Wall clock time and date at job start Tue Mar 31 2020 17:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35918 * 117.00058 * 2 1 4 4 C 1.38847 * 120.40258 * 359.97438 * 3 2 1 5 5 N 1.31888 * 120.99459 * 179.72223 * 4 3 2 6 6 C 1.31681 * 121.94607 * 0.27837 * 5 4 3 7 7 C 1.39524 * 120.68721 * 0.02562 * 6 5 4 8 8 C 1.47855 * 120.52622 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99691 * 130.87645 * 8 7 6 10 10 N 1.34776 * 120.00535 * 310.87352 * 8 7 6 11 11 C 1.46502 * 119.99442 * 4.62388 * 10 8 7 12 12 C 1.46493 * 120.00233 * 184.62028 * 10 8 7 13 13 H 1.08996 * 109.47682 * 0.02562 * 12 10 8 14 14 C 1.53001 * 109.47134 * 240.00072 * 12 10 8 15 15 N 1.46490 * 109.47267 * 55.00256 * 14 12 10 16 16 C 1.36934 * 120.00204 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00411 * 359.97438 * 16 15 14 18 18 C 1.38817 * 120.00309 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99475 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00242 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47189 * 90.00292 * 20 18 16 22 22 H 1.48504 * 109.47381 * 209.99621 * 20 18 16 23 23 H 1.48496 * 109.47287 * 329.99843 * 20 18 16 24 24 C 1.53001 * 109.46967 * 120.00050 * 12 10 8 25 25 C 1.53004 * 117.50074 * 248.74503 * 24 12 10 26 26 C 1.53000 * 117.49940 * 180.08404 * 24 12 10 27 27 C 1.38850 * 120.40812 * 180.29794 * 3 2 1 28 28 C 1.50705 * 120.87756 * 359.97438 * 27 3 2 29 29 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46795 * 299.99650 * 1 2 3 31 31 H 1.08993 * 109.47182 * 60.00525 * 1 2 3 32 32 H 1.07991 * 119.50330 * 359.97438 * 4 3 2 33 33 H 1.07989 * 119.65333 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47275 * 84.75023 * 11 10 8 35 35 H 1.09004 * 109.46981 * 204.74344 * 11 10 8 36 36 H 1.08999 * 109.47288 * 324.74250 * 11 10 8 37 37 H 1.09004 * 109.46965 * 175.00043 * 14 12 10 38 38 H 1.09001 * 109.47366 * 294.99916 * 14 12 10 39 39 H 0.97001 * 120.00295 * 359.97438 * 15 14 12 40 40 H 0.97001 * 119.99688 * 179.97438 * 19 18 16 41 41 H 1.09004 * 115.55029 * 34.42070 * 24 12 10 42 42 H 1.08995 * 117.49511 * 0.02562 * 25 24 12 43 43 H 1.09005 * 117.49470 * 145.02023 * 25 24 12 44 44 H 1.09002 * 117.50007 * 214.98108 * 26 24 12 45 45 H 1.09004 * 117.49893 * 0.02562 * 26 24 12 46 46 H 1.08993 * 109.47318 * 274.74837 * 28 27 3 47 47 H 1.08999 * 109.46842 * 34.75195 * 28 27 3 48 48 H 1.08999 * 109.46449 * 154.74733 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3808 -0.0005 5 7 1.8846 3.5620 0.0049 6 6 3.1953 3.6891 0.0057 7 6 4.0198 2.5636 0.0001 8 6 5.4911 2.7104 0.0004 9 8 6.1644 2.0815 0.7933 10 7 6.0857 3.5415 -0.8783 11 6 5.2701 4.3751 -1.7650 12 6 7.5473 3.6114 -0.9468 13 1 7.9785 2.9249 -0.2181 14 6 8.0048 5.0381 -0.6369 15 7 7.4601 5.4554 0.6573 16 6 7.7379 6.7037 1.1468 17 1 8.3589 7.3806 0.5789 18 6 7.2214 7.0993 2.3730 19 7 6.4641 6.2746 3.0650 20 14 7.5998 8.8025 3.0403 21 1 6.5625 9.7580 2.5754 22 1 7.6059 8.7624 4.5248 23 1 8.9316 9.2410 2.5515 24 6 8.0113 3.2207 -2.3514 25 6 8.7682 1.8997 -2.5035 26 6 9.5164 3.2295 -2.6262 27 6 3.4321 1.2936 -0.0062 28 6 4.2810 0.0484 -0.0125 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2197 2.3225 -0.0014 33 1 3.6365 4.6748 0.0098 34 1 4.9871 5.2902 -1.2448 35 1 5.8443 4.6270 -2.6567 36 1 4.3722 3.8285 -2.0535 37 1 9.0937 5.0707 -0.6004 38 1 7.6472 5.7116 -1.4158 39 1 6.9026 4.8474 1.1677 40 1 6.1034 6.5509 3.9220 41 1 7.3495 3.5181 -3.1649 42 1 8.9352 1.3089 -1.6030 43 1 8.6045 1.3283 -3.4173 44 1 9.8447 3.5323 -3.6205 45 1 10.1761 3.5133 -1.8062 46 1 4.4201 -0.3017 1.0102 47 1 3.7853 -0.7263 -0.5975 48 1 5.2516 0.2727 -0.4550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725461402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:05 Heat of formation + Delta-G solvation = 14.229053 kcal Electronic energy + Delta-G solvation = -29814.765682 eV Core-core repulsion = 25872.073539 eV Total energy + Delta-G solvation = -3942.692143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06567 -39.70729 -38.17148 -37.37565 -35.21110 -34.03264 -33.74012 -31.47428 -30.50858 -28.32577 -27.88796 -27.63510 -26.57076 -24.43726 -23.54816 -22.47751 -22.30227 -21.54009 -20.38596 -19.08924 -18.03836 -17.52265 -17.11902 -16.53153 -16.38479 -16.13107 -15.98405 -14.99252 -14.78672 -14.63862 -14.33991 -13.94596 -13.77997 -13.53139 -13.25451 -13.05113 -12.95690 -12.84848 -12.82643 -12.43618 -12.28043 -12.14585 -11.88340 -11.73290 -11.60489 -11.51068 -11.44512 -11.06555 -10.79950 -10.71003 -10.35577 -10.11434 -10.02154 -9.80566 -9.62752 -9.41733 -9.18904 -8.83455 -8.49607 -8.27254 -6.86717 -5.69497 -2.99291 0.77181 1.20383 2.78976 3.01827 3.27701 3.46597 3.51528 3.53825 3.72669 3.92787 4.34208 4.45548 4.60016 4.67112 4.73322 4.78407 4.84585 4.86798 5.02386 5.05502 5.10774 5.16833 5.31930 5.34708 5.39780 5.53722 5.60631 5.67413 5.69945 5.71771 5.73498 5.79199 5.91340 5.98234 6.05907 6.08681 6.21130 6.22599 6.25149 6.32487 6.39651 6.49393 6.74250 6.96727 7.01122 7.63911 7.74072 7.87056 8.43179 8.47702 9.59265 10.17374 10.52690 11.52343 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.004206 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.816703 B = 6655.925095 C = 8698.863561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.063 3.937 4 C 0.033 3.967 5 N -0.454 5.454 6 C 0.108 3.892 7 C -0.135 4.135 8 C 0.571 3.429 9 O -0.521 6.521 10 N -0.586 5.586 11 C 0.076 3.924 12 C 0.163 3.837 13 H 0.102 0.898 14 C 0.149 3.851 15 N -0.728 5.728 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.011 4.011 19 N -0.928 5.928 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.160 4.160 25 C -0.179 4.179 26 C -0.169 4.169 27 C -0.027 4.027 28 C -0.105 4.105 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.159 0.841 33 H 0.172 0.828 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.022 0.978 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -13.008 -13.647 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.016 3.984 4 C -0.125 4.125 5 N -0.163 5.163 6 C -0.050 4.050 7 C -0.140 4.140 8 C 0.357 3.643 9 O -0.397 6.397 10 N -0.318 5.318 11 C -0.067 4.067 12 C 0.060 3.940 13 H 0.120 0.880 14 C 0.020 3.980 15 N -0.373 5.373 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.576 5.576 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.179 4.179 25 C -0.216 4.216 26 C -0.206 4.206 27 C -0.036 4.036 28 C -0.162 4.162 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.176 0.824 33 H 0.189 0.811 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.744 -12.642 -13.192 20.256 hybrid contribution 0.083 0.378 0.619 0.730 sum -8.662 -12.263 -12.574 19.583 Atomic orbital electron populations 1.23111 0.78185 1.04235 1.01566 1.86070 1.21362 1.25736 1.88848 1.19672 0.92178 0.85925 1.00631 1.23025 1.00516 0.87219 1.01717 1.67596 1.11979 1.25702 1.11024 1.23156 0.88202 0.98904 0.94785 1.20750 0.95155 0.93691 1.04393 1.17830 0.86288 0.79470 0.80673 1.90803 1.64678 1.46694 1.37512 1.47457 1.06590 1.40519 1.37198 1.21913 0.95024 0.95399 0.94362 1.20958 0.78785 0.99687 0.94563 0.88002 1.20929 0.96470 0.90812 0.89780 1.42304 1.60738 1.15981 1.18276 1.19182 1.25672 0.91143 1.01231 0.91295 1.24739 1.00443 0.98061 0.97519 1.69690 1.37998 1.35188 1.14696 0.86230 0.77740 0.84299 0.78140 1.21780 1.21845 1.20840 1.22555 0.95132 1.01796 0.98450 1.23022 1.04752 0.90763 1.03074 1.22929 0.93999 1.00768 1.02948 1.19648 0.90807 0.95436 0.97703 1.20674 0.98633 0.93334 1.03528 0.87977 0.92376 0.92473 0.82408 0.81117 0.91240 0.90789 0.91860 0.95311 0.96024 0.77937 0.93556 0.87633 0.88665 0.89177 0.88823 0.88249 0.89925 0.91012 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.40 9.76 -19.48 -0.19 -3.59 16 3 C 0.06 0.83 6.68 -39.13 -0.26 0.57 16 4 C 0.03 0.42 10.21 -17.30 -0.18 0.24 16 5 N -0.45 -6.95 10.34 -12.80 -0.13 -7.08 16 6 C 0.11 1.75 8.97 -17.14 -0.15 1.60 16 7 C -0.13 -2.22 4.89 -104.84 -0.51 -2.74 16 8 C 0.57 10.54 6.08 -12.33 -0.07 10.47 16 9 O -0.52 -11.27 15.05 5.31 0.08 -11.19 16 10 N -0.59 -9.72 2.24 -175.05 -0.39 -10.11 16 11 C 0.08 1.04 8.15 59.85 0.49 1.53 16 12 C 0.16 2.76 2.41 -67.93 -0.16 2.60 16 13 H 0.10 1.98 6.66 -51.93 -0.35 1.63 16 14 C 0.15 2.96 5.32 -4.05 -0.02 2.94 16 15 N -0.73 -18.66 5.43 -59.91 -0.33 -18.98 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 20 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.16 -2.08 5.12 -90.62 -0.46 -2.55 16 25 C -0.18 -2.10 10.18 -26.69 -0.27 -2.37 16 26 C -0.17 -1.97 9.80 -26.69 -0.26 -2.23 16 27 C -0.03 -0.40 5.96 -103.75 -0.62 -1.02 16 28 C -0.11 -1.42 9.01 36.01 0.32 -1.09 16 29 H 0.10 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.35 7.68 -51.93 -0.40 -0.05 16 31 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 32 H 0.16 1.48 6.30 -52.49 -0.33 1.15 16 33 H 0.17 2.86 6.32 -52.49 -0.33 2.53 16 34 H 0.07 1.06 7.08 -51.93 -0.37 0.69 16 35 H 0.07 0.86 6.50 -51.93 -0.34 0.53 16 36 H 0.06 0.77 6.29 -51.93 -0.33 0.44 16 37 H 0.03 0.58 7.48 -51.93 -0.39 0.20 16 38 H 0.02 0.42 7.84 -51.93 -0.41 0.02 16 39 H 0.39 10.79 7.06 -40.82 -0.29 10.50 16 40 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.11 1.24 6.66 -51.93 -0.35 0.90 16 42 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.24 7.67 -51.93 -0.40 0.84 16 46 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.07 0.82 7.77 -51.93 -0.40 0.42 16 48 H 0.07 1.06 6.60 -51.93 -0.34 0.72 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -34.44 387.18 -7.91 -42.35 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.07 Total: 11.37 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.42 Total: 1.74 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.13 Total: -64.21 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.11 Total: -14.79 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.44 -7.91 -42.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725461402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.582 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds