Wall clock time and date at job start Tue Mar 31 2020 17:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38083 * 119.58606 * 2 1 4 4 C 1.38791 * 119.28941 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.75795 * 180.02562 * 4 3 2 6 6 C 1.38422 * 118.48105 * 359.97438 * 4 3 2 7 7 C 1.50707 * 120.43895 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.46835 * 89.99856 * 7 6 4 9 9 O 1.21283 * 120.00088 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00259 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46740 * 35.00241 * 11 10 8 13 13 C 1.52992 * 109.46791 * 155.00059 * 11 10 8 14 14 N 1.46494 * 109.47578 * 305.00035 * 13 11 10 15 15 C 1.36939 * 120.00372 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99433 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00331 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99767 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46747 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46668 * 120.00061 * 19 17 15 22 22 H 1.48494 * 109.47242 * 240.00189 * 19 17 15 23 23 C 1.53002 * 109.46979 * 275.00454 * 11 10 8 24 24 C 1.52995 * 117.49690 * 128.74677 * 23 11 10 25 25 C 1.52995 * 117.50175 * 60.08693 * 23 11 10 26 26 C 1.38867 * 119.11515 * 359.97438 * 6 4 3 27 27 O 1.35678 * 119.68312 * 180.02562 * 26 6 4 28 28 N 1.31934 * 119.58087 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47344 * 270.02711 * 1 2 3 30 30 H 1.08999 * 109.46982 * 30.02432 * 1 2 3 31 31 H 1.09005 * 109.47141 * 150.01946 * 1 2 3 32 32 H 1.08003 * 120.35801 * 359.97282 * 3 2 1 33 33 H 1.09008 * 109.46468 * 90.00382 * 5 4 3 34 34 H 1.08995 * 109.46991 * 209.99827 * 5 4 3 35 35 H 1.08998 * 109.47311 * 330.00266 * 5 4 3 36 36 H 1.08998 * 109.46680 * 209.99779 * 7 6 4 37 37 H 1.09006 * 109.46938 * 330.00222 * 7 6 4 38 38 H 0.96997 * 119.99557 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.47187 * 65.00631 * 13 11 10 40 40 H 1.09000 * 109.47058 * 184.99699 * 13 11 10 41 41 H 0.96995 * 119.99946 * 359.97438 * 14 13 11 42 42 H 0.96996 * 119.99339 * 180.02562 * 18 17 15 43 43 H 1.08999 * 115.54439 * 274.41843 * 23 11 10 44 44 H 1.08998 * 117.50237 * 0.02562 * 24 23 11 45 45 H 1.08999 * 117.49579 * 145.01900 * 24 23 11 46 46 H 1.08998 * 117.50291 * 214.98069 * 25 23 11 47 47 H 1.09006 * 117.49844 * 359.97436 * 25 23 11 48 48 H 0.96710 * 114.00330 * 269.99887 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2008 0.0000 4 6 3.5766 1.1936 0.0005 5 6 4.3540 2.4846 0.0011 6 6 4.2304 -0.0265 0.0016 7 6 5.7363 -0.0858 0.0016 8 6 6.2382 -0.1043 1.4224 9 8 5.4506 -0.0729 2.3442 10 7 7.5623 -0.1567 1.6689 11 6 8.0502 -0.1752 3.0501 12 1 7.3548 -0.7371 3.6735 13 6 9.4274 -0.8399 3.0955 14 7 9.3482 -2.1698 2.4861 15 6 10.4660 -2.9574 2.4135 16 1 11.4062 -2.5980 2.8052 17 6 10.3909 -4.2177 1.8366 18 7 9.2452 -4.6555 1.3588 19 14 11.9160 -5.2918 1.7369 20 1 13.0674 -4.5737 2.3399 21 1 11.6794 -6.5571 2.4775 22 1 12.2132 -5.5988 0.3148 23 6 8.1585 1.2590 3.5720 24 6 7.4903 1.5756 4.9114 25 6 6.8784 2.0961 3.6084 26 6 3.4802 -1.1951 0.0026 27 8 4.1091 -2.3973 0.0042 28 7 2.1583 -1.1474 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5136 32 1 1.6478 2.1356 -0.0004 33 1 4.5411 2.7955 1.0291 34 1 5.3040 2.3368 -0.5123 35 1 3.7792 3.2551 -0.5127 36 1 6.0643 -0.9898 -0.5114 37 1 6.1344 0.7888 -0.5130 38 1 8.1921 -0.1821 0.9316 39 1 10.1436 -0.2300 2.5450 40 1 9.7515 -0.9339 4.1320 41 1 8.5038 -2.4927 2.1347 42 1 9.1927 -5.5363 0.9560 43 1 9.0905 1.7744 3.3401 44 1 6.9739 0.7622 5.4210 45 1 7.9825 2.2998 5.5606 46 1 6.9682 3.1624 3.4009 47 1 5.9590 1.6252 3.2602 48 1 4.2918 -2.7468 -0.8788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733178196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:05 Heat of formation + Delta-G solvation = -11.075287 kcal Electronic energy + Delta-G solvation = -29298.133476 eV Core-core repulsion = 25354.344055 eV Total energy + Delta-G solvation = -3943.789422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90192 -39.55336 -37.26467 -37.13993 -35.00731 -34.77003 -33.34297 -31.96626 -31.20243 -30.22736 -28.11516 -27.76337 -25.80833 -23.98095 -22.79542 -22.15811 -21.52032 -21.27246 -20.24646 -19.92677 -18.31102 -17.36710 -17.25874 -16.69639 -16.24637 -15.49890 -15.33370 -15.11959 -14.91491 -14.36332 -14.28019 -13.87669 -13.63040 -13.54603 -13.23689 -13.10005 -13.02520 -13.01890 -12.84295 -12.43974 -12.13405 -11.99437 -11.85555 -11.64733 -11.60924 -11.47871 -11.13910 -11.00904 -10.89235 -10.82640 -10.16168 -10.10606 -9.91874 -9.69617 -9.61372 -9.41651 -9.36615 -8.92069 -8.63297 -8.56885 -6.95681 -5.77552 -3.07635 0.96448 1.16305 2.97276 3.34355 3.41917 3.47754 3.50009 3.54796 3.74459 4.17940 4.38218 4.48777 4.55563 4.78126 4.78891 4.90760 5.05290 5.12447 5.17662 5.20825 5.23842 5.29886 5.30831 5.42830 5.44182 5.51192 5.56038 5.58881 5.65153 5.72644 5.80223 5.85134 5.92942 5.93665 5.99281 6.09141 6.21392 6.24211 6.37846 6.50958 6.52524 6.53055 6.70208 6.98637 7.57995 7.68574 7.92165 7.96489 8.39901 8.61590 9.51847 10.07754 10.43414 11.44468 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.003448 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.431767 B = 8119.381415 C = 9916.912411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.148 3.852 3 C -0.187 4.187 4 C -0.013 4.013 5 C -0.119 4.119 6 C -0.133 4.133 7 C -0.097 4.097 8 C 0.524 3.476 9 O -0.538 6.538 10 N -0.707 5.707 11 C 0.169 3.831 12 H 0.086 0.914 13 C 0.149 3.851 14 N -0.731 5.731 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.928 5.928 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.161 4.161 24 C -0.172 4.172 25 C -0.186 4.186 26 C 0.336 3.664 27 O -0.471 6.471 28 N -0.508 5.508 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.403 0.597 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.387 0.613 42 H 0.255 0.745 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.117 0.883 48 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.648 17.325 -5.766 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 C -0.207 4.207 4 C -0.021 4.021 5 C -0.175 4.175 6 C -0.136 4.136 7 C -0.138 4.138 8 C 0.311 3.689 9 O -0.416 6.416 10 N -0.358 5.358 11 C 0.065 3.935 12 H 0.104 0.896 13 C 0.020 3.980 14 N -0.376 5.376 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.208 4.208 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.181 4.181 24 C -0.210 4.210 25 C -0.222 4.222 26 C 0.157 3.843 27 O -0.277 6.277 28 N -0.228 5.228 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.153 0.847 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.238 0.762 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.221 0.779 42 H 0.065 0.935 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.135 0.865 48 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -13.463 16.511 -4.482 21.770 hybrid contribution 1.525 -0.267 -0.905 1.793 sum -11.938 16.243 -5.387 20.866 Atomic orbital electron populations 1.20720 0.88755 1.03325 1.03202 1.20932 0.96609 0.87301 0.94100 1.21719 0.93885 0.99183 1.05932 1.20011 0.93650 0.94791 0.93630 1.20886 0.99864 0.93411 1.03360 1.20141 0.95568 0.92790 1.05143 1.20502 0.91631 1.05431 0.96216 1.20173 0.82477 0.75752 0.90539 1.90622 1.55391 1.49574 1.45966 1.45912 1.06643 1.74151 1.09052 1.20769 0.97340 0.92836 0.82584 0.89569 1.20903 0.92033 0.87788 0.97231 1.42359 1.10852 1.13011 1.71405 1.19247 0.89270 0.96287 1.32541 0.91139 1.24754 0.96916 0.97704 1.01438 1.69687 1.23591 1.19256 1.45114 0.86133 0.82280 0.80645 0.77195 1.20596 1.21873 1.21888 1.22648 0.97051 0.97029 1.01349 1.22887 1.04058 1.03459 0.90551 1.23256 0.98678 0.98714 1.01593 1.18913 0.86503 0.85116 0.93760 1.84924 1.76308 1.33072 1.33427 1.66990 1.09649 1.30595 1.15615 0.90329 0.90670 0.90465 0.84746 0.90018 0.90788 0.90984 0.87402 0.87973 0.76230 0.95814 0.94843 0.77917 0.93543 0.87959 0.88809 0.89269 0.90017 0.86517 0.74394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 36.01 0.37 -0.51 16 2 C 0.15 1.82 6.78 -82.61 -0.56 1.26 16 3 C -0.19 -2.03 9.44 -39.43 -0.37 -2.41 16 4 C -0.01 -0.15 5.91 -104.35 -0.62 -0.77 16 5 C -0.12 -1.02 9.67 36.00 0.35 -0.68 16 6 C -0.13 -1.80 4.40 -104.32 -0.46 -2.26 16 7 C -0.10 -1.22 5.25 -29.03 -0.15 -1.37 16 8 C 0.52 8.37 7.16 -10.99 -0.08 8.29 16 9 O -0.54 -10.35 13.06 5.55 0.07 -10.28 16 10 N -0.71 -11.08 4.50 -53.81 -0.24 -11.32 16 11 C 0.17 2.88 2.43 -67.93 -0.17 2.72 16 12 H 0.09 1.72 7.33 -51.93 -0.38 1.34 16 13 C 0.15 2.91 5.80 -4.05 -0.02 2.88 16 14 N -0.73 -18.09 5.43 -59.92 -0.33 -18.41 16 15 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 19 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 C -0.16 -2.28 5.36 -90.62 -0.49 -2.77 16 24 C -0.17 -2.31 10.18 -26.70 -0.27 -2.59 16 25 C -0.19 -2.52 9.74 -26.70 -0.26 -2.78 16 26 C 0.34 5.19 7.72 -17.13 -0.13 5.05 16 27 O -0.47 -7.34 12.62 -18.73 -0.24 -7.57 16 28 N -0.51 -7.77 10.30 -9.55 -0.10 -7.87 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.07 0.57 6.08 -51.93 -0.32 0.25 16 35 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.11 1.31 7.55 -51.93 -0.39 0.91 16 37 H 0.10 0.95 6.07 -51.93 -0.32 0.64 16 38 H 0.40 5.89 8.60 -40.82 -0.35 5.54 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.39 10.27 7.33 -40.82 -0.30 9.97 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.10 1.34 8.11 -51.93 -0.42 0.92 16 44 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.12 1.86 5.02 -51.93 -0.26 1.60 16 48 H 0.40 4.08 9.06 45.56 0.41 4.49 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -35.59 395.94 -8.78 -44.38 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -6.51 Total: 18.18 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.11 Total: -3.17 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 0.06 Total: -64.68 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.16 Total: -17.85 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.59 -8.78 -44.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733178196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.301 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds