Wall clock time and date at job start Tue Mar 31 2020 17:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46555 * 2 1 4 4 N 1.46502 * 109.46845 * 60.02339 * 3 2 1 5 5 C 1.34782 * 119.99743 * 180.02562 * 4 3 2 6 6 O 1.21606 * 119.99756 * 0.02562 * 5 4 3 7 7 C 1.47418 * 119.99851 * 180.27926 * 5 4 3 8 8 N 1.36069 * 126.44640 * 359.40967 * 7 5 4 9 9 C 1.29937 * 108.47204 * 179.82656 * 8 7 5 10 10 O 1.34054 * 109.24238 * 0.44712 * 9 8 7 11 11 C 1.34252 * 108.22715 * 359.71892 * 10 9 8 12 12 C 1.50699 * 126.52182 * 179.97438 * 11 10 9 13 13 C 1.52997 * 117.50066 * 8.79006 * 12 11 10 14 14 C 1.52999 * 117.50099 * 300.12954 * 12 11 10 15 15 C 1.53044 * 109.44453 * 119.96645 * 2 1 3 16 16 C 1.53187 * 109.31674 * 58.64781 * 15 2 1 17 17 N 1.46928 * 108.77767 * 54.63043 * 16 15 2 18 18 C 1.36941 * 120.63276 * 126.41476 * 17 16 15 19 19 H 1.08004 * 119.99967 * 207.66468 * 18 17 16 20 20 C 1.38811 * 119.99535 * 27.65947 * 18 17 16 21 21 N 1.31614 * 120.00452 * 17.37746 * 20 18 17 22 22 Si 1.86806 * 119.99576 * 197.38100 * 20 18 17 23 23 H 1.48497 * 109.47124 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47384 * 120.00353 * 22 20 18 25 25 H 1.48502 * 109.46561 * 240.00039 * 22 20 18 26 26 C 1.46927 * 118.73824 * 306.39674 * 17 16 15 27 27 C 1.53046 * 109.45948 * 240.02354 * 2 1 3 28 28 H 1.08997 * 109.46607 * 59.99902 * 1 2 3 29 29 H 1.08993 * 109.47493 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46820 * 300.00034 * 1 2 3 31 31 H 1.08996 * 109.46559 * 300.02835 * 3 2 1 32 32 H 1.08989 * 109.47457 * 180.02562 * 3 2 1 33 33 H 0.96999 * 120.00339 * 0.02562 * 4 3 2 34 34 H 1.08000 * 125.38062 * 180.20169 * 9 8 7 35 35 H 1.08998 * 115.55119 * 154.46012 * 12 11 10 36 36 H 1.08999 * 117.50055 * 0.02562 * 13 12 11 37 37 H 1.09008 * 117.49975 * 145.02077 * 13 12 11 38 38 H 1.09000 * 117.50407 * 214.97950 * 14 12 11 39 39 H 1.09003 * 117.49582 * 359.97438 * 14 12 11 40 40 H 1.09009 * 109.49300 * 178.59650 * 15 2 1 41 41 H 1.09000 * 109.49803 * 298.69304 * 15 2 1 42 42 H 1.09006 * 109.58597 * 294.84833 * 16 15 2 43 43 H 1.08999 * 109.58999 * 174.42031 * 16 15 2 44 44 H 0.96999 * 120.00341 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.58852 * 293.81666 * 26 17 16 46 46 H 1.09001 * 109.70221 * 173.46373 * 26 17 16 47 47 H 1.08991 * 109.49148 * 61.31311 * 27 2 1 48 48 H 1.08997 * 109.49525 * 181.41217 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5519 2.1329 1.1965 5 6 1.8770 3.4234 1.4096 6 8 2.5750 4.0148 0.6084 7 6 1.3911 4.1163 2.6166 8 7 0.6022 3.5864 3.5905 9 6 0.3893 4.4995 4.4900 10 8 1.0131 5.6297 4.1287 11 6 1.6421 5.4080 2.9635 12 6 2.4683 6.4009 2.1873 13 6 2.7878 7.7358 2.8633 14 6 1.7757 7.6812 1.7161 15 6 2.0395 -0.7208 1.2502 16 6 1.4989 -2.1541 1.2644 17 7 1.8618 -2.8090 0.0003 18 6 2.5251 -4.0071 0.0004 19 1 3.1668 -4.2691 -0.8279 20 6 2.3728 -4.8845 1.0651 21 7 1.3595 -4.7447 1.8934 22 14 3.6060 -6.2638 1.3224 23 1 4.6435 -6.2045 0.2616 24 1 4.2483 -6.1119 2.6527 25 1 2.9062 -7.5720 1.2572 26 6 1.4992 -2.1543 -1.2641 27 6 2.0399 -0.7210 -1.2500 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6760 1.9564 -0.8897 32 1 3.1298 1.4427 -0.0005 33 1 0.9948 1.6612 1.8353 34 1 -0.2007 4.3698 5.3853 35 1 3.2297 5.9717 1.5360 36 1 2.4007 7.8958 3.8696 37 1 3.7592 8.1850 2.6563 38 1 2.0817 8.0946 0.7551 39 1 0.7223 7.8052 1.9672 40 1 3.1293 -0.7432 1.2385 41 1 1.6954 -0.1934 2.1399 42 1 0.4139 -2.1344 1.3674 43 1 1.9373 -2.7018 2.0987 44 1 1.2529 -5.3581 2.6372 45 1 0.4143 -2.1346 -1.3674 46 1 1.9358 -2.7013 -2.0997 47 1 1.6960 -0.1937 -2.1397 48 1 3.1295 -0.7433 -1.2380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724302193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:16 Heat of formation + Delta-G solvation = 7.463494 kcal Electronic energy + Delta-G solvation = -29031.206045 eV Core-core repulsion = 25088.220526 eV Total energy + Delta-G solvation = -3942.985520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -44.50034 -41.04391 -39.79288 -38.19280 -36.60896 -35.89179 -34.62525 -32.68122 -31.58992 -31.37650 -28.79336 -28.15395 -26.21776 -24.95120 -24.61417 -23.87975 -23.35154 -22.53107 -21.81031 -21.43379 -19.71169 -19.31572 -18.20304 -17.89509 -17.53759 -17.03721 -16.83733 -16.52331 -16.33417 -15.89463 -15.71272 -15.49564 -15.04145 -15.00070 -14.96309 -14.66042 -14.42372 -14.05507 -13.48887 -13.36280 -13.17229 -12.97806 -12.69703 -12.58270 -12.52413 -12.44549 -12.33144 -12.24960 -12.07540 -11.97741 -11.89103 -11.80962 -11.63139 -11.47278 -11.20265 -11.06822 -11.01044 -10.49661 -10.19893 -9.76435 -8.63291 -7.85833 -5.29474 -0.03492 1.03113 1.44729 1.46853 1.47051 1.57139 2.11101 2.18954 2.51666 2.82550 3.09508 3.27909 3.31654 3.69504 3.71668 3.77437 3.85079 3.87501 3.94730 3.95302 4.12094 4.40559 4.43514 4.52104 4.59724 4.62071 4.68902 4.70522 4.75619 4.82882 4.83930 4.91657 4.95370 5.07106 5.08184 5.12080 5.15064 5.15943 5.25492 5.30768 5.38300 5.39841 5.48154 5.56346 5.67525 5.83757 6.27296 6.41334 6.56736 7.05964 7.17484 7.90175 8.41001 9.20192 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.002472 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.714336 B =11326.044475 C =11848.135111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.054 4.054 3 C 0.140 3.860 4 N -0.701 5.701 5 C 0.596 3.404 6 O -0.563 6.563 7 C -0.100 4.100 8 N -0.495 5.495 9 C 0.197 3.803 10 O -0.196 6.196 11 C 0.076 3.924 12 C -0.113 4.113 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.116 4.116 16 C 0.181 3.819 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.064 0.936 20 C -0.052 4.052 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.142 3.858 27 C -0.110 4.110 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.411 0.589 34 H 0.305 0.695 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.006 0.994 43 H 0.047 0.953 44 H 0.249 0.751 45 H 0.022 0.978 46 H 0.051 0.949 47 H 0.085 0.915 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 26.334 3.451 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C 0.017 3.983 4 N -0.352 5.352 5 C 0.382 3.618 6 O -0.443 6.443 7 C -0.218 4.218 8 N -0.224 5.224 9 C -0.031 4.031 10 O -0.083 6.083 11 C 0.019 3.981 12 C -0.132 4.132 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.155 4.155 16 C 0.055 3.945 17 N -0.333 5.333 18 C -0.389 4.389 19 H 0.082 0.918 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.193 1.193 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.149 4.149 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.249 0.751 34 H 0.320 0.680 35 H 0.156 0.844 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.024 0.976 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.810 25.996 2.988 26.230 hybrid contribution 0.350 -1.138 0.791 1.430 sum -1.459 24.858 3.779 25.186 Atomic orbital electron populations 1.21853 0.93795 1.01720 1.01874 1.20574 0.96357 0.92391 0.96154 1.21417 0.98604 0.91241 0.87033 1.45873 1.52536 1.10997 1.25794 1.16945 0.79499 0.81772 0.83543 1.90734 1.39760 1.66968 1.46826 1.21325 1.07186 0.93915 0.99391 1.70752 1.15530 1.33066 1.03015 1.29168 0.96340 0.76771 1.00840 1.84359 1.51511 1.39899 1.32511 1.22822 0.95087 0.95024 0.85182 1.20773 1.02030 0.87491 1.02861 1.23220 1.01908 0.95278 0.98241 1.23194 0.99002 0.95784 1.00609 1.22034 0.99579 0.97064 0.96834 1.20554 0.95336 0.89763 0.88809 1.44303 1.66953 1.20866 1.01190 1.19535 1.19072 0.94343 1.05965 0.91803 1.25738 0.98800 1.00050 1.00127 1.70181 1.29560 1.39770 1.18463 0.85276 0.79102 0.78987 0.77517 1.19251 1.21840 1.21901 1.21061 0.96622 0.92420 0.88243 1.21878 1.00288 0.96056 0.96725 0.91333 0.93281 0.92683 0.90537 0.92181 0.75129 0.68003 0.84398 0.87475 0.85826 0.86114 0.88154 0.93773 0.92204 0.97617 0.93489 0.94218 0.96008 0.93077 0.89631 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 7.54 71.98 0.54 -3.48 16 2 C -0.05 -1.70 0.53 -52.15 -0.03 -1.72 16 3 C 0.14 3.99 4.56 86.38 0.39 4.39 16 4 N -0.70 -19.94 4.94 -466.39 -2.31 -22.25 16 5 C 0.60 17.85 7.81 86.66 0.68 18.53 16 6 O -0.56 -18.72 14.88 -4.05 -0.06 -18.78 16 7 C -0.10 -2.63 6.99 40.40 0.28 -2.34 16 8 N -0.50 -11.48 11.06 -305.15 -3.37 -14.86 16 9 C 0.20 2.87 13.19 130.52 1.72 4.59 16 10 O -0.20 -3.36 10.50 0.39 0.00 -3.35 16 11 C 0.08 1.67 6.90 25.18 0.17 1.84 16 12 C -0.11 -2.12 5.61 -11.54 -0.06 -2.18 16 13 C -0.15 -1.77 10.18 30.62 0.31 -1.45 16 14 C -0.15 -1.96 10.24 30.62 0.31 -1.65 16 15 C -0.12 -4.37 4.75 30.67 0.15 -4.23 16 16 C 0.18 8.71 4.84 86.36 0.42 9.12 16 17 N -0.61 -30.59 3.00 -699.09 -2.09 -32.69 16 18 C -0.26 -14.40 9.59 84.03 0.81 -13.60 16 19 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 20 C -0.05 -2.94 4.91 84.86 0.42 -2.52 16 21 N -0.93 -55.70 11.19 21.65 0.24 -55.46 16 22 Si 0.96 45.62 29.59 68.60 2.03 47.65 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.14 5.77 6.04 86.36 0.52 6.30 16 27 C -0.11 -3.57 4.91 30.67 0.15 -3.42 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.73 4.98 -2.39 -0.01 1.72 16 30 H 0.05 1.53 6.86 -2.39 -0.02 1.51 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.41 11.54 5.88 -92.71 -0.55 10.99 16 34 H 0.31 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.14 3.08 6.66 -2.39 -0.02 3.06 16 36 H 0.11 1.14 8.01 -2.39 -0.02 1.13 16 37 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.06 2.08 6.82 -2.39 -0.02 2.06 16 42 H 0.01 0.29 6.69 -2.38 -0.02 0.28 16 43 H 0.05 2.61 6.04 -2.39 -0.01 2.60 16 44 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.02 0.89 6.69 -2.39 -0.02 0.88 16 46 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16 47 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -71.91 379.16 1.66 -70.25 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.44 Total: 21.32 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 6.78 Total: 8.18 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -7.53 Total: -125.25 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.06 Total: -22.14 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.91 1.66 -70.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724302193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.710 kcal (2) G-P(sol) polarization free energy of solvation -71.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds