Wall clock time and date at job start Tue Mar 31 2020 17:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38083 * 119.58606 * 2 1 4 4 C 1.38791 * 119.28941 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.75795 * 180.02562 * 4 3 2 6 6 C 1.38422 * 118.48105 * 359.97438 * 4 3 2 7 7 C 1.50707 * 120.43895 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.46835 * 89.99856 * 7 6 4 9 9 O 1.21283 * 120.00088 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00259 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46740 * 35.00241 * 11 10 8 13 13 C 1.52992 * 109.46791 * 155.00059 * 11 10 8 14 14 N 1.46494 * 109.47578 * 305.00035 * 13 11 10 15 15 C 1.36939 * 120.00372 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99433 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00331 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99767 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46747 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46668 * 120.00061 * 19 17 15 22 22 H 1.48494 * 109.47242 * 240.00189 * 19 17 15 23 23 C 1.53002 * 109.46979 * 275.00454 * 11 10 8 24 24 C 1.52995 * 117.49690 * 128.74677 * 23 11 10 25 25 C 1.52995 * 117.50175 * 60.08693 * 23 11 10 26 26 C 1.38867 * 119.11515 * 359.97438 * 6 4 3 27 27 O 1.35678 * 119.68312 * 180.02562 * 26 6 4 28 28 N 1.31934 * 119.58087 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47344 * 270.02711 * 1 2 3 30 30 H 1.08999 * 109.46982 * 30.02432 * 1 2 3 31 31 H 1.09005 * 109.47141 * 150.01946 * 1 2 3 32 32 H 1.08003 * 120.35801 * 359.97282 * 3 2 1 33 33 H 1.09008 * 109.46468 * 90.00382 * 5 4 3 34 34 H 1.08995 * 109.46991 * 209.99827 * 5 4 3 35 35 H 1.08998 * 109.47311 * 330.00266 * 5 4 3 36 36 H 1.08998 * 109.46680 * 209.99779 * 7 6 4 37 37 H 1.09006 * 109.46938 * 330.00222 * 7 6 4 38 38 H 0.96997 * 119.99557 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.47187 * 65.00631 * 13 11 10 40 40 H 1.09000 * 109.47058 * 184.99699 * 13 11 10 41 41 H 0.96995 * 119.99946 * 359.97438 * 14 13 11 42 42 H 0.96996 * 119.99339 * 180.02562 * 18 17 15 43 43 H 1.08999 * 115.54439 * 274.41843 * 23 11 10 44 44 H 1.08998 * 117.50237 * 0.02562 * 24 23 11 45 45 H 1.08999 * 117.49579 * 145.01900 * 24 23 11 46 46 H 1.08998 * 117.50291 * 214.98069 * 25 23 11 47 47 H 1.09006 * 117.49844 * 359.97436 * 25 23 11 48 48 H 0.96710 * 114.00330 * 269.99887 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2008 0.0000 4 6 3.5766 1.1936 0.0005 5 6 4.3540 2.4846 0.0011 6 6 4.2304 -0.0265 0.0016 7 6 5.7363 -0.0858 0.0016 8 6 6.2382 -0.1043 1.4224 9 8 5.4506 -0.0729 2.3442 10 7 7.5623 -0.1567 1.6689 11 6 8.0502 -0.1752 3.0501 12 1 7.3548 -0.7371 3.6735 13 6 9.4274 -0.8399 3.0955 14 7 9.3482 -2.1698 2.4861 15 6 10.4660 -2.9574 2.4135 16 1 11.4062 -2.5980 2.8052 17 6 10.3909 -4.2177 1.8366 18 7 9.2452 -4.6555 1.3588 19 14 11.9160 -5.2918 1.7369 20 1 13.0674 -4.5737 2.3399 21 1 11.6794 -6.5571 2.4775 22 1 12.2132 -5.5988 0.3148 23 6 8.1585 1.2590 3.5720 24 6 7.4903 1.5756 4.9114 25 6 6.8784 2.0961 3.6084 26 6 3.4802 -1.1951 0.0026 27 8 4.1091 -2.3973 0.0042 28 7 2.1583 -1.1474 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5136 32 1 1.6478 2.1356 -0.0004 33 1 4.5411 2.7955 1.0291 34 1 5.3040 2.3368 -0.5123 35 1 3.7792 3.2551 -0.5127 36 1 6.0643 -0.9898 -0.5114 37 1 6.1344 0.7888 -0.5130 38 1 8.1921 -0.1821 0.9316 39 1 10.1436 -0.2300 2.5450 40 1 9.7515 -0.9339 4.1320 41 1 8.5038 -2.4927 2.1347 42 1 9.1927 -5.5363 0.9560 43 1 9.0905 1.7744 3.3401 44 1 6.9739 0.7622 5.4210 45 1 7.9825 2.2998 5.5606 46 1 6.9682 3.1624 3.4009 47 1 5.9590 1.6252 3.2602 48 1 4.2918 -2.7468 -0.8788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733178196.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:04 Heat of formation + Delta-G solvation = -38.685552 kcal Electronic energy + Delta-G solvation = -29299.330747 eV Core-core repulsion = 25354.344055 eV Total energy + Delta-G solvation = -3944.986692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90616 -40.79350 -38.44787 -38.27053 -36.60959 -35.72420 -34.93700 -33.09998 -32.81153 -31.28832 -29.58893 -28.58967 -26.85728 -25.81168 -23.83254 -23.29420 -23.05180 -22.28424 -21.37891 -21.19323 -19.38149 -19.24377 -18.24872 -18.03942 -17.46596 -16.71946 -16.59471 -16.44489 -16.18503 -15.78787 -15.29886 -15.18111 -15.04060 -14.74867 -14.43337 -14.38802 -14.14484 -13.88489 -13.81022 -13.59917 -13.18750 -13.17797 -12.86795 -12.82884 -12.79371 -12.67813 -12.53707 -12.43041 -12.37986 -12.20787 -12.03540 -11.84396 -11.25367 -11.09637 -10.99457 -10.78864 -10.40395 -10.33402 -9.89004 -9.59624 -9.01190 -7.93427 -5.23629 0.01178 0.24122 1.47771 1.49161 1.58781 1.73094 2.20003 2.55552 2.59328 2.75062 3.06367 3.40491 3.47515 3.59551 3.71635 3.86068 3.90152 3.96752 4.05652 4.13779 4.18662 4.25097 4.37059 4.41254 4.48087 4.50522 4.59926 4.64704 4.70709 4.75649 4.77592 4.82229 4.87657 4.91519 5.02704 5.05356 5.12445 5.14155 5.25561 5.29886 5.36266 5.41023 5.50798 5.63473 5.70600 6.26540 6.61349 6.67582 7.01008 7.33859 7.36978 8.06884 8.31047 9.29365 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.003448 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.431767 B = 8119.381415 C = 9916.912411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.131 3.869 3 C -0.183 4.183 4 C -0.017 4.017 5 C -0.116 4.116 6 C -0.147 4.147 7 C -0.089 4.089 8 C 0.522 3.478 9 O -0.574 6.574 10 N -0.704 5.704 11 C 0.180 3.820 12 H 0.048 0.952 13 C 0.150 3.850 14 N -0.743 5.743 15 C -0.243 4.243 16 H 0.079 0.921 17 C -0.074 4.074 18 N -0.966 5.966 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.299 1.299 22 H -0.291 1.291 23 C -0.161 4.161 24 C -0.172 4.172 25 C -0.176 4.176 26 C 0.305 3.695 27 O -0.498 6.498 28 N -0.544 5.544 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.172 0.828 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.409 0.591 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.124 0.876 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 20.491 -6.286 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.006 4.006 3 C -0.203 4.203 4 C -0.025 4.025 5 C -0.172 4.172 6 C -0.151 4.151 7 C -0.129 4.129 8 C 0.310 3.690 9 O -0.454 6.454 10 N -0.354 5.354 11 C 0.075 3.925 12 H 0.066 0.934 13 C 0.024 3.976 14 N -0.386 5.386 15 C -0.375 4.375 16 H 0.097 0.903 17 C -0.266 4.266 18 N -0.617 5.617 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.227 1.227 22 H -0.218 1.218 23 C -0.181 4.181 24 C -0.209 4.209 25 C -0.213 4.213 26 C 0.127 3.873 27 O -0.307 6.307 28 N -0.265 5.265 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.090 0.910 32 H 0.189 0.811 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.156 0.844 38 H 0.245 0.755 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.142 0.858 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.127 0.873 47 H 0.111 0.889 48 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -12.733 19.716 -5.004 23.998 hybrid contribution 1.235 -1.203 -0.691 1.858 sum -11.498 18.512 -5.696 22.524 Atomic orbital electron populations 1.20822 0.86355 1.04682 1.03823 1.21645 0.98340 0.87189 0.93402 1.22154 0.93856 1.00089 1.04151 1.20470 0.94420 0.95285 0.92295 1.20961 1.00431 0.92366 1.03471 1.20262 0.95841 0.93063 1.05921 1.20503 0.91395 1.07042 0.93983 1.20738 0.82020 0.74672 0.91619 1.90609 1.56185 1.51181 1.47437 1.45870 1.06919 1.73954 1.08662 1.20479 0.94765 0.94255 0.83015 0.93406 1.21034 0.94025 0.85857 0.96723 1.42533 1.09651 1.14744 1.71661 1.19653 0.90175 0.96547 1.31099 0.90309 1.25560 0.99677 0.99295 1.02073 1.69852 1.25723 1.19383 1.46698 0.85088 0.79409 0.78422 0.76891 1.18882 1.22685 1.21847 1.22544 0.98402 0.95161 1.01966 1.22962 1.03829 1.03431 0.90694 1.23198 0.97088 0.99783 1.01185 1.19229 0.87088 0.85424 0.95520 1.84865 1.76631 1.34010 1.35175 1.66975 1.09912 1.32533 1.17071 0.89915 0.87406 0.91033 0.81062 0.90565 0.89756 0.88179 0.87483 0.84359 0.75497 0.93786 0.95047 0.79420 0.94163 0.85799 0.90804 0.86584 0.87259 0.88936 0.72772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 10.17 71.24 0.72 -0.85 16 2 C 0.13 3.16 6.78 42.51 0.29 3.45 16 3 C -0.18 -3.61 9.44 22.37 0.21 -3.40 16 4 C -0.02 -0.37 5.91 -19.69 -0.12 -0.49 16 5 C -0.12 -1.65 9.67 71.24 0.69 -0.96 16 6 C -0.15 -4.01 4.40 -19.67 -0.09 -4.09 16 7 C -0.09 -2.22 5.25 29.10 0.15 -2.06 16 8 C 0.52 16.87 7.16 87.65 0.63 17.50 16 9 O -0.57 -22.87 13.06 -3.04 -0.04 -22.91 16 10 N -0.70 -22.05 4.50 -442.54 -1.99 -24.04 16 11 C 0.18 6.15 2.43 44.99 0.11 6.26 16 12 H 0.05 2.01 7.33 -2.39 -0.02 1.99 16 13 C 0.15 5.81 5.80 86.38 0.50 6.31 16 14 N -0.74 -37.12 5.43 -343.47 -1.87 -38.98 16 15 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 16 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 18 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 19 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 C -0.16 -4.30 5.36 -10.80 -0.06 -4.36 16 24 C -0.17 -4.38 10.18 30.62 0.31 -4.06 16 25 C -0.18 -4.45 9.74 30.62 0.30 -4.15 16 26 C 0.31 9.89 7.72 84.78 0.65 10.55 16 27 O -0.50 -16.79 12.62 -89.95 -1.14 -17.93 16 28 N -0.54 -17.27 10.30 -296.99 -3.06 -20.33 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.11 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 32 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.08 1.01 6.08 -2.39 -0.01 1.00 16 35 H 0.10 0.87 8.10 -2.39 -0.02 0.85 16 36 H 0.11 2.66 7.55 -2.39 -0.02 2.65 16 37 H 0.14 2.31 6.07 -2.38 -0.01 2.29 16 38 H 0.41 11.73 8.60 -92.71 -0.80 10.94 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.37 20.46 7.33 -92.71 -0.68 19.78 16 42 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.12 2.82 8.11 -2.39 -0.02 2.80 16 44 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 45 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.09 2.91 5.02 -2.38 -0.01 2.89 16 48 H 0.41 9.56 9.06 -74.05 -0.67 8.89 16 Total: -1.00 -79.80 395.94 -1.30 -81.10 By element: Atomic # 1 Polarization: 51.82 SS G_CDS: -1.13 Total: 50.69 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.61 Total: 3.43 kcal Atomic # 7 Polarization: -135.63 SS G_CDS: -6.63 Total: -142.27 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.18 Total: -40.84 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -79.80 -1.30 -81.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733178196.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.414 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds