Wall clock time and date at job start Tue Mar 31 2020 17:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35666 * 116.99936 * 2 1 4 4 C 1.39289 * 119.61336 * 179.97438 * 3 2 1 5 5 C 1.38331 * 119.30137 * 179.97438 * 4 3 2 6 6 C 1.38780 * 118.56471 * 359.97438 * 5 4 3 7 7 C 1.39134 * 119.18386 * 0.02562 * 6 5 4 8 8 C 1.48152 * 119.68713 * 179.97438 * 7 6 5 9 9 O 1.21517 * 120.00148 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99795 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00053 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47060 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.45879 * 60.03234 * 12 11 10 14 14 C 1.53041 * 109.46689 * 300.06878 * 12 11 10 15 15 C 1.53190 * 109.31778 * 178.61579 * 14 12 11 16 16 N 1.46921 * 108.77327 * 54.63251 * 15 14 12 17 17 C 1.36942 * 120.62998 * 126.42127 * 16 15 14 18 18 H 1.07999 * 119.99705 * 207.66136 * 17 16 15 19 19 C 1.38807 * 119.99934 * 27.65052 * 17 16 15 20 20 N 1.31621 * 120.00124 * 17.38150 * 19 17 16 21 21 Si 1.86797 * 120.00011 * 197.38347 * 19 17 16 22 22 H 1.48503 * 109.47269 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47346 * 120.00138 * 21 19 17 24 24 H 1.48500 * 109.47109 * 240.00106 * 21 19 17 25 25 C 1.46925 * 118.74380 * 306.39235 * 16 15 14 26 26 C 1.53042 * 109.45931 * 179.97438 * 12 11 10 27 27 N 1.31897 * 119.61968 * 0.25100 * 3 2 1 28 28 H 1.08998 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47274 * 300.00523 * 1 2 3 30 30 H 1.09007 * 109.46839 * 60.00325 * 1 2 3 31 31 H 1.07994 * 120.35168 * 0.02562 * 4 3 2 32 32 H 1.08008 * 120.71773 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.41136 * 180.02562 * 6 5 4 34 34 H 0.97008 * 120.00122 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.46837 * 59.99595 * 11 10 8 36 36 H 1.08992 * 109.47112 * 299.99359 * 11 10 8 37 37 H 1.08992 * 109.47654 * 59.99734 * 13 12 11 38 38 H 1.08999 * 109.46938 * 179.97438 * 13 12 11 39 39 H 1.09000 * 109.46808 * 299.99134 * 13 12 11 40 40 H 1.09000 * 109.49494 * 298.56608 * 14 12 11 41 41 H 1.09003 * 109.49164 * 58.65972 * 14 12 11 42 42 H 1.09004 * 109.58010 * 294.84895 * 15 14 12 43 43 H 1.08991 * 109.58487 * 174.42266 * 15 14 12 44 44 H 0.97004 * 120.00074 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.58682 * 293.82353 * 25 16 15 46 46 H 1.08998 * 109.71043 * 173.46651 * 25 16 15 47 47 H 1.08995 * 109.50215 * 301.34058 * 26 12 11 48 48 H 1.09007 * 109.49395 * 61.44022 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4363 1.2723 0.0005 5 6 4.0576 2.5083 0.0000 6 6 3.2666 3.6486 -0.0016 7 6 1.8818 3.5137 -0.0021 8 6 1.0268 4.7235 -0.0032 9 8 1.5354 5.8271 -0.0033 10 7 -0.3153 4.6001 -0.0032 11 6 -1.1609 5.7965 -0.0038 12 6 -2.6332 5.3803 -0.0042 13 6 -2.9282 4.5485 1.2456 14 6 -2.9269 4.5456 -1.2529 15 6 -4.3930 4.1018 -1.2325 16 7 -5.2447 5.2901 -1.0869 17 6 -6.2580 5.5352 -1.9748 18 1 -6.5791 6.5494 -2.1611 19 6 -6.8722 4.4803 -2.6356 20 7 -6.7391 3.2522 -2.1811 21 14 -7.8876 4.8034 -4.1698 22 1 -7.8812 6.2577 -4.4704 23 1 -7.3054 4.0581 -5.3148 24 1 -9.2839 4.3513 -3.9436 25 6 -4.9891 6.2101 0.0298 26 6 -3.5163 6.6302 -0.0042 27 7 1.3192 2.3102 0.0050 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 4.0240 0.3663 0.0005 32 1 5.1350 2.5842 0.0008 33 1 3.7203 4.6286 -0.0025 34 1 -0.7214 3.7191 -0.0028 35 1 -0.9510 6.3893 -0.8940 36 1 -0.9511 6.3901 0.8859 37 1 -2.7187 5.1424 2.1352 38 1 -3.9771 4.2523 1.2457 39 1 -2.2990 3.6584 1.2464 40 1 -2.7408 5.1457 -2.1436 41 1 -2.2811 3.6676 -1.2636 42 1 -4.5590 3.4280 -0.3919 43 1 -4.6334 3.5920 -2.1653 44 1 -7.1686 2.5150 -2.6426 45 1 -5.2039 5.7081 0.9732 46 1 -5.6229 7.0915 -0.0676 47 1 -3.2901 7.2356 0.8735 48 1 -3.3248 7.2110 -0.9065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724303459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:24 Heat of formation + Delta-G solvation = -17.769504 kcal Electronic energy + Delta-G solvation = -29303.573734 eV Core-core repulsion = 25359.494029 eV Total energy + Delta-G solvation = -3944.079705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.10555 -39.74851 -38.58961 -37.75054 -35.11204 -33.44094 -32.66954 -31.18593 -30.78622 -29.92775 -27.70188 -27.12023 -26.85064 -24.81068 -23.69765 -23.14461 -22.32718 -21.05132 -20.53166 -18.85069 -18.03385 -17.86928 -16.52398 -16.33595 -16.31945 -16.11419 -15.73910 -15.31622 -14.86675 -14.46682 -14.34259 -14.10987 -13.90513 -13.67539 -13.53774 -13.45128 -13.22526 -12.81082 -12.62548 -12.53194 -12.01305 -11.99719 -11.47885 -11.40667 -11.28265 -11.18723 -10.77972 -10.70396 -10.65205 -10.52263 -10.32194 -10.19931 -10.17270 -9.83436 -9.80616 -9.50525 -9.41189 -9.03532 -8.80185 -8.44943 -6.65452 -5.79222 -3.20324 0.37652 0.93530 2.62204 2.77302 3.07150 3.36605 3.44947 3.47060 3.61599 3.82650 4.49738 4.54333 4.67660 4.68272 4.94639 5.04708 5.10906 5.15803 5.16983 5.18014 5.24543 5.40735 5.50546 5.52133 5.59275 5.77632 5.78027 5.84561 5.94310 5.98841 6.10463 6.10913 6.14800 6.32082 6.42305 6.49406 6.55439 6.61361 6.69993 6.78409 6.87881 6.87986 7.00130 7.27298 7.37118 7.59694 7.66743 7.80271 8.13913 8.45178 9.21877 9.85630 10.42066 11.29155 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014748 B = 0.002954 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.043428 B = 9475.910251 C =10572.376902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.307 6.307 3 C 0.322 3.678 4 C -0.169 4.169 5 C -0.048 4.048 6 C -0.150 4.150 7 C 0.123 3.877 8 C 0.565 3.435 9 O -0.536 6.536 10 N -0.699 5.699 11 C 0.127 3.873 12 C -0.064 4.064 13 C -0.142 4.142 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.146 3.854 26 C -0.120 4.120 27 N -0.516 5.516 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.021 0.979 43 H 0.085 0.915 44 H 0.252 0.748 45 H 0.021 0.979 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.676 -4.305 6.589 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.214 6.214 3 C 0.141 3.859 4 C -0.190 4.190 5 C -0.073 4.073 6 C -0.172 4.172 7 C -0.014 4.014 8 C 0.349 3.651 9 O -0.413 6.413 10 N -0.350 5.350 11 C 0.004 3.996 12 C -0.064 4.064 13 C -0.199 4.199 14 C -0.169 4.169 15 C 0.046 3.954 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.020 3.980 26 C -0.159 4.159 27 N -0.243 5.243 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.249 0.751 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.076 -3.960 6.527 20.547 hybrid contribution -0.082 -0.299 -0.838 0.893 sum 18.994 -4.259 5.689 20.280 Atomic orbital electron populations 1.22972 0.76395 1.03536 1.03027 1.86245 1.23507 1.23943 1.87661 1.19787 0.89417 0.84496 0.92248 1.21301 0.92008 0.99913 1.05816 1.21450 1.00907 0.90808 0.94168 1.21994 0.93037 1.00876 1.01270 1.20865 0.92269 0.90248 0.98012 1.17855 0.82530 0.87267 0.77404 1.90782 1.74085 1.25834 1.50613 1.45985 1.05253 1.11511 1.72238 1.21643 0.89733 0.86364 1.01905 1.20700 0.91684 0.97203 0.96846 1.21943 1.03033 0.98790 0.96173 1.22256 1.00862 0.97994 0.95835 1.20781 0.84567 0.88496 1.01512 1.44042 1.34367 1.25025 1.27985 1.19232 1.10374 0.92091 1.16216 0.91708 1.25009 0.98456 0.95848 1.00402 1.70041 1.46812 0.98750 1.39151 0.86258 0.79612 0.77708 0.83412 1.20289 1.21620 1.21793 1.20906 0.92152 0.93875 0.91108 1.21999 0.97809 0.95394 1.00737 1.67171 1.41070 0.98244 1.17852 0.88235 0.91949 0.91737 0.83588 0.83307 0.83143 0.75118 0.91387 0.91608 0.93408 0.90687 0.93657 0.92549 0.93639 0.96115 0.89656 0.93784 0.96168 0.92907 0.92895 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.38 101.05 1.05 1.38 16 2 O -0.31 -3.27 10.48 -18.70 -0.20 -3.47 16 3 C 0.32 3.55 7.49 -17.13 -0.13 3.43 16 4 C -0.17 -1.43 10.05 -39.16 -0.39 -1.83 16 5 C -0.05 -0.36 10.16 -39.35 -0.40 -0.76 16 6 C -0.15 -1.53 9.63 -39.05 -0.38 -1.90 16 7 C 0.12 1.55 6.75 -83.02 -0.56 0.99 16 8 C 0.57 8.24 7.81 -12.19 -0.10 8.14 16 9 O -0.54 -9.03 16.32 5.35 0.09 -8.94 16 10 N -0.70 -9.77 4.94 -61.15 -0.30 -10.08 16 11 C 0.13 1.84 4.56 -4.04 -0.02 1.82 16 12 C -0.06 -1.00 0.53 -154.46 -0.08 -1.08 16 13 C -0.14 -2.12 7.54 37.16 0.28 -1.84 16 14 C -0.13 -2.36 4.75 -26.61 -0.13 -2.49 16 15 C 0.17 3.91 4.84 -3.71 -0.02 3.89 16 16 N -0.59 -14.32 3.00 -172.33 -0.52 -14.84 16 17 C -0.25 -6.74 9.59 -15.06 -0.14 -6.88 16 18 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 20 N -0.90 -25.69 11.19 55.49 0.62 -25.07 16 21 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.15 2.94 6.04 -3.71 -0.02 2.92 16 26 C -0.12 -1.99 4.91 -26.61 -0.13 -2.12 16 27 N -0.52 -6.34 8.39 -9.87 -0.08 -6.43 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.06 0.64 8.11 -51.92 -0.42 0.22 16 31 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 33 H 0.15 1.43 7.63 -52.49 -0.40 1.03 16 34 H 0.41 5.56 5.48 -40.82 -0.22 5.33 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.30 4.98 -51.93 -0.26 1.04 16 39 H 0.04 0.62 6.86 -51.93 -0.36 0.26 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.75 6.82 -51.93 -0.35 0.40 16 42 H 0.02 0.49 6.69 -51.93 -0.35 0.14 16 43 H 0.09 2.22 6.04 -51.93 -0.31 1.91 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 46 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -31.09 379.78 -8.16 -39.24 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.21 Total: 3.74 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -1.25 Total: 3.60 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.28 Total: -56.41 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.11 Total: -12.41 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.09 -8.16 -39.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724303459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.474 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds