Wall clock time and date at job start Tue Mar 31 2020 17:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.45930 * 2 1 4 4 C 1.34780 * 120.00006 * 299.96713 * 3 2 1 5 5 O 1.21277 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99947 * 179.97438 * 4 3 2 7 7 O 1.42900 * 109.46725 * 180.02562 * 6 4 3 8 8 C 1.42902 * 113.99694 * 180.02562 * 7 6 4 9 9 C 1.50697 * 109.47371 * 179.97438 * 8 7 6 10 10 C 1.38671 * 120.41925 * 269.72387 * 9 8 7 11 11 C 1.38628 * 118.42017 * 179.77877 * 10 9 8 12 12 C 1.38234 * 119.16029 * 0.51622 * 11 10 9 13 13 N 1.31847 * 120.76359 * 359.72016 * 12 11 10 14 14 C 1.31894 * 121.72491 * 0.02562 * 13 12 11 15 15 C 1.53036 * 109.45852 * 119.96810 * 2 1 3 16 16 C 1.53195 * 109.34212 * 181.36932 * 15 2 1 17 17 N 1.46938 * 108.77146 * 305.41944 * 16 15 2 18 18 C 1.36932 * 120.60087 * 233.57602 * 17 16 15 19 19 H 1.08001 * 120.00545 * 27.65420 * 18 17 16 20 20 C 1.38816 * 119.99937 * 207.65281 * 18 17 16 21 21 N 1.31623 * 119.99748 * 17.36640 * 20 18 17 22 22 Si 1.86801 * 120.00255 * 197.37215 * 20 18 17 23 23 H 1.48500 * 109.46854 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47358 * 119.99645 * 22 20 18 25 25 H 1.48496 * 109.47069 * 239.99846 * 22 20 18 26 26 C 1.46924 * 118.76383 * 53.55133 * 17 16 15 27 27 C 1.53038 * 109.46307 * 240.03659 * 2 1 3 28 28 H 1.08993 * 109.47348 * 300.03389 * 1 2 3 29 29 H 1.09005 * 109.47095 * 60.03094 * 1 2 3 30 30 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99940 * 119.97425 * 3 2 1 32 32 H 1.08999 * 109.46907 * 300.00461 * 6 4 3 33 33 H 1.08996 * 109.46856 * 60.00331 * 6 4 3 34 34 H 1.08999 * 109.47466 * 300.00524 * 8 7 6 35 35 H 1.09000 * 109.47045 * 60.00096 * 8 7 6 36 36 H 1.07998 * 120.79262 * 0.02562 * 10 9 8 37 37 H 1.07999 * 120.42184 * 180.22106 * 11 10 9 38 38 H 1.07999 * 119.61565 * 179.75067 * 12 11 10 39 39 H 1.08004 * 119.61340 * 179.97438 * 14 13 12 40 40 H 1.09000 * 109.50381 * 301.33821 * 15 2 1 41 41 H 1.09003 * 109.49843 * 61.40328 * 15 2 1 42 42 H 1.09001 * 109.58753 * 65.16912 * 16 15 2 43 43 H 1.08997 * 109.58687 * 185.59953 * 16 15 2 44 44 H 0.96998 * 119.99441 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58363 * 186.62924 * 26 17 16 46 46 H 1.08996 * 109.70636 * 66.27037 * 26 17 16 47 47 H 1.08994 * 109.49892 * 298.56997 * 27 2 1 48 48 H 1.09004 * 109.49302 * 58.63161 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6928 2.2110 -1.0112 5 8 0.9957 1.8141 -1.9208 6 6 2.1944 3.6321 -1.0109 7 8 1.7181 4.3054 -2.1778 8 6 2.1395 5.6674 -2.2756 9 6 1.5833 6.2761 -3.5370 10 6 2.3036 6.2195 -4.7206 11 6 1.7506 6.7888 -5.8573 12 6 0.5132 7.3990 -5.7711 13 7 -0.1412 7.4383 -4.6272 14 6 0.3519 6.9029 -3.5273 15 6 2.0398 -0.7208 1.2500 16 6 3.5713 -0.6894 1.2647 17 7 4.0679 -1.2488 0.0000 18 6 4.9760 -2.2736 0.0000 19 1 5.0090 -2.9660 0.8282 20 6 5.8543 -2.4227 -1.0646 21 7 6.0605 -1.4208 -1.8929 22 14 6.7436 -4.0452 -1.3217 23 1 6.3416 -5.0035 -0.2609 24 1 6.3863 -4.6002 -2.6519 25 1 8.2101 -3.8217 -1.2563 26 6 3.5714 -0.6884 -1.2642 27 6 2.0399 -0.7207 -1.2501 28 1 -0.3634 0.5143 0.8896 29 1 -0.3633 0.5134 -0.8903 30 1 -0.3633 -1.0276 0.0005 31 1 2.5753 1.6988 0.7277 32 1 1.8301 4.1457 -0.1212 33 1 3.2843 3.6326 -1.0100 34 1 1.7749 6.2235 -1.4119 35 1 3.2284 5.7098 -2.3016 36 1 3.2705 5.7399 -4.7571 37 1 2.2819 6.7601 -6.7971 38 1 0.0773 7.8484 -6.6512 39 1 -0.2133 6.9551 -2.6085 40 1 1.6572 -0.2209 2.1399 41 1 1.6973 -1.7555 1.2385 42 1 3.9147 0.3399 1.3682 43 1 3.9411 -1.2858 2.0988 44 1 6.6739 -1.5251 -2.6370 45 1 3.9417 -1.2843 -2.0984 46 1 3.9143 0.3408 -1.3698 47 1 1.6978 -1.7555 -1.2384 48 1 1.6568 -0.2209 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733362271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:14 Heat of formation + Delta-G solvation = -40.406373 kcal Electronic energy + Delta-G solvation = -28915.529430 eV Core-core repulsion = 24970.468117 eV Total energy + Delta-G solvation = -3945.061313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44630 -41.11005 -39.28271 -38.18623 -36.07522 -33.97842 -33.66272 -32.78150 -32.48106 -31.58851 -29.17017 -28.90381 -26.89169 -25.90504 -24.54757 -23.93108 -22.98971 -22.86827 -21.81148 -20.15715 -18.84123 -18.43186 -17.94568 -17.67621 -17.57621 -16.87391 -16.78351 -16.37383 -16.07636 -15.66251 -15.44966 -15.20263 -15.10408 -14.85092 -14.74242 -14.52261 -14.30248 -14.01689 -14.00573 -13.42119 -13.22303 -13.17267 -13.07880 -12.93701 -12.80971 -12.57349 -12.52471 -12.33240 -12.18695 -11.95495 -11.74306 -11.30287 -11.29309 -10.84179 -10.76528 -10.53159 -10.44394 -10.40132 -10.04321 -9.93224 -8.65767 -7.86377 -5.30668 0.04115 0.29608 1.44305 1.47375 1.56738 1.71374 1.96609 2.51035 2.74936 3.20339 3.28811 3.54280 3.67149 3.75452 3.86300 3.87576 3.99449 4.04456 4.06272 4.08669 4.15202 4.24363 4.34452 4.42625 4.49474 4.50613 4.68811 4.69206 4.72267 4.83102 4.83457 4.89396 4.96597 5.06295 5.14717 5.16462 5.23235 5.28349 5.36410 5.38749 5.51724 5.64208 5.69368 5.72743 5.78755 6.04958 6.39516 6.72545 6.96787 7.15554 7.39794 7.88547 8.39359 9.19302 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014695 B = 0.002632 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.905557 B =10636.289443 C =11853.785477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.189 3.811 3 N -0.703 5.703 4 C 0.508 3.492 5 O -0.565 6.565 6 C 0.047 3.953 7 O -0.390 6.390 8 C 0.103 3.897 9 C -0.153 4.153 10 C -0.068 4.068 11 C -0.175 4.175 12 C 0.091 3.909 13 N -0.516 5.516 14 C 0.106 3.894 15 C -0.123 4.123 16 C 0.140 3.860 17 N -0.608 5.608 18 C -0.257 4.257 19 H 0.070 0.930 20 C -0.054 4.054 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.264 1.264 24 H -0.296 1.296 25 H -0.292 1.292 26 C 0.195 3.805 27 C -0.141 4.141 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.410 0.590 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.181 0.819 39 H 0.168 0.832 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.060 0.940 44 H 0.246 0.754 45 H 0.038 0.962 46 H -0.004 1.004 47 H 0.052 0.948 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 17.312 2.963 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.104 3.896 3 N -0.357 5.357 4 C 0.294 3.706 5 O -0.444 6.444 6 C -0.032 4.032 7 O -0.310 6.310 8 C 0.027 3.973 9 C -0.155 4.155 10 C -0.094 4.094 11 C -0.194 4.194 12 C -0.066 4.066 13 N -0.225 5.225 14 C -0.051 4.051 15 C -0.162 4.162 16 C 0.014 3.986 17 N -0.331 5.331 18 C -0.387 4.387 19 H 0.088 0.912 20 C -0.249 4.249 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.188 1.188 24 H -0.224 1.224 25 H -0.219 1.219 26 C 0.069 3.931 27 C -0.181 4.181 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.247 0.753 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.198 0.802 39 H 0.185 0.815 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.014 0.986 47 H 0.071 0.929 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.319 17.349 2.112 20.296 hybrid contribution 2.053 -1.169 -0.363 2.390 sum -8.267 16.180 1.749 18.254 Atomic orbital electron populations 1.22111 0.93792 1.02476 1.02508 1.20151 0.93693 0.80423 0.95378 1.45890 1.53338 1.11391 1.25041 1.20770 0.80028 0.88126 0.81638 1.90641 1.39218 1.77739 1.36756 1.22322 1.00357 0.89868 0.90646 1.88048 1.74890 1.24912 1.43116 1.21444 0.99325 0.81449 0.95088 1.20784 0.97143 1.00967 0.96627 1.21898 1.00473 0.94932 0.92094 1.22495 0.97506 0.99111 1.00335 1.23322 0.92002 0.95197 0.96050 1.67742 1.35932 1.18698 1.00111 1.22964 0.92270 0.92605 0.97248 1.22211 0.96850 1.00880 0.96289 1.21106 0.92618 0.96602 0.88241 1.44296 1.48110 1.39696 1.01043 1.19556 1.09415 1.03719 1.06001 0.91234 1.25770 0.98768 1.00206 1.00185 1.70201 1.38673 1.30767 1.18390 0.85283 0.77714 0.80490 0.77439 1.18839 1.22358 1.21904 1.20288 0.89340 0.94581 0.88904 1.22388 0.97959 0.99197 0.98509 0.90795 0.93045 0.91514 0.75293 0.86379 0.88818 0.89221 0.90543 0.83604 0.81931 0.80195 0.81487 0.88210 0.91045 0.95445 0.92146 0.94448 0.94334 0.98636 0.92940 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 8.40 71.98 0.60 -3.67 16 2 C 0.19 6.00 0.66 3.63 0.00 6.00 16 3 N -0.70 -19.88 4.10 -422.81 -1.73 -21.62 16 4 C 0.51 15.91 7.33 87.66 0.64 16.55 16 5 O -0.56 -23.03 12.72 16.02 0.20 -22.82 16 6 C 0.05 1.05 6.42 71.24 0.46 1.51 16 7 O -0.39 -10.43 9.86 -129.94 -1.28 -11.71 16 8 C 0.10 1.86 6.09 71.24 0.43 2.29 16 9 C -0.15 -3.18 5.53 -19.78 -0.11 -3.28 16 10 C -0.07 -1.32 9.86 22.47 0.22 -1.10 16 11 C -0.18 -2.93 10.11 22.36 0.23 -2.70 16 12 C 0.09 1.66 11.18 84.69 0.95 2.60 16 13 N -0.52 -11.84 10.36 -195.83 -2.03 -13.87 16 14 C 0.11 2.26 10.86 84.67 0.92 3.18 16 15 C -0.12 -3.54 4.95 30.67 0.15 -3.39 16 16 C 0.14 5.06 6.24 86.36 0.54 5.60 16 17 N -0.61 -29.39 3.00 -699.07 -2.09 -31.49 16 18 C -0.26 -13.83 9.58 84.04 0.81 -13.03 16 19 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 20 C -0.05 -3.03 4.91 84.86 0.42 -2.61 16 21 N -0.93 -55.78 11.19 21.65 0.24 -55.54 16 22 Si 0.96 45.12 29.59 68.60 2.03 47.15 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 C 0.19 9.67 5.05 86.36 0.44 10.10 16 27 C -0.14 -5.85 4.67 30.67 0.14 -5.71 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.73 6.17 -2.38 -0.01 1.71 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.41 9.28 7.27 -92.71 -0.67 8.60 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 35 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 36 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.03 0.94 6.94 -2.39 -0.02 0.92 16 43 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 44 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.04 2.24 6.04 -2.39 -0.01 2.23 16 46 H 0.00 -0.23 7.74 -2.39 -0.02 -0.25 16 47 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.05 2.40 6.20 -2.39 -0.01 2.39 16 Total: -1.00 -77.83 383.87 2.46 -75.36 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.29 Total: 22.17 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.84 Total: 12.36 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -5.61 Total: -122.51 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.08 Total: -34.53 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -77.83 2.46 -75.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733362271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.957 kcal (2) G-P(sol) polarization free energy of solvation -77.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds