Wall clock time and date at job start Tue Mar 31 2020 17:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35921 * 116.99581 * 2 1 4 4 C 1.38856 * 120.40986 * 0.02562 * 3 2 1 5 5 N 1.31876 * 121.00262 * 179.97438 * 4 3 2 6 6 C 1.31687 * 121.94122 * 359.71913 * 5 4 3 7 7 C 1.39524 * 120.68731 * 0.54465 * 6 5 4 8 8 C 1.47856 * 120.52858 * 179.74646 * 7 6 5 9 9 O 1.21553 * 120.00267 * 173.91564 * 8 7 6 10 10 N 1.34779 * 119.99983 * 353.91926 * 8 7 6 11 11 C 1.46501 * 120.00086 * 179.97438 * 10 8 7 12 12 H 1.09006 * 110.04961 * 33.58534 * 11 10 8 13 13 C 1.53865 * 110.03177 * 272.16558 * 11 10 8 14 14 C 1.54265 * 106.60045 * 240.71091 * 13 11 10 15 15 C 1.54891 * 104.19243 * 23.61449 * 14 13 11 16 16 C 1.54266 * 110.02935 * 154.99577 * 11 10 8 17 17 H 1.09003 * 110.48584 * 214.48105 * 16 11 10 18 18 C 1.52995 * 110.48992 * 337.00260 * 16 11 10 19 19 N 1.46503 * 109.46951 * 185.00069 * 18 16 11 20 20 C 1.36939 * 119.99704 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00290 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99855 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99860 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00186 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47368 * 180.02562 * 24 22 20 26 26 H 1.48507 * 109.47187 * 300.00532 * 24 22 20 27 27 H 1.48506 * 109.46867 * 60.00108 * 24 22 20 28 28 C 1.38846 * 120.40684 * 179.97438 * 3 2 1 29 29 C 1.50704 * 120.87548 * 0.04770 * 28 3 2 30 30 H 1.09003 * 109.47155 * 60.00396 * 1 2 3 31 31 H 1.09002 * 109.46687 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47352 * 299.99558 * 1 2 3 33 33 H 1.08001 * 119.49091 * 359.95435 * 4 3 2 34 34 H 1.07997 * 119.64985 * 180.26793 * 6 5 4 35 35 H 0.97000 * 119.99645 * 359.97438 * 10 8 7 36 36 H 1.08996 * 110.03589 * 0.02562 * 13 11 10 37 37 H 1.09004 * 110.03084 * 121.38599 * 13 11 10 38 38 H 1.09005 * 110.48652 * 142.28618 * 14 13 11 39 39 H 1.08996 * 110.48738 * 264.93589 * 14 13 11 40 40 H 1.09001 * 110.75466 * 203.73956 * 15 14 13 41 41 H 1.09008 * 110.75689 * 80.37142 * 15 14 13 42 42 H 1.08996 * 109.47353 * 64.99463 * 18 16 11 43 43 H 1.09005 * 109.46602 * 304.99338 * 18 16 11 44 44 H 0.97002 * 120.00076 * 359.97438 * 19 18 16 45 45 H 0.97003 * 120.00606 * 359.97438 * 23 22 20 46 46 H 1.09002 * 109.47027 * 263.63398 * 29 28 3 47 47 H 1.08999 * 109.47078 * 23.63973 * 29 28 3 48 48 H 1.09000 * 109.46832 * 143.63917 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3810 0.0005 5 7 1.8844 3.5622 0.0010 6 6 3.1951 3.6893 0.0066 7 6 4.0197 2.5638 0.0007 8 6 5.4909 2.7106 0.0013 9 8 6.1997 1.7288 0.1078 10 7 6.0462 3.9330 -0.1162 11 6 7.5040 4.0786 -0.1150 12 1 7.9662 3.2143 -0.5921 13 6 8.0182 4.2221 1.3280 14 6 8.7156 5.5955 1.4129 15 6 8.0720 6.4194 0.2701 16 6 7.9067 5.3698 -0.8569 17 1 8.8474 5.2268 -1.3886 18 6 6.8036 5.7959 -1.8277 19 7 7.2567 6.9523 -2.6046 20 6 6.4321 7.5118 -3.5439 21 1 5.4479 7.1002 -3.7122 22 6 6.8612 8.6079 -4.2796 23 7 8.0608 9.1091 -4.0748 24 14 5.7361 9.3715 -5.5604 25 1 6.4248 10.5196 -6.2029 26 1 5.3992 8.3570 -6.5913 27 1 4.4899 9.8445 -4.9056 28 6 3.4320 1.2937 0.0005 29 6 4.2809 0.0486 0.0000 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2196 2.3225 0.0002 34 1 3.6363 4.6750 0.0112 35 1 5.4806 4.7164 -0.2015 36 1 7.1833 4.1829 2.0276 37 1 8.7296 3.4270 1.5517 38 1 8.5200 6.0637 2.3776 39 1 9.7881 5.4895 1.2496 40 1 8.7350 7.2247 -0.0462 41 1 7.1029 6.8134 0.5764 42 1 5.9086 6.0635 -1.2661 43 1 6.5757 4.9712 -2.5031 44 1 8.1408 7.3218 -2.4536 45 1 8.6450 8.7129 -3.4094 46 1 4.5794 -0.1881 1.0214 47 1 3.7079 -0.7817 -0.4127 48 1 5.1696 0.2150 -0.6088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732617576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:19 Heat of formation + Delta-G solvation = -50.606836 kcal Electronic energy + Delta-G solvation = -28987.653511 eV Core-core repulsion = 25042.149873 eV Total energy + Delta-G solvation = -3945.503638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21399 -41.05104 -39.47839 -38.82218 -36.61745 -35.02512 -34.64993 -33.33330 -31.89739 -30.03850 -29.26382 -28.56484 -28.30275 -26.11618 -25.06388 -24.35718 -23.45546 -22.12763 -21.48427 -20.59301 -19.71943 -19.22610 -18.56098 -17.56794 -17.42510 -17.30139 -17.03472 -16.63479 -16.15170 -15.96371 -15.69945 -15.55243 -15.23570 -15.16355 -14.91368 -14.69133 -14.52420 -14.02734 -13.87257 -13.81083 -13.65546 -13.18062 -12.85977 -12.81438 -12.76154 -12.60776 -12.39125 -12.22201 -12.03240 -11.90530 -11.85071 -11.72877 -11.51825 -11.21874 -11.20939 -10.91042 -10.71869 -10.48200 -10.09446 -9.57009 -9.10756 -8.39244 -5.33141 -0.56001 0.04538 1.58631 1.68058 1.68198 1.84089 1.84572 2.27747 2.63132 2.70787 3.19538 3.36537 3.38235 3.41075 3.56445 3.60651 3.61631 3.79344 3.96020 4.02866 4.06803 4.32450 4.33421 4.38734 4.40400 4.47352 4.49849 4.51198 4.58298 4.61115 4.70634 4.72498 4.75801 4.78401 4.95548 5.02024 5.04686 5.09813 5.15543 5.20188 5.27268 5.37374 5.42261 5.50972 5.58807 6.10060 6.36354 6.50835 6.68173 7.03551 7.09964 8.00461 8.10931 9.12958 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.003240 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.948395 B = 8639.799569 C =10670.497483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.068 3.932 4 C 0.045 3.955 5 N -0.472 5.472 6 C 0.098 3.902 7 C -0.164 4.164 8 C 0.565 3.435 9 O -0.552 6.552 10 N -0.706 5.706 11 C 0.155 3.845 12 H 0.082 0.918 13 C -0.123 4.123 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.101 4.101 17 H 0.080 0.920 18 C 0.171 3.829 19 N -0.752 5.752 20 C -0.335 4.335 21 H 0.065 0.935 22 C -0.102 4.102 23 N -0.974 5.974 24 Si 1.125 2.875 25 H -0.293 1.293 26 H -0.281 1.281 27 H -0.276 1.276 28 C -0.031 4.031 29 C -0.104 4.104 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.194 0.806 34 H 0.170 0.830 35 H 0.407 0.593 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.008 0.992 44 H 0.362 0.638 45 H 0.245 0.755 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 -18.019 14.256 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.020 3.980 4 C -0.112 4.112 5 N -0.181 5.181 6 C -0.060 4.060 7 C -0.169 4.169 8 C 0.352 3.648 9 O -0.432 6.432 10 N -0.359 5.359 11 C 0.050 3.950 12 H 0.101 0.899 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.149 4.149 16 C -0.121 4.121 17 H 0.099 0.901 18 C 0.045 3.955 19 N -0.396 5.396 20 C -0.466 4.466 21 H 0.083 0.917 22 C -0.293 4.293 23 N -0.622 5.622 24 Si 0.950 3.050 25 H -0.219 1.219 26 H -0.207 1.207 27 H -0.202 1.202 28 C -0.040 4.040 29 C -0.160 4.160 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.211 0.789 34 H 0.187 0.813 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.194 0.806 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.951 -17.093 13.168 25.166 hybrid contribution 0.647 -1.152 0.860 1.577 sum -12.305 -18.246 14.028 26.098 Atomic orbital electron populations 1.23519 0.75566 1.06400 1.02835 1.86092 1.23955 1.24628 1.88219 1.19761 0.91898 0.86951 0.99348 1.23599 1.02192 0.86298 0.99156 1.67597 1.11858 1.26972 1.11661 1.23022 0.88937 0.98421 0.95665 1.20662 0.94137 0.94400 1.07745 1.18071 0.87147 0.83342 0.76221 1.90710 1.63661 1.38017 1.50827 1.46147 1.08230 1.08440 1.73078 1.21569 0.79271 0.97368 0.96763 0.89944 1.22510 1.00690 0.98243 0.94700 1.22327 0.99991 0.94268 0.98506 1.22473 1.00997 0.96891 0.94569 1.22384 0.98926 0.94806 0.95940 0.90127 1.20626 0.95244 0.88082 0.91573 1.42519 1.17045 1.35272 1.44806 1.20363 0.98467 1.12621 1.15171 0.91733 1.27140 1.00594 0.97233 1.04354 1.70989 1.09324 1.44575 1.37332 0.82663 0.73151 0.75425 0.73769 1.21861 1.20701 1.20184 1.20019 0.91861 0.95822 0.96258 1.20800 0.98886 0.92763 1.03561 0.91224 0.85690 0.90917 0.78937 0.81283 0.75423 0.91026 0.90336 0.90088 0.90688 0.92512 0.91644 0.95532 0.97421 0.80568 0.94457 0.90239 0.90459 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.82 113.37 1.11 1.19 16 2 O -0.32 -5.30 9.57 -92.66 -0.89 -6.19 16 3 C 0.07 1.40 6.68 22.56 0.15 1.55 16 4 C 0.04 0.86 10.21 84.83 0.87 1.72 16 5 N -0.47 -11.23 10.34 -194.39 -2.01 -13.24 16 6 C 0.10 2.36 10.69 85.02 0.91 3.27 16 7 C -0.16 -4.19 5.89 -20.01 -0.12 -4.30 16 8 C 0.56 15.67 7.72 86.79 0.67 16.34 16 9 O -0.55 -17.50 13.15 -3.88 -0.05 -17.55 16 10 N -0.71 -18.22 4.29 -441.96 -1.90 -20.12 16 11 C 0.16 4.08 3.12 45.71 0.14 4.22 16 12 H 0.08 2.36 7.57 -2.38 -0.02 2.34 16 13 C -0.12 -2.68 6.59 31.32 0.21 -2.47 16 14 C -0.11 -2.38 6.83 31.67 0.22 -2.17 16 15 C -0.11 -3.07 6.19 31.89 0.20 -2.87 16 16 C -0.10 -3.08 2.85 -9.72 -0.03 -3.11 16 17 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 18 C 0.17 6.62 4.73 86.38 0.41 7.03 16 19 N -0.75 -37.42 5.49 -343.45 -1.89 -39.31 16 20 C -0.33 -18.83 9.99 84.03 0.84 -17.99 16 21 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 22 C -0.10 -5.91 5.50 84.86 0.47 -5.44 16 23 N -0.97 -60.81 13.70 21.65 0.30 -60.51 16 24 Si 1.13 52.04 29.92 68.60 2.05 54.09 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 28 C -0.03 -0.74 5.97 -19.30 -0.12 -0.86 16 29 C -0.10 -2.41 8.70 71.24 0.62 -1.79 16 30 H 0.07 0.39 7.67 -2.39 -0.02 0.38 16 31 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.36 7.67 -2.39 -0.02 0.34 16 33 H 0.19 2.25 6.30 -2.91 -0.02 2.23 16 34 H 0.17 3.57 6.46 -2.91 -0.02 3.55 16 35 H 0.41 9.93 4.66 -92.71 -0.43 9.49 16 36 H 0.07 1.53 7.92 -2.39 -0.02 1.52 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.83 7.97 -2.38 -0.02 1.81 16 42 H 0.03 0.98 6.41 -2.39 -0.02 0.97 16 43 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.36 18.63 6.47 -92.71 -0.60 18.03 16 45 H 0.25 15.16 6.77 -92.71 -0.63 14.54 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.08 1.57 7.44 -2.39 -0.02 1.55 16 48 H 0.08 2.17 5.95 -2.39 -0.01 2.16 16 Total: -1.00 -72.76 381.48 2.27 -70.49 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: 0.11 Total: 38.00 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 6.55 Total: -5.67 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -5.50 Total: -133.18 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.94 Total: -23.74 kcal Atomic # 14 Polarization: 52.04 SS G_CDS: 2.05 Total: 54.09 kcal Total: -72.76 2.27 -70.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732617576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.885 kcal (2) G-P(sol) polarization free energy of solvation -72.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds