Wall clock time and date at job start Tue Mar 31 2020 17:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38631 * 120.75068 * 2 1 4 4 C 1.38559 * 119.34715 * 180.26421 * 3 2 1 5 5 C 1.50702 * 119.54828 * 179.73109 * 4 3 2 6 6 N 1.31521 * 120.90403 * 359.45895 * 4 3 2 7 7 C 1.32715 * 121.64245 * 0.26973 * 6 4 3 8 8 C 1.48173 * 119.72371 * 180.02562 * 7 6 4 9 9 O 1.21519 * 120.00344 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99939 * 0.02562 * 8 7 6 11 11 C 1.46501 * 119.99936 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46962 * 176.56538 * 11 10 8 13 13 N 1.46496 * 109.54093 * 54.54653 * 12 11 10 14 14 C 1.36936 * 120.00438 * 62.02226 * 13 12 11 15 15 H 1.08001 * 119.99569 * 354.00695 * 14 13 12 16 16 C 1.38811 * 120.00337 * 174.01102 * 14 13 12 17 17 N 1.31613 * 119.99874 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00004 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47450 * 89.99277 * 18 16 14 20 20 H 1.48499 * 109.46994 * 209.99918 * 18 16 14 21 21 H 1.48504 * 109.46699 * 329.99375 * 18 16 14 22 22 C 1.53177 * 109.54304 * 294.36907 * 12 11 10 23 23 C 1.53103 * 109.15667 * 183.24448 * 22 12 11 24 24 O 1.42900 * 109.48774 * 57.47287 * 23 22 12 25 25 C 1.42902 * 114.09762 * 298.88684 * 24 23 22 26 26 C 1.53097 * 109.41402 * 61.16168 * 25 24 23 27 27 C 1.38583 * 120.75976 * 179.73111 * 2 1 3 28 28 H 1.09000 * 109.46929 * 270.27407 * 1 2 3 29 29 H 1.08999 * 109.48034 * 30.27046 * 1 2 3 30 30 H 1.08996 * 109.47137 * 150.27633 * 1 2 3 31 31 H 1.07995 * 120.32931 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47171 * 269.73109 * 5 4 3 33 33 H 1.08998 * 109.47117 * 29.72796 * 5 4 3 34 34 H 1.09001 * 109.47381 * 149.73178 * 5 4 3 35 35 H 0.97002 * 119.99667 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47145 * 296.56983 * 11 10 8 37 37 H 1.09005 * 109.46953 * 56.56762 * 11 10 8 38 38 H 0.97009 * 119.99586 * 242.01874 * 13 12 11 39 39 H 0.97000 * 120.00124 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.52498 * 303.06092 * 22 12 11 41 41 H 1.08997 * 109.52555 * 63.24612 * 22 12 11 42 42 H 1.08997 * 109.40153 * 297.48897 * 23 22 12 43 43 H 1.09003 * 109.49164 * 177.51037 * 23 22 12 44 44 H 1.08996 * 109.48313 * 301.17877 * 25 24 23 45 45 H 1.08999 * 109.48956 * 181.14751 * 25 24 23 46 46 H 1.08994 * 109.52564 * 182.48299 * 26 25 24 47 47 H 1.09005 * 109.57166 * 62.32056 * 26 25 24 48 48 H 1.08005 * 120.46555 * 359.97374 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1914 0.0000 4 6 3.6009 1.1575 -0.0056 5 6 4.3760 2.4499 -0.0117 6 7 4.2486 0.0128 -0.0002 7 6 3.6082 -1.1496 0.0054 8 6 4.3806 -2.4140 0.0119 9 8 3.7994 -3.4811 0.0166 10 7 5.7280 -2.3806 0.0127 11 6 6.4918 -3.6307 0.0197 12 6 7.9865 -3.3157 -0.0673 13 7 8.3557 -2.3907 1.0071 14 6 8.2090 -2.7674 2.3154 15 1 7.7322 -3.7059 2.5569 16 6 8.6731 -1.9430 3.3312 17 7 9.2546 -0.7996 3.0369 18 14 8.4737 -2.4572 5.1160 19 1 9.6636 -3.2363 5.5426 20 1 8.3422 -1.2479 5.9678 21 1 7.2564 -3.2962 5.2562 22 6 8.2971 -2.6756 -1.4238 23 6 9.8056 -2.4385 -1.5338 24 8 10.4966 -3.6778 -1.3644 25 6 10.2812 -4.2971 -0.0947 26 6 8.7921 -4.6110 0.0723 27 6 2.2157 -1.1909 0.0056 28 1 -0.3633 0.0049 1.0277 29 1 -0.3635 0.8875 -0.5180 30 1 -0.3633 -0.8924 -0.5095 31 1 1.6935 2.1367 0.0004 32 1 4.5628 2.7566 -1.0409 33 1 3.7996 3.2216 0.4984 34 1 5.3262 2.3062 0.5027 35 1 6.1920 -1.5287 0.0086 36 1 6.2883 -4.1756 0.9415 37 1 6.1986 -4.2404 -0.8350 38 1 8.7041 -1.5114 0.7916 39 1 9.5792 -0.2237 3.7467 40 1 7.9752 -3.3426 -2.2236 41 1 7.7705 -1.7249 -1.5072 42 1 10.1195 -1.7384 -0.7596 43 1 10.0381 -2.0238 -2.5148 44 1 10.6013 -3.6214 0.6984 45 1 10.8560 -5.2215 -0.0387 46 1 8.6191 -5.0431 1.0578 47 1 8.4797 -5.3187 -0.6957 48 1 1.6958 -2.1375 0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724362530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:25 Heat of formation + Delta-G solvation = -65.732989 kcal Electronic energy + Delta-G solvation = -29678.613072 eV Core-core repulsion = 25732.453515 eV Total energy + Delta-G solvation = -3946.159557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.76574 -40.86610 -39.84548 -37.33331 -35.43051 -34.95633 -34.03376 -33.50088 -31.99535 -30.96799 -29.05314 -28.67656 -28.16570 -26.01496 -25.36485 -24.38825 -23.24708 -22.24578 -21.33493 -20.18038 -19.17600 -18.74892 -17.73631 -17.19999 -16.98993 -16.85126 -16.57025 -16.47667 -16.32093 -15.90110 -15.57660 -15.43790 -15.23874 -14.95192 -14.51032 -14.18157 -14.13273 -13.77688 -13.71924 -13.67627 -13.40621 -13.18929 -13.09697 -13.04946 -12.91670 -12.86292 -12.70266 -12.58589 -12.25642 -12.11563 -11.77272 -11.52423 -11.32121 -11.15542 -10.99033 -10.53517 -10.51452 -10.33295 -10.14760 -9.86465 -8.98780 -7.91435 -5.18223 -0.37249 0.19619 1.42753 1.44892 1.50521 1.68189 2.15871 2.54792 2.80234 3.05724 3.08831 3.40808 3.64413 3.69811 3.73159 3.85263 3.96533 4.00771 4.02966 4.13578 4.22321 4.36896 4.45611 4.50893 4.58044 4.62548 4.70723 4.73866 4.75025 4.78596 4.80815 4.81847 4.87670 4.98387 5.00537 5.06844 5.13791 5.19828 5.25984 5.26778 5.27832 5.32465 5.48561 5.59685 5.68350 6.29558 6.35552 6.47119 6.85843 7.15392 7.38771 8.07315 8.34405 9.30708 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.003989 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.140054 B = 7017.827312 C = 8007.072079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.046 4.046 3 C -0.143 4.143 4 C 0.115 3.885 5 C -0.102 4.102 6 N -0.487 5.487 7 C 0.064 3.936 8 C 0.557 3.443 9 O -0.579 6.579 10 N -0.678 5.678 11 C 0.120 3.880 12 C 0.187 3.813 13 N -0.712 5.712 14 C -0.216 4.216 15 H 0.065 0.935 16 C -0.059 4.059 17 N -0.957 5.957 18 Si 0.949 3.051 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.283 1.283 22 C -0.143 4.143 23 C 0.067 3.933 24 O -0.395 6.395 25 C 0.076 3.924 26 C -0.148 4.148 27 C -0.134 4.134 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.412 0.588 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.376 0.624 39 H 0.248 0.752 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.112 0.888 44 H 0.035 0.965 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.240 5.072 -10.929 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.163 4.163 4 C -0.026 4.026 5 C -0.159 4.159 6 N -0.200 5.200 7 C -0.073 4.073 8 C 0.343 3.657 9 O -0.460 6.460 10 N -0.326 5.326 11 C -0.006 4.006 12 C 0.096 3.904 13 N -0.353 5.353 14 C -0.348 4.348 15 H 0.083 0.917 16 C -0.252 4.252 17 N -0.607 5.607 18 Si 0.781 3.219 19 H -0.215 1.215 20 H -0.227 1.227 21 H -0.209 1.209 22 C -0.181 4.181 23 C -0.010 4.010 24 O -0.315 6.315 25 C -0.001 4.001 26 C -0.188 4.188 27 C -0.155 4.155 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.197 0.803 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.250 0.750 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.210 0.790 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.130 0.870 44 H 0.053 0.947 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.589 4.098 -10.909 17.155 hybrid contribution -0.465 0.289 1.768 1.851 sum -13.053 4.388 -9.141 16.529 Atomic orbital electron populations 1.20913 0.86795 1.04918 1.04146 1.20748 0.98952 0.91511 0.94119 1.22479 0.93916 1.00338 0.99565 1.21923 0.92688 0.93752 0.94211 1.20825 0.99881 0.90911 1.04289 1.67375 1.42148 0.98256 1.12241 1.21000 0.92419 0.91613 1.02260 1.18324 0.82797 0.87938 0.76667 1.90690 1.70714 1.31283 1.53346 1.45663 1.05167 1.11124 1.70633 1.21826 0.92966 0.85449 1.00331 1.20019 0.90338 0.91194 0.88799 1.42491 1.76738 1.15280 1.00757 1.19197 1.29165 1.02539 0.83933 0.91723 1.25204 1.02075 0.97588 1.00342 1.69757 1.46685 1.12622 1.31669 0.85503 0.77401 0.76471 0.82535 1.21499 1.22659 1.20912 1.22299 0.97564 1.01948 0.96287 1.22543 0.90733 0.85694 1.02012 1.87793 1.70731 1.37133 1.35802 1.22373 0.95405 0.97489 0.84841 1.22410 0.96468 0.97807 1.02144 1.22094 0.93040 1.00743 0.99606 0.89295 0.88399 0.90369 0.80349 0.88718 0.87733 0.92092 0.75018 0.94121 0.91067 0.79005 0.94322 0.89279 0.90822 0.94537 0.86963 0.94672 0.88067 0.91903 0.90163 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.06 71.23 0.72 -0.57 16 2 C -0.05 -0.92 5.91 -19.69 -0.12 -1.04 16 3 C -0.14 -2.68 9.45 22.44 0.21 -2.47 16 4 C 0.11 2.86 6.78 42.68 0.29 3.15 16 5 C -0.10 -1.92 10.17 71.24 0.72 -1.20 16 6 N -0.49 -16.03 9.45 -173.09 -1.64 -17.67 16 7 C 0.06 2.21 6.75 41.91 0.28 2.49 16 8 C 0.56 22.06 7.81 86.88 0.68 22.74 16 9 O -0.58 -25.12 16.32 -3.77 -0.06 -25.19 16 10 N -0.68 -26.33 5.12 -465.63 -2.38 -28.71 16 11 C 0.12 4.57 4.36 86.38 0.38 4.95 16 12 C 0.19 6.87 0.41 3.72 0.00 6.87 16 13 N -0.71 -32.23 3.60 -302.81 -1.09 -33.32 16 14 C -0.22 -11.23 8.67 84.03 0.73 -10.50 16 15 H 0.06 3.39 6.78 -2.91 -0.02 3.37 16 16 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 17 N -0.96 -55.73 13.07 21.65 0.28 -55.45 16 18 Si 0.95 46.22 29.55 68.60 2.03 48.24 16 19 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 20 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 21 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 22 C -0.14 -4.43 4.80 30.69 0.15 -4.28 16 23 C 0.07 2.10 6.67 72.02 0.48 2.58 16 24 O -0.40 -13.49 10.77 -148.98 -1.60 -15.09 16 25 C 0.08 2.64 6.68 72.01 0.48 3.12 16 26 C -0.15 -5.13 4.79 30.69 0.15 -4.98 16 27 C -0.13 -3.75 9.34 22.61 0.21 -3.54 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 31 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.30 8.07 -2.39 -0.02 1.28 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 16.41 6.76 -92.71 -0.63 15.79 16 36 H 0.04 1.75 7.47 -2.39 -0.02 1.73 16 37 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 38 H 0.38 18.48 6.82 -92.70 -0.63 17.85 16 39 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.07 2.26 7.40 -2.39 -0.02 2.24 16 42 H 0.04 1.33 7.15 -2.39 -0.02 1.31 16 43 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.03 1.47 7.75 -2.39 -0.02 1.45 16 45 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.06 2.36 7.20 -2.39 -0.02 2.34 16 47 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 48 H 0.14 3.93 7.64 -2.91 -0.02 3.90 16 Total: -1.00 -68.93 388.10 1.08 -67.85 By element: Atomic # 1 Polarization: 45.08 SS G_CDS: -0.28 Total: 44.81 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.83 Total: 14.53 kcal Atomic # 7 Polarization: -130.32 SS G_CDS: -4.83 Total: -135.15 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.67 Total: -40.28 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -68.93 1.08 -67.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724362530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.117 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds