Wall clock time and date at job start Tue Mar 31 2020 17:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35921 * 116.99581 * 2 1 4 4 C 1.38856 * 120.40986 * 0.02562 * 3 2 1 5 5 N 1.31876 * 121.00262 * 179.97438 * 4 3 2 6 6 C 1.31687 * 121.94122 * 359.71913 * 5 4 3 7 7 C 1.39524 * 120.68731 * 0.54465 * 6 5 4 8 8 C 1.47856 * 120.52858 * 179.74646 * 7 6 5 9 9 O 1.21553 * 120.00267 * 173.91564 * 8 7 6 10 10 N 1.34779 * 119.99983 * 353.91926 * 8 7 6 11 11 C 1.46501 * 120.00086 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.04961 * 33.58534 * 11 10 8 13 13 C 1.53865 * 110.03177 * 272.16558 * 11 10 8 14 14 C 1.54265 * 106.60045 * 240.71091 * 13 11 10 15 15 C 1.54891 * 104.19243 * 23.61449 * 14 13 11 16 16 C 1.54266 * 110.02935 * 154.99577 * 11 10 8 17 17 H 1.09003 * 110.48584 * 214.48105 * 16 11 10 18 18 C 1.52995 * 110.48992 * 337.00260 * 16 11 10 19 19 N 1.46503 * 109.46951 * 185.00069 * 18 16 11 20 20 C 1.36939 * 119.99704 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00290 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99855 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00186 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47368 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.47187 * 300.00532 * 24 22 20 27 27 H 1.48506 * 109.46867 * 60.00108 * 24 22 20 28 28 C 1.38846 * 120.40684 * 179.97438 * 3 2 1 29 29 C 1.50704 * 120.87548 * 0.04770 * 28 3 2 30 30 H 1.09003 * 109.47155 * 60.00396 * 1 2 3 31 31 H 1.09002 * 109.46687 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47352 * 299.99558 * 1 2 3 33 33 H 1.08001 * 119.49091 * 359.95435 * 4 3 2 34 34 H 1.07997 * 119.64985 * 180.26793 * 6 5 4 35 35 H 0.97000 * 119.99645 * 359.97438 * 10 8 7 36 36 H 1.08996 * 110.03589 * 0.02562 * 13 11 10 37 37 H 1.09004 * 110.03084 * 121.38599 * 13 11 10 38 38 H 1.09005 * 110.48652 * 142.28618 * 14 13 11 39 39 H 1.08996 * 110.48738 * 264.93589 * 14 13 11 40 40 H 1.09001 * 110.75466 * 203.73956 * 15 14 13 41 41 H 1.09008 * 110.75689 * 80.37142 * 15 14 13 42 42 H 1.08996 * 109.47353 * 64.99463 * 18 16 11 43 43 H 1.09005 * 109.46602 * 304.99338 * 18 16 11 44 44 H 0.97002 * 120.00076 * 359.97438 * 19 18 16 45 45 H 0.97003 * 120.00606 * 359.97438 * 23 22 20 46 46 H 1.09002 * 109.47027 * 263.63398 * 29 28 3 47 47 H 1.08999 * 109.47078 * 23.63973 * 29 28 3 48 48 H 1.09000 * 109.46832 * 143.63917 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3810 0.0005 5 7 1.8844 3.5622 0.0010 6 6 3.1951 3.6893 0.0066 7 6 4.0197 2.5638 0.0007 8 6 5.4909 2.7106 0.0013 9 8 6.1997 1.7288 0.1078 10 7 6.0462 3.9330 -0.1162 11 6 7.5040 4.0786 -0.1150 12 1 7.9662 3.2143 -0.5921 13 6 8.0182 4.2221 1.3280 14 6 8.7156 5.5955 1.4129 15 6 8.0720 6.4194 0.2701 16 6 7.9067 5.3698 -0.8569 17 1 8.8474 5.2268 -1.3886 18 6 6.8036 5.7959 -1.8277 19 7 7.2567 6.9523 -2.6046 20 6 6.4321 7.5118 -3.5439 21 1 5.4479 7.1002 -3.7122 22 6 6.8612 8.6079 -4.2796 23 7 8.0608 9.1091 -4.0748 24 14 5.7361 9.3715 -5.5604 25 1 6.4248 10.5196 -6.2029 26 1 5.3992 8.3570 -6.5913 27 1 4.4899 9.8445 -4.9056 28 6 3.4320 1.2937 0.0005 29 6 4.2809 0.0486 0.0000 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2196 2.3225 0.0002 34 1 3.6363 4.6750 0.0112 35 1 5.4806 4.7164 -0.2015 36 1 7.1833 4.1829 2.0276 37 1 8.7296 3.4270 1.5517 38 1 8.5200 6.0637 2.3776 39 1 9.7881 5.4895 1.2496 40 1 8.7350 7.2247 -0.0462 41 1 7.1029 6.8134 0.5764 42 1 5.9086 6.0635 -1.2661 43 1 6.5757 4.9712 -2.5031 44 1 8.1408 7.3218 -2.4536 45 1 8.6450 8.7129 -3.4094 46 1 4.5794 -0.1881 1.0214 47 1 3.7079 -0.7817 -0.4127 48 1 5.1696 0.2150 -0.6088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732617576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:20 Heat of formation + Delta-G solvation = -28.379843 kcal Electronic energy + Delta-G solvation = -28986.689676 eV Core-core repulsion = 25042.149873 eV Total energy + Delta-G solvation = -3944.539803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30412 -40.02567 -38.52384 -37.82041 -34.74362 -34.03690 -33.62583 -31.49834 -31.00234 -28.48360 -28.28661 -28.00504 -27.32069 -24.42410 -24.02681 -22.68792 -22.46181 -21.11171 -20.42318 -19.34392 -18.68278 -17.70244 -17.37049 -16.59197 -16.53758 -16.34926 -16.06092 -15.31196 -15.00568 -14.78084 -14.47473 -14.31678 -13.97996 -13.72999 -13.65353 -13.38282 -13.20217 -13.08052 -12.95049 -12.88567 -12.43898 -12.40891 -12.07233 -11.84774 -11.62713 -11.17396 -10.98339 -10.78872 -10.60388 -10.59405 -10.45220 -10.35290 -10.22696 -9.98031 -9.75201 -9.49984 -9.18394 -9.00526 -8.89356 -8.76768 -7.02340 -6.11464 -3.11395 0.35778 0.94064 2.64109 2.72079 3.17353 3.51761 3.55079 3.56405 3.72457 4.04964 4.19891 4.46116 4.47788 4.52227 4.66430 4.70435 4.71708 4.73231 4.90072 4.94904 4.98881 5.08902 5.33483 5.36309 5.47842 5.49574 5.58991 5.61960 5.63322 5.67440 5.75755 5.81957 5.90636 5.94645 5.97163 6.01032 6.03711 6.17700 6.28858 6.40112 6.40432 6.56010 6.63817 6.70003 6.78775 7.43933 7.56926 7.79310 8.11422 8.75011 9.21474 10.07852 10.22503 11.37113 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.003240 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.948395 B = 8639.799569 C =10670.497483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.063 3.937 4 C 0.041 3.959 5 N -0.454 5.454 6 C 0.106 3.894 7 C -0.154 4.154 8 C 0.564 3.436 9 O -0.530 6.530 10 N -0.710 5.710 11 C 0.150 3.850 12 H 0.092 0.908 13 C -0.131 4.131 14 C -0.125 4.125 15 C -0.114 4.114 16 C -0.109 4.109 17 H 0.088 0.912 18 C 0.170 3.830 19 N -0.740 5.740 20 C -0.333 4.333 21 H 0.064 0.936 22 C -0.044 4.044 23 N -0.943 5.943 24 Si 1.079 2.921 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.295 1.295 28 C -0.012 4.012 29 C -0.113 4.113 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.404 0.596 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.015 0.985 43 H 0.021 0.979 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 -17.177 13.351 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.016 3.984 4 C -0.116 4.116 5 N -0.163 5.163 6 C -0.054 4.054 7 C -0.159 4.159 8 C 0.351 3.649 9 O -0.409 6.409 10 N -0.363 5.363 11 C 0.045 3.955 12 H 0.110 0.890 13 C -0.170 4.170 14 C -0.163 4.163 15 C -0.151 4.151 16 C -0.129 4.129 17 H 0.106 0.894 18 C 0.042 3.958 19 N -0.386 5.386 20 C -0.464 4.464 21 H 0.082 0.918 22 C -0.242 4.242 23 N -0.589 5.589 24 Si 0.910 3.090 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.222 1.222 28 C -0.021 4.021 29 C -0.169 4.169 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.242 0.758 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.032 0.968 43 H 0.039 0.961 44 H 0.201 0.799 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.980 -16.215 12.231 23.088 hybrid contribution 0.152 -1.285 1.125 1.714 sum -10.827 -17.499 13.356 24.533 Atomic orbital electron populations 1.23153 0.77912 1.04507 1.01652 1.86092 1.21566 1.25498 1.88654 1.19763 0.92340 0.86068 1.00275 1.23103 1.00751 0.87076 1.00683 1.67553 1.11873 1.25898 1.10985 1.22904 0.88770 0.98219 0.95492 1.20741 0.94883 0.93785 1.06484 1.17898 0.86651 0.83635 0.76763 1.90721 1.63048 1.37410 1.49690 1.46198 1.08371 1.08406 1.73286 1.21651 0.79007 0.99052 0.95816 0.88999 1.22572 1.00388 0.97768 0.96239 1.22385 0.99790 0.95140 0.98947 1.22522 1.01156 0.97382 0.94054 1.22515 1.00717 0.93317 0.96320 0.89394 1.20512 0.93448 0.90333 0.91525 1.42333 1.17520 1.34078 1.44634 1.20016 0.98197 1.12983 1.15156 0.91827 1.25758 0.99984 0.96163 1.02248 1.70887 1.08198 1.43445 1.36350 0.83260 0.74165 0.76131 0.75489 1.21019 1.22285 1.22212 1.19827 0.90779 0.95884 0.95590 1.20913 0.99571 0.92498 1.03870 0.92267 0.87762 0.92338 0.82087 0.82058 0.75775 0.91446 0.91277 0.91786 0.91577 0.91017 0.91362 0.96762 0.96123 0.79928 0.93413 0.90278 0.91481 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.88 9.57 -19.49 -0.19 -3.07 16 3 C 0.06 0.69 6.68 -39.13 -0.26 0.43 16 4 C 0.04 0.43 10.21 -17.30 -0.18 0.26 16 5 N -0.45 -5.72 10.34 -12.79 -0.13 -5.85 16 6 C 0.11 1.30 10.69 -17.13 -0.18 1.12 16 7 C -0.15 -1.98 5.89 -104.84 -0.62 -2.60 16 8 C 0.56 7.83 7.72 -12.32 -0.10 7.73 16 9 O -0.53 -8.34 13.15 5.32 0.07 -8.27 16 10 N -0.71 -9.26 4.29 -53.66 -0.23 -9.49 16 11 C 0.15 2.00 3.12 -66.82 -0.21 1.79 16 12 H 0.09 1.32 7.57 -51.93 -0.39 0.92 16 13 C -0.13 -1.54 6.59 -25.62 -0.17 -1.71 16 14 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 15 C -0.11 -1.60 6.19 -24.74 -0.15 -1.75 16 16 C -0.11 -1.66 2.85 -88.96 -0.25 -1.92 16 17 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 18 C 0.17 3.26 4.73 -4.04 -0.02 3.24 16 19 N -0.74 -18.17 5.49 -59.91 -0.33 -18.49 16 20 C -0.33 -9.32 9.99 -15.06 -0.15 -9.47 16 21 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 23 N -0.94 -29.00 13.70 55.49 0.76 -28.24 16 24 Si 1.08 25.93 29.92 -169.99 -5.09 20.85 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 C -0.01 -0.15 5.97 -103.76 -0.62 -0.76 16 29 C -0.11 -1.31 8.70 36.01 0.31 -1.00 16 30 H 0.06 0.26 7.67 -51.93 -0.40 -0.14 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 33 H 0.16 1.19 6.30 -52.49 -0.33 0.86 16 34 H 0.16 1.74 6.46 -52.49 -0.34 1.40 16 35 H 0.40 5.01 4.66 -40.82 -0.19 4.82 16 36 H 0.07 0.79 7.92 -51.93 -0.41 0.38 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.98 7.97 -51.92 -0.41 0.57 16 42 H 0.01 0.27 6.41 -51.93 -0.33 -0.06 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.37 9.21 6.47 -40.82 -0.26 8.95 16 45 H 0.25 7.67 6.77 -40.82 -0.28 7.39 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 0.70 7.44 -51.93 -0.39 0.31 16 48 H 0.10 1.30 5.95 -51.93 -0.31 1.00 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -33.82 381.48 -8.28 -42.10 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -7.03 Total: 11.20 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.87 Total: -6.49 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.07 Total: -62.07 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.12 Total: -11.34 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.09 Total: 20.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.82 -8.28 -42.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732617576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.721 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds