Wall clock time and date at job start Tue Mar 31 2020 17:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38350 * 119.45883 * 2 1 4 4 C 1.38361 * 119.29923 * 179.69898 * 3 2 1 5 5 C 1.50702 * 120.85364 * 180.30229 * 4 3 2 6 6 C 1.40025 * 118.28785 * 0.54608 * 4 3 2 7 7 C 1.47844 * 120.55353 * 179.73313 * 6 4 3 8 8 O 1.21548 * 119.99996 * 269.71957 * 7 6 4 9 9 N 1.34776 * 119.99793 * 89.72773 * 7 6 4 10 10 C 1.46505 * 119.99778 * 174.89238 * 9 7 6 11 11 C 1.53003 * 113.28079 * 307.39424 * 10 9 7 12 12 C 1.53000 * 109.46660 * 292.22691 * 11 10 9 13 13 O 1.42899 * 109.46723 * 184.19958 * 12 11 10 14 14 C 1.53490 * 114.20623 * 174.32675 * 10 9 7 15 15 N 1.47064 * 87.98571 * 220.14937 * 14 10 9 16 16 C 1.36942 * 136.05550 * 206.86968 * 15 14 10 17 17 H 1.08001 * 120.00049 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99761 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99714 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47345 * 90.00045 * 20 18 16 22 22 H 1.48503 * 109.46822 * 210.00077 * 20 18 16 23 23 H 1.48503 * 109.47232 * 329.99786 * 20 18 16 24 24 C 1.47061 * 87.88839 * 27.11937 * 15 14 10 25 25 C 1.39513 * 118.87952 * 359.46020 * 6 4 3 26 26 C 1.50708 * 119.71152 * 180.25183 * 25 6 4 27 27 N 1.31685 * 120.57175 * 0.27327 * 25 6 4 28 28 H 1.08998 * 109.46837 * 270.01369 * 1 2 3 29 29 H 1.08997 * 109.47219 * 30.02031 * 1 2 3 30 30 H 1.08999 * 109.47159 * 150.01692 * 1 2 3 31 31 H 1.08002 * 120.35018 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47357 * 270.24894 * 5 4 3 33 33 H 1.09000 * 109.47324 * 30.24823 * 5 4 3 34 34 H 1.08999 * 109.47047 * 150.24614 * 5 4 3 35 35 H 0.96999 * 120.00388 * 354.88477 * 9 7 6 36 36 H 1.08996 * 109.47078 * 52.22692 * 11 10 9 37 37 H 1.08998 * 109.46991 * 172.22523 * 11 10 9 38 38 H 1.08995 * 109.47412 * 304.19803 * 12 11 10 39 39 H 1.09000 * 109.47693 * 64.20169 * 12 11 10 40 40 H 0.96702 * 114.00139 * 179.97438 * 13 12 11 41 41 H 1.08996 * 113.46650 * 105.36831 * 14 10 9 42 42 H 1.09005 * 113.46794 * 334.92800 * 14 10 9 43 43 H 0.96999 * 120.00085 * 180.02562 * 19 18 16 44 44 H 1.08994 * 113.46715 * 87.66017 * 24 15 14 45 45 H 1.08997 * 113.47183 * 218.10345 * 24 15 14 46 46 H 1.09003 * 109.46768 * 90.00390 * 26 25 6 47 47 H 1.08996 * 109.47052 * 209.99729 * 26 25 6 48 48 H 1.08997 * 109.46959 * 330.00089 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2008 0.0063 5 6 4.3475 2.4924 0.0134 6 6 4.2312 -0.0341 0.0008 7 6 5.7083 -0.0966 0.0012 8 8 6.3158 -0.1224 -1.0512 9 7 6.3812 -0.1251 1.1686 10 6 7.8358 -0.2997 1.1716 11 6 8.3003 -1.5172 0.3698 12 6 7.8435 -2.7962 1.0743 13 8 8.3600 -3.9331 0.3794 14 6 8.4818 -0.1756 2.5584 15 7 9.5825 0.5638 1.9223 16 6 10.9100 0.7742 2.1845 17 1 11.3654 0.3290 3.0568 18 6 11.6703 1.5597 1.3290 19 7 11.1155 2.1018 0.2657 20 14 13.4810 1.8473 1.6870 21 1 14.2895 0.7883 1.0315 22 1 13.8848 3.1758 1.1601 23 1 13.7081 1.8069 3.1540 24 6 8.6287 0.9829 0.8844 25 6 3.4716 -1.2042 0.0007 26 6 4.1628 -2.5435 0.0005 27 7 2.1559 -1.1487 0.0003 28 1 -0.3633 0.0002 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.6443 2.1381 0.0004 32 1 4.5356 2.8089 -1.0126 33 1 3.7715 3.2598 0.5305 34 1 5.2969 2.3427 0.5273 35 1 5.9025 -0.0299 2.0069 36 1 7.8692 -1.4795 -0.6306 37 1 9.3879 -1.5110 0.2971 38 1 8.2133 -2.7982 2.0996 39 1 6.7543 -2.8384 1.0807 40 1 8.1098 -4.7809 0.7717 41 1 8.7887 -1.1321 2.9814 42 1 7.9000 0.4271 3.2559 43 1 11.6469 2.6504 -0.3322 44 1 8.0861 1.8941 1.1359 45 1 9.0606 1.0114 -0.1160 46 1 4.3293 -2.8664 1.0282 47 1 3.5385 -3.2744 -0.5133 48 1 5.1202 -2.4581 -0.5133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717506908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:51 Heat of formation + Delta-G solvation = -27.261079 kcal Electronic energy + Delta-G solvation = -29858.775250 eV Core-core repulsion = 25914.283960 eV Total energy + Delta-G solvation = -3944.491290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10834 -41.08438 -39.33310 -37.69581 -35.38219 -35.23187 -34.75416 -33.72483 -31.90971 -30.14741 -29.21028 -28.81749 -28.18837 -26.71072 -25.27050 -23.68585 -23.34555 -22.24721 -21.47539 -20.28430 -18.84288 -18.75797 -18.37043 -18.06719 -17.27228 -16.83397 -16.39168 -16.05412 -15.80266 -15.74331 -15.53130 -15.26295 -14.94888 -14.59822 -14.48756 -14.32676 -14.10303 -13.94680 -13.80661 -13.68745 -13.26803 -13.19544 -13.15791 -13.00852 -12.92986 -12.78499 -12.75291 -12.66835 -12.60685 -12.31825 -12.04174 -11.78393 -11.40646 -11.13549 -10.91805 -10.74741 -10.52703 -10.38098 -10.10380 -9.79882 -8.99335 -7.92634 -5.28791 -0.15237 0.15367 1.44043 1.47086 1.47383 1.55325 2.00127 2.47238 2.57675 3.09999 3.16700 3.29934 3.35032 3.49537 3.60242 3.65429 3.75382 4.07360 4.12944 4.26183 4.29499 4.33700 4.36515 4.44752 4.50416 4.54429 4.57383 4.59334 4.62150 4.69723 4.71632 4.84555 4.89269 4.94148 4.97739 5.08753 5.12814 5.15397 5.19636 5.21519 5.23207 5.27147 5.46989 5.65860 5.67355 5.86233 6.50230 6.84533 6.90929 6.96328 7.18512 7.56180 8.52597 9.24177 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.003353 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.322287 B = 8348.126019 C = 9502.062956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.140 3.860 3 C -0.176 4.176 4 C -0.007 4.007 5 C -0.124 4.124 6 C -0.205 4.205 7 C 0.579 3.421 8 O -0.565 6.565 9 N -0.690 5.690 10 C 0.149 3.851 11 C -0.094 4.094 12 C 0.091 3.909 13 O -0.593 6.593 14 C 0.127 3.873 15 N -0.628 5.628 16 C -0.226 4.226 17 H 0.095 0.905 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.982 3.018 21 H -0.287 1.287 22 H -0.297 1.297 23 H -0.262 1.262 24 C 0.157 3.843 25 C 0.165 3.835 26 C -0.109 4.109 27 N -0.505 5.505 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.173 0.827 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.415 0.585 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.397 0.603 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.247 0.753 44 H 0.016 0.984 45 H 0.027 0.973 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.484 -6.267 5.093 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.002 3.998 3 C -0.196 4.196 4 C -0.015 4.015 5 C -0.180 4.180 6 C -0.210 4.210 7 C 0.365 3.635 8 O -0.443 6.443 9 N -0.342 5.342 10 C 0.062 3.938 11 C -0.132 4.132 12 C 0.014 3.986 13 O -0.401 6.401 14 C 0.001 3.999 15 N -0.354 5.354 16 C -0.354 4.354 17 H 0.112 0.888 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.810 3.190 21 H -0.214 1.214 22 H -0.223 1.223 23 H -0.186 1.186 24 C 0.030 3.970 25 C 0.027 3.973 26 C -0.166 4.166 27 N -0.216 5.216 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.252 0.748 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.247 0.753 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.034 0.966 45 H 0.046 0.954 46 H 0.120 0.880 47 H 0.110 0.890 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -22.922 -6.489 3.962 24.150 hybrid contribution 1.531 1.110 0.295 1.914 sum -21.391 -5.379 4.257 22.464 Atomic orbital electron populations 1.20856 0.85836 1.04669 1.04485 1.22075 0.98857 0.87734 0.91095 1.22081 0.92696 1.00851 1.03953 1.20564 0.94873 0.94050 0.92003 1.20950 0.99636 0.93917 1.03506 1.20628 0.93048 0.95892 1.11441 1.18265 0.86840 0.74764 0.83677 1.90809 1.70130 1.50351 1.32989 1.45789 1.06747 1.72924 1.08725 1.22006 0.78318 0.95318 0.98163 1.21172 1.00495 0.92111 0.99454 1.22040 0.97423 0.84408 0.94712 1.86478 1.78267 1.17576 1.57817 1.22821 0.87926 0.96626 0.92486 1.45488 1.03901 1.57985 1.28056 1.19318 0.82825 1.25600 1.07633 0.88765 1.25728 1.02787 1.00249 0.97423 1.70070 1.36412 1.37870 1.15789 0.85031 0.79274 0.76509 0.78225 1.21433 1.22322 1.18608 1.22275 0.87972 0.92914 0.93824 1.21421 0.89244 0.94739 0.91889 1.20857 0.99337 0.91956 1.04441 1.67447 1.08372 1.30257 1.15546 0.88607 0.88253 0.90559 0.80961 0.90447 0.87332 0.92708 0.74790 0.91828 0.93262 0.92192 0.92018 0.75303 0.91187 0.91791 0.94415 0.96618 0.95436 0.87963 0.89043 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.16 71.24 0.72 -0.32 16 2 C 0.14 2.57 6.78 42.57 0.29 2.86 16 3 C -0.18 -3.07 9.43 22.33 0.21 -2.86 16 4 C -0.01 -0.16 5.95 -19.40 -0.12 -0.27 16 5 C -0.12 -2.72 9.69 71.24 0.69 -2.03 16 6 C -0.20 -5.58 5.65 -19.99 -0.11 -5.70 16 7 C 0.58 19.07 4.07 86.79 0.35 19.43 16 8 O -0.56 -24.37 15.10 -3.87 -0.06 -24.43 16 9 N -0.69 -20.52 5.23 -425.19 -2.22 -22.74 16 10 C 0.15 5.64 0.77 4.08 0.00 5.65 16 11 C -0.09 -3.74 4.88 30.60 0.15 -3.59 16 12 C 0.09 2.65 6.88 71.98 0.50 3.15 16 13 O -0.59 -17.28 13.66 -148.98 -2.03 -19.32 16 14 C 0.13 4.72 7.81 83.18 0.65 5.37 16 15 N -0.63 -32.07 3.56 -738.42 -2.63 -34.70 16 16 C -0.23 -12.63 10.75 84.03 0.90 -11.73 16 17 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 19 N -0.95 -59.98 11.51 21.65 0.25 -59.73 16 20 Si 0.98 46.48 29.55 68.60 2.03 48.51 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 C 0.16 7.91 6.78 83.18 0.56 8.47 16 25 C 0.17 4.15 6.82 42.89 0.29 4.44 16 26 C -0.11 -2.37 9.49 71.24 0.68 -1.69 16 27 N -0.50 -11.76 10.17 -171.06 -1.74 -13.50 16 28 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.58 8.07 -2.39 -0.02 0.56 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 1.63 8.10 -2.39 -0.02 1.61 16 34 H 0.05 1.46 7.19 -2.39 -0.02 1.44 16 35 H 0.41 9.39 8.67 -92.71 -0.80 8.59 16 36 H 0.06 2.84 5.99 -2.39 -0.01 2.83 16 37 H 0.05 2.38 7.93 -2.39 -0.02 2.36 16 38 H 0.06 1.56 6.65 -2.39 -0.02 1.55 16 39 H 0.06 1.49 7.52 -2.39 -0.02 1.47 16 40 H 0.40 6.69 9.12 -74.06 -0.68 6.02 16 41 H 0.07 2.34 6.70 -2.39 -0.02 2.32 16 42 H 0.06 2.08 8.14 -2.38 -0.02 2.07 16 43 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.03 1.65 7.09 -2.39 -0.02 1.64 16 46 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 48 H 0.06 1.58 6.78 -2.39 -0.02 1.56 16 Total: -1.00 -81.98 392.52 -0.65 -82.64 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.48 Total: 25.62 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 6.24 Total: 17.65 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -6.34 Total: -130.67 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -2.09 Total: -43.75 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -81.98 -0.65 -82.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717506908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.378 kcal (2) G-P(sol) polarization free energy of solvation -81.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds