 6.78 -82.51 -0.56 0.97 16 3 C -0.18 -1.89 9.43 -39.50 -0.37 -2.26 16 4 C 0.00 0.02 5.95 -103.91 -0.62 -0.60 16 5 C -0.13 -1.42 9.69 36.01 0.35 -1.07 16 6 C -0.18 -2.54 5.65 -104.82 -0.59 -3.13 16 7 C 0.57 9.17 4.07 -12.33 -0.05 9.12 16 8 O -0.52 -10.47 15.10 5.32 0.08 -10.39 16 9 N -0.71 -10.58 5.23 -48.36 -0.25 -10.83 16 10 C 0.12 2.20 0.77 -131.70 -0.10 2.10 16 11 C -0.10 -1.90 4.88 -26.73 -0.13 -2.03 16 12 C 0.08 1.21 6.88 37.16 0.26 1.47 16 13 O -0.57 -8.65 13.66 -35.23 -0.48 -9.13 16 14 C 0.12 2.26 7.81 -8.51 -0.07 2.20 16 15 N -0.60 -14.95 3.56 -184.75 -0.66 -15.61 16 16 C -0.22 -6.13 10.75 -15.06 -0.16 -6.29 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 19 N -0.91 -27.20 11.51 55.49 0.64 -26.56 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.16 3.81 6.78 -8.51 -0.06 3.76 16 25 C 0.17 2.27 6.82 -82.18 -0.56 1.71 16 26 C -0.11 -1.28 9.49 36.01 0.34 -0.94 16 27 N -0.49 -6.24 10.17 -5.42 -0.06 -6.29 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.67 8.10 -51.93 -0.42 0.24 16 34 H 0.08 1.03 7.19 -51.93 -0.37 0.66 16 35 H 0.40 4.84 8.67 -40.82 -0.35 4.48 16 36 H 0.09 1.83 5.99 -51.93 -0.31 1.52 16 37 H 0.09 2.12 7.93 -51.93 -0.41 1.71 16 38 H 0.04 0.63 6.65 -51.93 -0.35 0.29 16 39 H 0.04 0.48 7.52 -51.93 -0.39 0.08 16 40 H 0.37 3.55 9.12 45.56 0.42 3.97 16 41 H 0.05 0.87 6.70 -51.93 -0.35 0.52 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 2.22 7.09 -51.93 -0.37 1.85 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.08 1.08 6.78 -51.93 -0.35 0.73 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -34.82 392.52 -8.50 -43.32 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.61 Total: 8.10 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.06 Total: 4.44 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.33 Total: -59.29 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.40 Total: -19.52 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.82 -8.50 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717506908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.334 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds