Wall clock time and date at job start Tue Mar 31 2020 17:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.45930 * 2 1 4 4 C 1.34780 * 120.00006 * 299.96713 * 3 2 1 5 5 O 1.21277 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99947 * 179.97438 * 4 3 2 7 7 O 1.42900 * 109.46725 * 180.02562 * 6 4 3 8 8 C 1.42902 * 113.99694 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47371 * 179.97438 * 8 7 6 10 10 C 1.38671 * 120.41925 * 269.72387 * 9 8 7 11 11 C 1.38628 * 118.42017 * 179.77877 * 10 9 8 12 12 C 1.38234 * 119.16029 * 0.51622 * 11 10 9 13 13 N 1.31847 * 120.76359 * 359.72016 * 12 11 10 14 14 C 1.31894 * 121.72491 * 0.02562 * 13 12 11 15 15 C 1.53036 * 109.45852 * 119.96810 * 2 1 3 16 16 C 1.53195 * 109.34212 * 181.36932 * 15 2 1 17 17 N 1.46938 * 108.77146 * 305.41944 * 16 15 2 18 18 C 1.36932 * 120.60087 * 233.57602 * 17 16 15 19 19 H 1.08001 * 120.00545 * 27.65420 * 18 17 16 20 20 C 1.38816 * 119.99937 * 207.65281 * 18 17 16 21 21 N 1.31623 * 119.99748 * 17.36640 * 20 18 17 22 22 Si 1.86801 * 120.00255 * 197.37215 * 20 18 17 23 23 H 1.48500 * 109.46854 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47358 * 119.99645 * 22 20 18 25 25 H 1.48496 * 109.47069 * 239.99846 * 22 20 18 26 26 C 1.46924 * 118.76383 * 53.55133 * 17 16 15 27 27 C 1.53038 * 109.46307 * 240.03659 * 2 1 3 28 28 H 1.08993 * 109.47348 * 300.03389 * 1 2 3 29 29 H 1.09005 * 109.47095 * 60.03094 * 1 2 3 30 30 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99940 * 119.97425 * 3 2 1 32 32 H 1.08999 * 109.46907 * 300.00461 * 6 4 3 33 33 H 1.08996 * 109.46856 * 60.00331 * 6 4 3 34 34 H 1.08999 * 109.47466 * 300.00524 * 8 7 6 35 35 H 1.09000 * 109.47045 * 60.00096 * 8 7 6 36 36 H 1.07998 * 120.79262 * 0.02562 * 10 9 8 37 37 H 1.07999 * 120.42184 * 180.22106 * 11 10 9 38 38 H 1.07999 * 119.61565 * 179.75067 * 12 11 10 39 39 H 1.08004 * 119.61340 * 179.97438 * 14 13 12 40 40 H 1.09000 * 109.50381 * 301.33821 * 15 2 1 41 41 H 1.09003 * 109.49843 * 61.40328 * 15 2 1 42 42 H 1.09001 * 109.58753 * 65.16912 * 16 15 2 43 43 H 1.08997 * 109.58687 * 185.59953 * 16 15 2 44 44 H 0.96998 * 119.99441 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58363 * 186.62924 * 26 17 16 46 46 H 1.08996 * 109.70636 * 66.27037 * 26 17 16 47 47 H 1.08994 * 109.49892 * 298.56997 * 27 2 1 48 48 H 1.09004 * 109.49302 * 58.63161 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6928 2.2110 -1.0112 5 8 0.9957 1.8141 -1.9208 6 6 2.1944 3.6321 -1.0109 7 8 1.7181 4.3054 -2.1778 8 6 2.1395 5.6674 -2.2756 9 6 1.5833 6.2761 -3.5370 10 6 2.3036 6.2195 -4.7206 11 6 1.7506 6.7888 -5.8573 12 6 0.5132 7.3990 -5.7711 13 7 -0.1412 7.4383 -4.6272 14 6 0.3519 6.9029 -3.5273 15 6 2.0398 -0.7208 1.2500 16 6 3.5713 -0.6894 1.2647 17 7 4.0679 -1.2488 0.0000 18 6 4.9760 -2.2736 0.0000 19 1 5.0090 -2.9660 0.8282 20 6 5.8543 -2.4227 -1.0646 21 7 6.0605 -1.4208 -1.8929 22 14 6.7436 -4.0452 -1.3217 23 1 6.3416 -5.0035 -0.2609 24 1 6.3863 -4.6002 -2.6519 25 1 8.2101 -3.8217 -1.2563 26 6 3.5714 -0.6884 -1.2642 27 6 2.0399 -0.7207 -1.2501 28 1 -0.3634 0.5143 0.8896 29 1 -0.3633 0.5134 -0.8903 30 1 -0.3633 -1.0276 0.0005 31 1 2.5753 1.6988 0.7277 32 1 1.8301 4.1457 -0.1212 33 1 3.2843 3.6326 -1.0100 34 1 1.7749 6.2235 -1.4119 35 1 3.2284 5.7098 -2.3016 36 1 3.2705 5.7399 -4.7571 37 1 2.2819 6.7601 -6.7971 38 1 0.0773 7.8484 -6.6512 39 1 -0.2133 6.9551 -2.6085 40 1 1.6572 -0.2209 2.1399 41 1 1.6973 -1.7555 1.2385 42 1 3.9147 0.3399 1.3682 43 1 3.9411 -1.2858 2.0988 44 1 6.6739 -1.5251 -2.6370 45 1 3.9417 -1.2843 -2.0984 46 1 3.9143 0.3408 -1.3698 47 1 1.6978 -1.7555 -1.2384 48 1 1.6568 -0.2209 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733362271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:15 Heat of formation + Delta-G solvation = -18.176983 kcal Electronic energy + Delta-G solvation = -28914.565491 eV Core-core repulsion = 24970.468117 eV Total energy + Delta-G solvation = -3944.097374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.43297 -40.06362 -38.12275 -36.90485 -34.38268 -33.17307 -32.14236 -31.92437 -30.95338 -29.89621 -28.05136 -27.42647 -26.06589 -24.07865 -23.80886 -22.29195 -22.25265 -21.37410 -20.38749 -18.66431 -17.54568 -17.18871 -16.91431 -16.88478 -16.47758 -15.88266 -15.52114 -14.87434 -14.69384 -14.32226 -14.18092 -13.96469 -13.84883 -13.45649 -13.36186 -13.27353 -13.25237 -13.08748 -12.56813 -12.34543 -12.13806 -11.81751 -11.61463 -11.56448 -11.39960 -11.11092 -10.94655 -10.73688 -10.36131 -10.24444 -10.08000 -9.96546 -9.92617 -9.71702 -9.66112 -9.55758 -9.33626 -9.02228 -8.57984 -8.46305 -6.67644 -5.79087 -3.21553 0.77880 1.04234 2.91168 2.99240 3.36488 3.44643 3.46323 3.58482 4.04438 4.25466 4.48867 4.52122 4.59681 4.72819 4.75904 4.87851 5.01716 5.09492 5.12638 5.21630 5.31159 5.34835 5.37538 5.42607 5.51406 5.53374 5.60536 5.86155 5.95159 6.00323 6.02224 6.12591 6.19358 6.37394 6.42617 6.45803 6.53680 6.65226 6.73027 6.78205 6.88770 6.93605 7.10583 7.41675 7.70680 7.71097 7.79707 7.89911 8.44476 8.59128 9.20920 9.84538 10.40765 11.28780 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.002632 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.905557 B =10636.289443 C =11853.785477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.187 3.813 3 N -0.710 5.710 4 C 0.517 3.483 5 O -0.518 6.518 6 C 0.042 3.958 7 O -0.354 6.354 8 C 0.105 3.895 9 C -0.139 4.139 10 C -0.052 4.052 11 C -0.176 4.176 12 C 0.101 3.899 13 N -0.489 5.489 14 C 0.120 3.880 15 C -0.137 4.137 16 C 0.146 3.854 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.179 3.821 27 C -0.152 4.152 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.397 0.603 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.013 0.987 43 H 0.055 0.945 44 H 0.252 0.748 45 H 0.084 0.916 46 H 0.015 0.985 47 H 0.059 0.941 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 16.583 0.892 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.102 3.898 3 N -0.363 5.363 4 C 0.301 3.699 5 O -0.393 6.393 6 C -0.038 4.038 7 O -0.273 6.273 8 C 0.027 3.973 9 C -0.141 4.141 10 C -0.078 4.078 11 C -0.195 4.195 12 C -0.056 4.056 13 N -0.197 5.197 14 C -0.037 4.037 15 C -0.177 4.177 16 C 0.019 3.981 17 N -0.314 5.314 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.053 3.947 27 C -0.192 4.192 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.231 0.769 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.102 0.898 46 H 0.033 0.967 47 H 0.078 0.922 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.837 16.605 -0.026 19.300 hybrid contribution 1.908 -0.976 0.302 2.164 sum -7.929 15.629 0.277 17.527 Atomic orbital electron populations 1.22232 0.95431 1.01906 1.02330 1.20260 0.92544 0.79812 0.97197 1.45975 1.53473 1.12179 1.24675 1.19970 0.80927 0.86492 0.82479 1.90658 1.37037 1.76559 1.35082 1.22278 0.99841 0.92247 0.89417 1.88100 1.74155 1.22897 1.42124 1.21253 0.98509 0.83057 0.94451 1.20579 0.96955 1.00706 0.95843 1.21592 0.99881 0.94632 0.91676 1.22177 0.97652 1.00131 0.99569 1.22826 0.91690 0.95317 0.95765 1.67732 1.34983 1.17770 0.99256 1.22694 0.91860 0.92343 0.96766 1.22338 0.99658 1.00556 0.95129 1.20865 0.90458 0.96168 0.90609 1.44086 1.48261 1.39645 0.99421 1.19207 1.09820 1.02988 1.06217 0.91703 1.25035 0.97299 0.97414 0.99916 1.70051 1.37613 1.28982 1.17830 0.86253 0.79087 0.83782 0.77819 1.20279 1.21567 1.21796 1.20669 0.87238 0.96865 0.89921 1.22590 1.00792 0.99133 0.96686 0.93493 0.90785 0.92232 0.76894 0.90563 0.90043 0.91882 0.91830 0.84455 0.84511 0.82685 0.82694 0.92614 0.90672 0.96885 0.92618 0.93747 0.89797 0.96667 0.92215 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.40 37.16 0.31 -2.14 16 2 C 0.19 3.12 0.66 -131.78 -0.09 3.04 16 3 N -0.71 -10.73 4.10 -47.57 -0.20 -10.93 16 4 C 0.52 8.33 7.33 -10.98 -0.08 8.25 16 5 O -0.52 -10.40 12.72 -14.35 -0.18 -10.58 16 6 C 0.04 0.51 6.42 36.01 0.23 0.74 16 7 O -0.35 -4.90 9.86 -55.14 -0.54 -5.44 16 8 C 0.10 1.02 6.09 36.00 0.22 1.24 16 9 C -0.14 -1.48 5.53 -104.48 -0.58 -2.05 16 10 C -0.05 -0.51 9.86 -39.28 -0.39 -0.90 16 11 C -0.18 -1.55 10.11 -39.44 -0.40 -1.95 16 12 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 13 N -0.49 -5.68 10.36 -13.25 -0.14 -5.82 16 14 C 0.12 1.31 10.86 -17.55 -0.19 1.12 16 15 C -0.14 -2.20 4.95 -26.61 -0.13 -2.33 16 16 C 0.15 2.81 6.24 -3.70 -0.02 2.79 16 17 N -0.59 -14.34 3.00 -172.31 -0.52 -14.86 16 18 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 19 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 22 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.18 4.31 5.05 -3.71 -0.02 4.29 16 27 C -0.15 -3.12 4.67 -26.61 -0.12 -3.24 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.40 5.10 7.27 -40.82 -0.30 4.80 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.01 0.25 6.94 -51.93 -0.36 -0.11 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.08 2.33 6.04 -51.93 -0.31 2.02 16 46 H 0.02 0.39 7.74 -51.93 -0.40 -0.02 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.07 1.55 6.20 -51.93 -0.32 1.23 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -34.30 383.87 -9.35 -43.65 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.47 Total: 4.41 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.68 Total: 2.62 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.23 Total: -57.05 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.73 Total: -16.02 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.30 -9.35 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733362271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.476 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds