Wall clock time and date at job start Tue Mar 31 2020 17:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35918 * 117.00058 * 2 1 4 4 C 1.38847 * 120.40258 * 359.97438 * 3 2 1 5 5 N 1.31888 * 120.99459 * 179.72223 * 4 3 2 6 6 C 1.31681 * 121.94607 * 0.27837 * 5 4 3 7 7 C 1.39524 * 120.68721 * 0.02562 * 6 5 4 8 8 C 1.47855 * 120.52622 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99691 * 130.87645 * 8 7 6 10 10 N 1.34776 * 120.00535 * 310.87352 * 8 7 6 11 11 C 1.46502 * 119.99442 * 4.62388 * 10 8 7 12 12 C 1.46493 * 120.00233 * 184.62028 * 10 8 7 13 13 H 1.08996 * 109.47682 * 0.02562 * 12 10 8 14 14 C 1.53001 * 109.47134 * 240.00072 * 12 10 8 15 15 N 1.46490 * 109.47267 * 55.00256 * 14 12 10 16 16 C 1.36934 * 120.00204 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00411 * 359.97438 * 16 15 14 18 18 C 1.38817 * 120.00309 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99475 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00242 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47189 * 90.00292 * 20 18 16 22 22 H 1.48504 * 109.47381 * 209.99621 * 20 18 16 23 23 H 1.48496 * 109.47287 * 329.99843 * 20 18 16 24 24 C 1.53001 * 109.46967 * 120.00050 * 12 10 8 25 25 C 1.53004 * 117.50074 * 248.74503 * 24 12 10 26 26 C 1.53000 * 117.49940 * 180.08404 * 24 12 10 27 27 C 1.38850 * 120.40812 * 180.29794 * 3 2 1 28 28 C 1.50705 * 120.87756 * 359.97438 * 27 3 2 29 29 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46795 * 299.99650 * 1 2 3 31 31 H 1.08993 * 109.47182 * 60.00525 * 1 2 3 32 32 H 1.07991 * 119.50330 * 359.97438 * 4 3 2 33 33 H 1.07989 * 119.65333 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47275 * 84.75023 * 11 10 8 35 35 H 1.09004 * 109.46981 * 204.74344 * 11 10 8 36 36 H 1.08999 * 109.47288 * 324.74250 * 11 10 8 37 37 H 1.09004 * 109.46965 * 175.00043 * 14 12 10 38 38 H 1.09001 * 109.47366 * 294.99916 * 14 12 10 39 39 H 0.97001 * 120.00295 * 359.97438 * 15 14 12 40 40 H 0.97001 * 119.99688 * 179.97438 * 19 18 16 41 41 H 1.09004 * 115.55029 * 34.42070 * 24 12 10 42 42 H 1.08995 * 117.49511 * 0.02562 * 25 24 12 43 43 H 1.09005 * 117.49470 * 145.02023 * 25 24 12 44 44 H 1.09002 * 117.50007 * 214.98108 * 26 24 12 45 45 H 1.09004 * 117.49893 * 0.02562 * 26 24 12 46 46 H 1.08993 * 109.47318 * 274.74837 * 28 27 3 47 47 H 1.08999 * 109.46842 * 34.75195 * 28 27 3 48 48 H 1.08999 * 109.46449 * 154.74733 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3808 -0.0005 5 7 1.8846 3.5620 0.0049 6 6 3.1953 3.6891 0.0057 7 6 4.0198 2.5636 0.0001 8 6 5.4911 2.7104 0.0004 9 8 6.1644 2.0815 0.7933 10 7 6.0857 3.5415 -0.8783 11 6 5.2701 4.3751 -1.7650 12 6 7.5473 3.6114 -0.9468 13 1 7.9785 2.9249 -0.2181 14 6 8.0048 5.0381 -0.6369 15 7 7.4601 5.4554 0.6573 16 6 7.7379 6.7037 1.1468 17 1 8.3589 7.3806 0.5789 18 6 7.2214 7.0993 2.3730 19 7 6.4641 6.2746 3.0650 20 14 7.5998 8.8025 3.0403 21 1 6.5625 9.7580 2.5754 22 1 7.6059 8.7624 4.5248 23 1 8.9316 9.2410 2.5515 24 6 8.0113 3.2207 -2.3514 25 6 8.7682 1.8997 -2.5035 26 6 9.5164 3.2295 -2.6262 27 6 3.4321 1.2936 -0.0062 28 6 4.2810 0.0484 -0.0125 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2197 2.3225 -0.0014 33 1 3.6365 4.6748 0.0098 34 1 4.9871 5.2902 -1.2448 35 1 5.8443 4.6270 -2.6567 36 1 4.3722 3.8285 -2.0535 37 1 9.0937 5.0707 -0.6004 38 1 7.6472 5.7116 -1.4158 39 1 6.9026 4.8474 1.1677 40 1 6.1034 6.5509 3.9220 41 1 7.3495 3.5181 -3.1649 42 1 8.9352 1.3089 -1.6030 43 1 8.6045 1.3283 -3.4173 44 1 9.8447 3.5323 -3.6205 45 1 10.1761 3.5133 -1.8062 46 1 4.4201 -0.3017 1.0102 47 1 3.7853 -0.7263 -0.5975 48 1 5.2516 0.2727 -0.4550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725461402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:04 Heat of formation + Delta-G solvation = -8.685486 kcal Electronic energy + Delta-G solvation = -29815.759331 eV Core-core repulsion = 25872.073539 eV Total energy + Delta-G solvation = -3943.685792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.21532 -40.92770 -39.18668 -38.60475 -36.61060 -35.82391 -34.88296 -33.27217 -31.87009 -29.80176 -28.89336 -28.51138 -27.82570 -26.18101 -24.86074 -23.74190 -23.39077 -22.87184 -21.55724 -20.42188 -19.15212 -19.12125 -18.60815 -17.82453 -17.48950 -17.24854 -16.90153 -16.59927 -16.28650 -15.92646 -15.40739 -15.30005 -15.02316 -14.93604 -14.74755 -14.61376 -14.27797 -13.96977 -13.89947 -13.83417 -13.52306 -13.18124 -13.05497 -12.95433 -12.88700 -12.72518 -12.70565 -12.39533 -12.34059 -12.21435 -12.10048 -11.77466 -11.46160 -11.21594 -10.95928 -10.89716 -10.60552 -10.43257 -9.63912 -9.51150 -8.99131 -7.92248 -5.22419 -0.38227 0.07246 1.45803 1.48094 1.56432 1.56538 1.79208 2.25115 2.55550 2.56469 2.90940 3.27492 3.40765 3.41111 3.49115 3.59382 3.64639 3.93106 3.98857 4.06894 4.14032 4.17811 4.26378 4.32774 4.37950 4.42437 4.42838 4.47976 4.54373 4.62643 4.63522 4.69587 4.78668 4.80558 4.86457 4.91435 5.00068 5.05463 5.08165 5.09826 5.25400 5.30838 5.31674 5.48697 5.60132 6.13818 6.26358 6.30207 6.73339 7.04469 7.33671 8.09684 8.32982 9.30593 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.004206 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.816703 B = 6655.925095 C = 8698.863561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.315 6.315 3 C 0.076 3.924 4 C 0.040 3.960 5 N -0.467 5.467 6 C 0.096 3.904 7 C -0.149 4.149 8 C 0.565 3.435 9 O -0.567 6.567 10 N -0.583 5.583 11 C 0.077 3.923 12 C 0.171 3.829 13 H 0.069 0.931 14 C 0.149 3.851 15 N -0.742 5.742 16 C -0.241 4.241 17 H 0.079 0.921 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.285 1.285 22 H -0.300 1.300 23 H -0.268 1.268 24 C -0.167 4.167 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.042 4.042 28 C -0.098 4.098 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.197 0.803 33 H 0.156 0.844 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.037 0.963 39 H 0.371 0.629 40 H 0.248 0.752 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -13.303 -16.054 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.227 6.227 3 C 0.028 3.972 4 C -0.118 4.118 5 N -0.176 5.176 6 C -0.061 4.061 7 C -0.154 4.154 8 C 0.353 3.647 9 O -0.446 6.446 10 N -0.313 5.313 11 C -0.065 4.065 12 C 0.068 3.932 13 H 0.087 0.913 14 C 0.021 3.979 15 N -0.384 5.384 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.802 3.198 21 H -0.212 1.212 22 H -0.227 1.227 23 H -0.193 1.193 24 C -0.186 4.186 25 C -0.208 4.208 26 C -0.197 4.197 27 C -0.051 4.051 28 C -0.154 4.154 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.214 0.786 33 H 0.173 0.827 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.203 0.797 40 H 0.057 0.943 41 H 0.145 0.855 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.113 0.887 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.898 -12.914 -15.676 22.594 hybrid contribution 0.361 0.359 1.326 1.420 sum -9.536 -12.556 -14.350 21.319 Atomic orbital electron populations 1.23526 0.75543 1.06419 1.02851 1.86084 1.23987 1.24416 1.88187 1.19634 0.91535 0.86990 0.99032 1.23607 1.02165 0.86216 0.99808 1.67609 1.11291 1.27145 1.11541 1.22892 0.88815 0.98179 0.96255 1.20597 0.93834 0.94704 1.06245 1.18241 0.87181 0.79137 0.80150 1.90762 1.65833 1.48698 1.39336 1.47558 1.06705 1.40122 1.36949 1.22035 0.95826 0.94345 0.94326 1.20750 0.79098 0.96894 0.96493 0.91276 1.21105 0.96261 0.92936 0.87558 1.42520 1.60712 1.15134 1.20076 1.19628 1.24511 0.92020 1.01156 0.90304 1.25578 1.01027 1.01946 0.98183 1.69884 1.39898 1.37287 1.14907 0.85143 0.78151 0.79797 0.76683 1.21169 1.22705 1.19258 1.22447 0.96509 1.03506 0.96152 1.23059 1.03771 0.90522 1.03483 1.23016 0.92495 1.00329 1.03871 1.19843 0.92125 0.95071 0.98054 1.20609 0.98064 0.93496 1.03224 0.85546 0.91464 0.90700 0.78610 0.82688 0.93141 0.88169 0.90150 0.95136 0.94519 0.79734 0.94335 0.85483 0.90313 0.86640 0.86089 0.89602 0.90790 0.88725 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.82 113.37 1.11 1.21 16 2 O -0.31 -6.14 9.76 -92.63 -0.90 -7.04 16 3 C 0.08 1.88 6.68 22.56 0.15 2.03 16 4 C 0.04 0.94 10.21 84.83 0.87 1.81 16 5 N -0.47 -14.05 10.34 -194.41 -2.01 -16.06 16 6 C 0.10 3.23 8.97 85.03 0.76 3.99 16 7 C -0.15 -5.09 4.89 -20.01 -0.10 -5.19 16 8 C 0.57 22.09 6.08 86.79 0.53 22.61 16 9 O -0.57 -26.40 15.05 -3.90 -0.06 -26.45 16 10 N -0.58 -20.00 2.24 -826.00 -1.85 -21.85 16 11 C 0.08 2.10 8.15 127.77 1.04 3.14 16 12 C 0.17 5.94 2.41 44.99 0.11 6.05 16 13 H 0.07 2.86 6.66 -2.39 -0.02 2.85 16 14 C 0.15 6.00 5.32 86.38 0.46 6.46 16 15 N -0.74 -39.23 5.43 -343.47 -1.87 -41.09 16 16 C -0.24 -13.78 9.99 84.04 0.84 -12.94 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 19 N -0.97 -62.35 13.06 21.65 0.28 -62.07 16 20 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 22 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 C -0.17 -4.13 5.12 -10.79 -0.06 -4.19 16 25 C -0.17 -3.77 10.18 30.62 0.31 -3.46 16 26 C -0.16 -3.43 9.80 30.62 0.30 -3.13 16 27 C -0.04 -1.25 5.96 -19.30 -0.12 -1.37 16 28 C -0.10 -2.66 9.01 71.24 0.64 -2.02 16 29 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 0.56 7.68 -2.39 -0.02 0.55 16 31 H 0.07 0.50 7.67 -2.39 -0.02 0.48 16 32 H 0.20 2.95 6.30 -2.92 -0.02 2.93 16 33 H 0.16 5.57 6.32 -2.92 -0.02 5.55 16 34 H 0.05 1.59 7.08 -2.39 -0.02 1.57 16 35 H 0.10 2.16 6.50 -2.38 -0.02 2.15 16 36 H 0.08 1.93 6.29 -2.39 -0.02 1.91 16 37 H 0.03 1.24 7.48 -2.39 -0.02 1.22 16 38 H 0.04 1.39 7.84 -2.39 -0.02 1.38 16 39 H 0.37 21.83 7.06 -92.71 -0.65 21.17 16 40 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.13 2.62 6.66 -2.38 -0.02 2.61 16 42 H 0.08 2.01 8.05 -2.39 -0.02 1.99 16 43 H 0.12 1.98 8.14 -2.38 -0.02 1.97 16 44 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.09 2.09 7.67 -2.38 -0.02 2.07 16 46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.09 2.06 7.77 -2.39 -0.02 2.04 16 48 H 0.06 1.80 6.60 -2.39 -0.02 1.78 16 Total: -1.00 -77.98 387.18 3.27 -74.71 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: 0.33 Total: 39.33 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 7.32 Total: 11.02 kcal Atomic # 7 Polarization: -135.63 SS G_CDS: -5.45 Total: -141.08 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.96 Total: -33.49 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -77.98 3.27 -74.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725461402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.024 kcal (2) G-P(sol) polarization free energy of solvation -77.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds