Wall clock time and date at job start Tue Mar 31 2020 17:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46555 * 2 1 4 4 N 1.46502 * 109.46845 * 60.02339 * 3 2 1 5 5 C 1.34782 * 119.99743 * 180.02562 * 4 3 2 6 6 O 1.21606 * 119.99756 * 0.02562 * 5 4 3 7 7 C 1.47418 * 119.99851 * 180.27926 * 5 4 3 8 8 N 1.36069 * 126.44640 * 359.40967 * 7 5 4 9 9 C 1.29937 * 108.47204 * 179.82656 * 8 7 5 10 10 O 1.34054 * 109.24238 * 0.44712 * 9 8 7 11 11 C 1.34252 * 108.22715 * 359.71892 * 10 9 8 12 12 C 1.50699 * 126.52182 * 179.97438 * 11 10 9 13 13 C 1.52997 * 117.50066 * 8.79006 * 12 11 10 14 14 C 1.52999 * 117.50099 * 300.12954 * 12 11 10 15 15 C 1.53044 * 109.44453 * 119.96645 * 2 1 3 16 16 C 1.53187 * 109.31674 * 58.64781 * 15 2 1 17 17 N 1.46928 * 108.77767 * 54.63043 * 16 15 2 18 18 C 1.36941 * 120.63276 * 126.41476 * 17 16 15 19 19 H 1.08004 * 119.99967 * 207.66468 * 18 17 16 20 20 C 1.38811 * 119.99535 * 27.65947 * 18 17 16 21 21 N 1.31614 * 120.00452 * 17.37746 * 20 18 17 22 22 Si 1.86806 * 119.99576 * 197.38100 * 20 18 17 23 23 H 1.48497 * 109.47124 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47384 * 120.00353 * 22 20 18 25 25 H 1.48502 * 109.46561 * 240.00039 * 22 20 18 26 26 C 1.46927 * 118.73824 * 306.39674 * 17 16 15 27 27 C 1.53046 * 109.45948 * 240.02354 * 2 1 3 28 28 H 1.08997 * 109.46607 * 59.99902 * 1 2 3 29 29 H 1.08993 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46820 * 300.00034 * 1 2 3 31 31 H 1.08996 * 109.46559 * 300.02835 * 3 2 1 32 32 H 1.08989 * 109.47457 * 180.02562 * 3 2 1 33 33 H 0.96999 * 120.00339 * 0.02562 * 4 3 2 34 34 H 1.08000 * 125.38062 * 180.20169 * 9 8 7 35 35 H 1.08998 * 115.55119 * 154.46012 * 12 11 10 36 36 H 1.08999 * 117.50055 * 0.02562 * 13 12 11 37 37 H 1.09008 * 117.49975 * 145.02077 * 13 12 11 38 38 H 1.09000 * 117.50407 * 214.97950 * 14 12 11 39 39 H 1.09003 * 117.49582 * 359.97438 * 14 12 11 40 40 H 1.09009 * 109.49300 * 178.59650 * 15 2 1 41 41 H 1.09000 * 109.49803 * 298.69304 * 15 2 1 42 42 H 1.09006 * 109.58597 * 294.84833 * 16 15 2 43 43 H 1.08999 * 109.58999 * 174.42031 * 16 15 2 44 44 H 0.96999 * 120.00341 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58852 * 293.81666 * 26 17 16 46 46 H 1.09001 * 109.70221 * 173.46373 * 26 17 16 47 47 H 1.08991 * 109.49148 * 61.31311 * 27 2 1 48 48 H 1.08997 * 109.49525 * 181.41217 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5519 2.1329 1.1965 5 6 1.8770 3.4234 1.4096 6 8 2.5750 4.0148 0.6084 7 6 1.3911 4.1163 2.6166 8 7 0.6022 3.5864 3.5905 9 6 0.3893 4.4995 4.4900 10 8 1.0131 5.6297 4.1287 11 6 1.6421 5.4080 2.9635 12 6 2.4683 6.4009 2.1873 13 6 2.7878 7.7358 2.8633 14 6 1.7757 7.6812 1.7161 15 6 2.0395 -0.7208 1.2502 16 6 1.4989 -2.1541 1.2644 17 7 1.8618 -2.8090 0.0003 18 6 2.5251 -4.0071 0.0004 19 1 3.1668 -4.2691 -0.8279 20 6 2.3728 -4.8845 1.0651 21 7 1.3595 -4.7447 1.8934 22 14 3.6060 -6.2638 1.3224 23 1 4.6435 -6.2045 0.2616 24 1 4.2483 -6.1119 2.6527 25 1 2.9062 -7.5720 1.2572 26 6 1.4992 -2.1543 -1.2641 27 6 2.0399 -0.7210 -1.2500 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6760 1.9564 -0.8897 32 1 3.1298 1.4427 -0.0005 33 1 0.9948 1.6612 1.8353 34 1 -0.2007 4.3698 5.3853 35 1 3.2297 5.9717 1.5360 36 1 2.4007 7.8958 3.8696 37 1 3.7592 8.1850 2.6563 38 1 2.0817 8.0946 0.7551 39 1 0.7223 7.8052 1.9672 40 1 3.1293 -0.7432 1.2385 41 1 1.6954 -0.1934 2.1399 42 1 0.4139 -2.1344 1.3674 43 1 1.9373 -2.7018 2.0987 44 1 1.2529 -5.3581 2.6372 45 1 0.4143 -2.1346 -1.3674 46 1 1.9358 -2.7013 -2.0997 47 1 1.6960 -0.1937 -2.1397 48 1 3.1295 -0.7433 -1.2380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724302193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:18 Heat of formation + Delta-G solvation = 29.199590 kcal Electronic energy + Delta-G solvation = -29030.263498 eV Core-core repulsion = 25088.220526 eV Total energy + Delta-G solvation = -3942.042972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.71863 -39.78613 -38.39241 -37.54946 -35.08137 -35.00049 -33.05648 -30.93132 -30.51169 -29.88794 -27.17966 -26.90907 -24.74091 -23.98837 -23.49274 -22.79790 -22.26536 -21.24447 -20.62943 -20.41528 -18.48212 -17.90446 -17.10327 -16.76520 -16.37797 -15.96979 -15.76184 -15.17063 -15.13243 -14.81617 -14.22073 -13.98550 -13.81912 -13.71819 -13.41240 -13.39682 -12.80352 -12.66921 -12.56826 -12.03315 -11.99896 -11.59718 -11.44628 -11.38926 -11.25030 -11.23891 -11.15349 -10.82076 -10.74558 -10.67543 -10.51131 -10.19081 -10.14689 -10.05433 -9.77650 -9.47854 -9.37636 -9.14248 -8.83224 -8.42042 -6.62374 -5.76204 -3.17410 0.81323 1.84285 2.21482 3.14929 3.20745 3.38584 3.46710 3.47883 3.48878 3.81252 4.03114 4.40945 4.51112 4.52159 4.72872 4.80743 5.09474 5.19986 5.20896 5.24622 5.28860 5.31565 5.43675 5.48734 5.55601 5.66381 5.76473 5.81186 5.83372 5.88692 5.99094 6.14559 6.15475 6.18869 6.36003 6.46855 6.54096 6.60033 6.65473 6.73737 6.82258 6.92021 7.03451 7.15622 7.41061 7.61681 7.71115 7.82977 8.18975 8.48173 9.24745 9.88634 10.45242 11.32167 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002472 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.714336 B =11326.044475 C =11848.135111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C 0.129 3.871 4 N -0.702 5.702 5 C 0.599 3.401 6 O -0.541 6.541 7 C -0.066 4.066 8 N -0.459 5.459 9 C 0.175 3.825 10 O -0.200 6.200 11 C 0.070 3.930 12 C -0.084 4.084 13 C -0.170 4.170 14 C -0.157 4.157 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.592 5.592 18 C -0.249 4.249 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.146 3.854 27 C -0.119 4.119 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.256 0.744 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.021 0.979 43 H 0.085 0.915 44 H 0.252 0.748 45 H 0.021 0.979 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 23.973 3.288 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C 0.006 3.994 4 N -0.353 5.353 5 C 0.384 3.616 6 O -0.419 6.419 7 C -0.186 4.186 8 N -0.188 5.188 9 C -0.053 4.053 10 O -0.087 6.087 11 C 0.013 3.987 12 C -0.102 4.102 13 C -0.207 4.207 14 C -0.194 4.194 15 C -0.169 4.169 16 C 0.046 3.954 17 N -0.314 5.314 18 C -0.379 4.379 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.019 3.981 27 C -0.159 4.159 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.248 0.752 34 H 0.272 0.728 35 H 0.174 0.826 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.735 23.626 2.853 23.861 hybrid contribution 0.379 -0.452 0.814 1.005 sum -1.356 23.175 3.668 23.502 Atomic orbital electron populations 1.21943 0.94663 1.03024 1.00337 1.20699 0.95840 0.91905 0.97989 1.21611 0.99094 0.92392 0.86293 1.45918 1.52496 1.10948 1.25926 1.16684 0.79958 0.81872 0.83117 1.90758 1.38766 1.66540 1.45842 1.21483 1.05154 0.92936 0.99018 1.70793 1.14304 1.31593 1.02114 1.28035 0.98257 0.78142 1.00902 1.84323 1.51567 1.39517 1.33282 1.22596 0.95704 0.95373 0.84978 1.20785 1.01284 0.86620 1.01494 1.23110 1.01242 0.98155 0.98147 1.23088 0.98663 0.97994 0.99685 1.22253 1.00585 0.99569 0.94540 1.20790 0.96532 0.87788 0.90301 1.44047 1.66823 1.21073 0.99491 1.19229 1.19149 0.93441 1.06068 0.91720 1.25015 0.97170 0.97553 1.00017 1.70038 1.27961 1.38767 1.17977 0.86260 0.81113 0.81885 0.77755 1.20298 1.21626 1.21801 1.20906 0.96415 0.90614 0.90116 1.21994 1.00746 0.98176 0.94987 0.93445 0.90699 0.93559 0.91682 0.91462 0.75228 0.72803 0.82610 0.88112 0.87455 0.87237 0.88440 0.92587 0.93534 0.96069 0.89645 0.93764 0.96160 0.92929 0.92931 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.54 37.16 0.28 -1.93 16 2 C -0.06 -1.03 0.53 -154.46 -0.08 -1.11 16 3 C 0.13 1.93 4.56 -4.04 -0.02 1.91 16 4 N -0.70 -10.24 4.94 -61.39 -0.30 -10.54 16 5 C 0.60 9.05 7.81 -12.52 -0.10 8.95 16 6 O -0.54 -9.00 14.88 5.27 0.08 -8.92 16 7 C -0.07 -0.89 6.99 -83.02 -0.58 -1.47 16 8 N -0.46 -5.62 11.06 -11.48 -0.13 -5.74 16 9 C 0.18 1.50 13.19 51.96 0.69 2.18 16 10 O -0.20 -1.94 10.50 6.51 0.07 -1.87 16 11 C 0.07 0.80 6.90 -35.08 -0.24 0.56 16 12 C -0.08 -0.82 5.61 -91.77 -0.51 -1.34 16 13 C -0.17 -1.19 10.18 -26.70 -0.27 -1.46 16 14 C -0.16 -1.18 10.24 -26.70 -0.27 -1.46 16 15 C -0.13 -2.44 4.75 -26.61 -0.13 -2.56 16 16 C 0.17 4.00 4.84 -3.71 -0.02 3.98 16 17 N -0.59 -14.57 3.00 -172.32 -0.52 -15.08 16 18 C -0.25 -6.81 9.59 -15.06 -0.14 -6.96 16 19 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 16 21 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 22 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 C 0.15 2.99 6.04 -3.71 -0.02 2.97 16 27 C -0.12 -2.02 4.91 -26.61 -0.13 -2.16 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.34 4.98 -51.93 -0.26 1.08 16 30 H 0.05 0.67 6.86 -51.93 -0.36 0.31 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.05 8.14 -51.94 -0.42 0.63 16 33 H 0.41 5.89 5.88 -40.82 -0.24 5.65 16 34 H 0.26 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.16 1.72 6.66 -51.93 -0.35 1.37 16 36 H 0.10 0.68 8.01 -51.93 -0.42 0.26 16 37 H 0.11 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.05 0.80 6.82 -51.93 -0.35 0.45 16 42 H 0.02 0.52 6.69 -51.93 -0.35 0.17 16 43 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.02 0.42 6.69 -51.93 -0.35 0.07 16 46 H 0.05 1.07 7.94 -51.93 -0.41 0.66 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -32.12 379.16 -8.30 -40.42 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.17 Total: 4.72 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.64 Total: 0.05 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.33 Total: -56.86 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.15 Total: -10.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.12 -8.30 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724302193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.620 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds