Wall clock time and date at job start Tue Mar 31 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40199 * 120.36914 * 2 1 4 4 C 1.35346 * 119.94909 * 179.97438 * 3 2 1 5 5 N 1.35764 * 120.70338 * 0.02562 * 4 3 2 6 6 C 1.46501 * 119.62583 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47273 * 90.00146 * 6 5 4 8 8 O 1.21278 * 119.99987 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99730 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99863 * 179.97438 * 9 7 6 11 11 H 1.09007 * 110.42957 * 32.46283 * 10 9 7 12 12 C 1.55238 * 110.46889 * 269.81156 * 10 9 7 13 13 C 1.54894 * 102.58338 * 203.39139 * 12 10 9 14 14 C 1.54266 * 104.31305 * 37.93170 * 13 12 10 15 15 C 1.53869 * 106.60031 * 336.32486 * 14 13 12 16 16 H 1.08999 * 110.04012 * 119.28327 * 15 14 13 17 17 C 1.53007 * 110.03216 * 240.71686 * 15 14 13 18 18 N 1.46498 * 109.46762 * 293.54374 * 17 15 14 19 19 C 1.36934 * 120.00199 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00397 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00006 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99963 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47110 * 60.00116 * 23 21 19 25 25 H 1.48504 * 109.46849 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47143 * 299.99875 * 23 21 19 27 27 C 1.34662 * 120.74725 * 0.25539 * 5 4 3 28 28 O 1.22069 * 119.98131 * 179.70279 * 27 5 4 29 29 C 1.36399 * 120.36549 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47402 * 89.99916 * 1 2 3 31 31 H 1.08997 * 109.47156 * 209.99835 * 1 2 3 32 32 H 1.09001 * 109.47248 * 329.99513 * 1 2 3 33 33 H 1.07997 * 120.02191 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.64767 * 180.02562 * 4 3 2 35 35 H 1.08997 * 109.46701 * 329.99861 * 6 5 4 36 36 H 1.09003 * 109.46900 * 210.00592 * 6 5 4 37 37 H 0.96996 * 120.00365 * 359.97438 * 9 7 6 38 38 H 1.08996 * 110.89448 * 85.10703 * 12 10 9 39 39 H 1.08993 * 110.76342 * 321.62368 * 12 10 9 40 40 H 1.09002 * 110.48891 * 279.18596 * 13 12 10 41 41 H 1.08998 * 110.48494 * 156.67683 * 13 12 10 42 42 H 1.09001 * 110.03084 * 95.60669 * 14 13 12 43 43 H 1.08995 * 110.03255 * 217.03136 * 14 13 12 44 44 H 1.09004 * 109.47161 * 53.53778 * 17 15 14 45 45 H 1.08998 * 109.47608 * 173.54594 * 17 15 14 46 46 H 0.97003 * 120.00510 * 0.02562 * 18 17 15 47 47 H 0.97003 * 120.00420 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.35095 * 0.04400 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0273 0.0005 6 6 5.7187 0.0441 0.0005 7 6 6.2211 0.0499 1.4213 8 8 5.4330 0.0403 2.3431 9 7 7.5460 0.0656 1.6675 10 6 8.0344 0.0717 3.0487 11 1 7.3552 -0.4845 3.6949 12 6 8.2027 1.5283 3.5585 13 6 9.2426 1.3699 4.6955 14 6 10.2245 0.3031 4.1683 15 6 9.4563 -0.5222 3.1213 16 1 9.9447 -0.4412 2.1502 17 6 9.3904 -1.9881 3.5548 18 7 10.7375 -2.5637 3.5363 19 6 10.9275 -3.8729 3.8898 20 1 10.0844 -4.4810 4.1828 21 6 12.2038 -4.4185 3.8718 22 7 13.2314 -3.6774 3.5153 23 14 12.4629 -6.2047 4.3534 24 1 11.6851 -7.0811 3.4413 25 1 13.9060 -6.5403 4.2521 26 1 12.0038 -6.4123 5.7503 27 6 3.6016 -1.1508 -0.0051 28 8 4.2312 -2.1966 -0.0105 29 6 2.1965 -1.1769 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1344 0.0009 35 1 6.0717 0.9382 -0.5133 36 1 6.0922 -0.8416 -0.5134 37 1 8.1763 0.0728 0.9302 38 1 7.2609 1.9152 3.9477 39 1 8.5891 2.1720 2.7684 40 1 8.7591 1.0249 5.6095 41 1 9.7615 2.3120 4.8718 42 1 11.0858 0.7848 3.7054 43 1 10.5505 -0.3405 4.9853 44 1 8.9825 -2.0506 4.5637 45 1 8.7494 -2.5415 2.8687 46 1 11.4949 -2.0173 3.2743 47 1 14.1232 -4.0587 3.5023 48 1 1.6682 -2.1188 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732624021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:33 Heat of formation + Delta-G solvation = -62.887566 kcal Electronic energy + Delta-G solvation = -28400.800766 eV Core-core repulsion = 24454.764595 eV Total energy + Delta-G solvation = -3946.036171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.52800 -40.93323 -39.23603 -38.11632 -36.40293 -36.17140 -34.85059 -33.32234 -31.51512 -30.56150 -30.19214 -29.00410 -27.38644 -26.26532 -24.65237 -24.06330 -22.82960 -21.93517 -21.61856 -20.73310 -19.37134 -18.55927 -18.54874 -18.40383 -17.41709 -17.01559 -16.65525 -16.43041 -16.19908 -16.09033 -15.44297 -15.23383 -15.16266 -15.01001 -14.95900 -14.69005 -14.27158 -14.16315 -13.68251 -13.52888 -13.35206 -13.19287 -13.17442 -12.97367 -12.86837 -12.80605 -12.46591 -12.43354 -12.20652 -11.97215 -11.91370 -11.76509 -11.67571 -11.33835 -11.27313 -11.10676 -10.97942 -10.57922 -10.11041 -9.05232 -8.98807 -7.99947 -5.28620 -0.11651 0.92017 1.41529 1.43167 1.45976 1.48672 1.52341 2.15298 2.51627 2.69750 3.32468 3.42269 3.58408 3.64322 3.68438 3.74814 3.85870 3.88823 4.08347 4.17732 4.17824 4.34334 4.38218 4.40492 4.44637 4.46991 4.51404 4.63535 4.72532 4.79178 4.83331 4.89702 4.93313 5.00374 5.10810 5.11516 5.13191 5.24564 5.25362 5.33599 5.42856 5.45724 5.49227 5.56365 5.67335 6.05699 6.22594 6.42357 6.97032 7.11210 7.29601 8.02873 8.30287 9.22716 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.002482 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.044218 B =11276.999320 C =12702.052190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.034 3.966 3 C -0.231 4.231 4 C 0.142 3.858 5 N -0.483 5.483 6 C 0.071 3.929 7 C 0.500 3.500 8 O -0.576 6.576 9 N -0.703 5.703 10 C 0.151 3.849 11 H 0.063 0.937 12 C -0.114 4.114 13 C -0.115 4.115 14 C -0.112 4.112 15 C -0.090 4.090 16 H 0.086 0.914 17 C 0.161 3.839 18 N -0.737 5.737 19 C -0.253 4.253 20 H 0.064 0.936 21 C -0.068 4.068 22 N -0.963 5.963 23 Si 0.971 3.029 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.279 1.279 27 C 0.499 3.501 28 O -0.615 6.615 29 C -0.296 4.296 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.185 0.815 34 H 0.208 0.792 35 H 0.183 0.817 36 H 0.121 0.879 37 H 0.417 0.583 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.009 0.991 45 H 0.002 0.998 46 H 0.379 0.621 47 H 0.254 0.746 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.177 22.161 -10.793 33.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.030 3.970 3 C -0.253 4.253 4 C 0.016 3.984 5 N -0.192 5.192 6 C -0.054 4.054 7 C 0.285 3.715 8 O -0.455 6.455 9 N -0.355 5.355 10 C 0.045 3.955 11 H 0.081 0.919 12 C -0.153 4.153 13 C -0.153 4.153 14 C -0.151 4.151 15 C -0.110 4.110 16 H 0.105 0.895 17 C 0.034 3.966 18 N -0.380 5.380 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.261 4.261 22 N -0.613 5.613 23 Si 0.800 3.200 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.206 1.206 27 C 0.305 3.695 28 O -0.504 6.504 29 C -0.317 4.317 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.203 0.797 34 H 0.224 0.776 35 H 0.201 0.799 36 H 0.139 0.861 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.027 0.973 45 H 0.019 0.981 46 H 0.211 0.789 47 H 0.062 0.938 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.352 21.324 -10.091 32.498 hybrid contribution 1.054 -1.785 0.163 2.079 sum -21.298 19.539 -9.927 30.560 Atomic orbital electron populations 1.21041 0.88002 1.04526 1.04368 1.20654 0.98522 0.92099 0.85688 1.21077 0.92491 0.99701 1.12031 1.22754 0.94406 0.89635 0.91578 1.45074 1.07916 1.07481 1.58688 1.22039 0.79143 1.09883 0.94339 1.21214 0.82816 0.75400 0.92020 1.90727 1.56340 1.51041 1.47418 1.45874 1.06572 1.73954 1.09124 1.21808 0.93527 0.97511 0.82615 0.91905 1.22804 0.99277 0.94484 0.98716 1.22288 0.96211 0.99084 0.97736 1.22065 0.98402 0.96907 0.97676 1.22047 0.95043 0.93323 1.00567 0.89527 1.20805 0.86601 0.92728 0.96422 1.42430 1.04222 1.09840 1.81507 1.19517 0.92964 0.89026 1.37000 0.91760 1.25508 0.95358 1.02269 1.02997 1.69778 0.98732 1.37074 1.55719 0.85254 0.76495 0.80080 0.78184 1.20774 1.21392 1.20552 1.17565 0.90383 0.82775 0.78792 1.90935 1.70305 1.32508 1.56608 1.21874 0.91547 1.00848 1.17464 0.88333 0.91187 0.88533 0.79733 0.77567 0.79945 0.86112 0.74512 0.91293 0.88735 0.92290 0.89168 0.90667 0.93513 0.97335 0.98050 0.78871 0.93752 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.03 71.23 0.71 -0.28 16 2 C 0.03 0.53 5.89 -19.82 -0.12 0.41 16 3 C -0.23 -2.38 9.71 22.08 0.21 -2.17 16 4 C 0.14 1.63 10.28 83.42 0.86 2.49 16 5 N -0.48 -9.97 2.07 -655.05 -1.36 -11.32 16 6 C 0.07 1.20 5.82 85.63 0.50 1.69 16 7 C 0.50 12.34 7.89 87.66 0.69 13.03 16 8 O -0.58 -19.71 16.08 -3.02 -0.05 -19.76 16 9 N -0.70 -15.49 5.16 -436.87 -2.25 -17.75 16 10 C 0.15 4.08 2.76 46.19 0.13 4.20 16 11 H 0.06 2.16 7.26 -2.38 -0.02 2.14 16 12 C -0.11 -2.36 6.61 32.01 0.21 -2.15 16 13 C -0.12 -2.58 6.82 31.67 0.22 -2.37 16 14 C -0.11 -3.28 6.13 31.32 0.19 -3.09 16 15 C -0.09 -2.83 2.71 -10.07 -0.03 -2.86 16 16 H 0.09 2.55 7.73 -2.39 -0.02 2.53 16 17 C 0.16 6.99 5.29 86.38 0.46 7.45 16 18 N -0.74 -38.85 5.34 -343.44 -1.83 -40.69 16 19 C -0.25 -14.93 9.99 84.03 0.84 -14.09 16 20 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 22 N -0.96 -59.33 13.06 21.65 0.28 -59.04 16 23 Si 0.97 47.80 29.55 68.60 2.03 49.83 16 24 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 27 C 0.50 15.08 7.40 84.82 0.63 15.70 16 28 O -0.62 -24.92 16.64 -5.54 -0.09 -25.02 16 29 C -0.30 -7.22 9.65 22.40 0.22 -7.00 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 32 H 0.10 0.39 8.10 -2.39 -0.02 0.38 16 33 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.21 0.33 8.04 -2.91 -0.02 0.30 16 35 H 0.18 0.70 8.01 -2.39 -0.02 0.68 16 36 H 0.12 2.39 7.38 -2.39 -0.02 2.37 16 37 H 0.42 6.61 8.37 -92.71 -0.78 5.84 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.05 1.68 7.58 -2.39 -0.02 1.66 16 44 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.38 20.49 7.50 -92.71 -0.70 19.79 16 47 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -90.57 397.15 2.41 -88.16 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.50 Total: 28.19 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.19 Total: 7.40 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -5.16 Total: -128.80 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.14 Total: -44.78 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -90.57 2.41 -88.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732624021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.273 kcal (2) G-P(sol) polarization free energy of solvation -90.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds