Wall clock time and date at job start Tue Mar 31 2020 17:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38354 * 119.46070 * 2 1 4 4 C 1.38358 * 119.30485 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.85607 * 179.97438 * 4 3 2 6 6 C 1.40017 * 118.28583 * 0.02562 * 4 3 2 7 7 C 1.47846 * 120.55932 * 180.02562 * 6 4 3 8 8 O 1.21552 * 119.99754 * 269.99512 * 7 6 4 9 9 N 1.34773 * 119.99906 * 89.99674 * 7 6 4 10 10 C 1.47153 * 120.98304 * 359.71525 * 9 7 6 11 11 C 1.53719 * 108.16065 * 129.43653 * 10 9 7 12 12 O 1.42959 * 109.14628 * 52.53605 * 11 10 9 13 13 C 1.42957 * 114.17047 * 297.29197 * 12 11 10 14 14 H 1.09005 * 109.55547 * 302.62960 * 13 12 11 15 15 C 1.52997 * 109.51154 * 182.50790 * 13 12 11 16 16 N 1.46491 * 109.47698 * 65.25348 * 15 13 12 17 17 C 1.36937 * 120.00630 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99627 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00590 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99798 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00342 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47107 * 90.00132 * 21 19 17 23 23 H 1.48503 * 109.47462 * 210.00143 * 21 19 17 24 24 H 1.48501 * 109.47333 * 330.00423 * 21 19 17 25 25 C 1.47155 * 120.98275 * 180.02562 * 9 7 6 26 26 C 1.39526 * 118.88475 * 0.02562 * 6 4 3 27 27 C 1.50701 * 119.71632 * 180.26039 * 26 6 4 28 28 N 1.31694 * 120.56367 * 359.97438 * 26 6 4 29 29 H 1.09003 * 109.46439 * 269.98001 * 1 2 3 30 30 H 1.08997 * 109.47287 * 29.97098 * 1 2 3 31 31 H 1.08992 * 109.47010 * 149.97619 * 1 2 3 32 32 H 1.08000 * 120.34798 * 0.02562 * 3 2 1 33 33 H 1.09006 * 109.47087 * 89.99865 * 5 4 3 34 34 H 1.08995 * 109.47234 * 209.99706 * 5 4 3 35 35 H 1.09002 * 109.47573 * 330.00413 * 5 4 3 36 36 H 1.08993 * 109.68655 * 249.21540 * 10 9 7 37 37 H 1.09003 * 109.68269 * 9.77008 * 10 9 7 38 38 H 1.09007 * 109.65310 * 292.57483 * 11 10 9 39 39 H 1.08994 * 109.44543 * 172.37956 * 11 10 9 40 40 H 1.09010 * 109.47039 * 185.25697 * 15 13 12 41 41 H 1.09004 * 109.47119 * 305.24403 * 15 13 12 42 42 H 0.97004 * 119.99900 * 359.97438 * 16 15 13 43 43 H 0.97001 * 120.00386 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.67662 * 350.23005 * 25 9 7 45 45 H 1.08993 * 109.68465 * 110.78469 * 25 9 7 46 46 H 1.09000 * 109.47070 * 269.72418 * 27 26 6 47 47 H 1.08998 * 109.46903 * 29.72777 * 27 26 6 48 48 H 1.09002 * 109.46696 * 149.72395 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2009 -0.0005 5 6 4.3475 2.4924 -0.0011 6 6 4.2312 -0.0339 -0.0016 7 6 5.7084 -0.0966 -0.0017 8 8 6.3155 -0.1215 -1.0544 9 7 6.3816 -0.1261 1.1655 10 6 5.6687 -0.0906 2.4523 11 6 6.1944 -1.2431 3.3232 12 8 7.6208 -1.1704 3.3859 13 6 8.2712 -1.3306 2.1230 14 1 7.9825 -2.2849 1.6824 15 6 9.7879 -1.2975 2.3214 16 7 10.2022 -2.4576 3.1142 17 6 11.5241 -2.6402 3.4214 18 1 12.2613 -1.9292 3.0788 19 6 11.9167 -3.7392 4.1729 20 7 11.0183 -4.6060 4.5900 21 14 13.7200 -3.9887 4.5914 22 1 14.0280 -3.3122 5.8769 23 1 14.0029 -5.4412 4.7162 24 1 14.5627 -3.4111 3.5137 25 6 7.8516 -0.1879 1.1907 26 6 3.4716 -1.2043 -0.0027 27 6 4.1627 -2.5434 0.0021 28 7 2.1558 -1.1486 -0.0021 29 1 -0.3632 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6444 2.1381 0.0004 33 1 4.5351 2.8041 1.0264 34 1 5.2972 2.3452 -0.5152 35 1 3.7717 3.2623 -0.5148 36 1 5.8537 0.8620 2.9484 37 1 4.5991 -0.2153 2.2830 38 1 5.8973 -2.1970 2.8874 39 1 5.7808 -1.1565 4.3279 40 1 10.2821 -1.3258 1.3502 41 1 10.0660 -0.3822 2.8439 42 1 9.5401 -3.0961 3.4221 43 1 11.2926 -5.3743 5.1149 44 1 8.2283 -0.3770 0.1855 45 1 8.2524 0.7551 1.5621 46 1 4.3289 -2.8702 -1.0244 47 1 5.1204 -2.4562 0.5152 48 1 3.5387 -3.2725 0.5190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733738694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:24 Heat of formation + Delta-G solvation = -32.874930 kcal Electronic energy + Delta-G solvation = -29320.695788 eV Core-core repulsion = 25375.961063 eV Total energy + Delta-G solvation = -3944.734725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35278 -39.86809 -38.26816 -35.12228 -34.59542 -34.42278 -34.03774 -32.20435 -30.23871 -29.53132 -28.60690 -28.07796 -27.41422 -25.52109 -23.55755 -23.11200 -22.07763 -21.45033 -20.86477 -19.63703 -17.78638 -17.43166 -17.05525 -16.72990 -16.17850 -15.43622 -15.24257 -15.20437 -14.97950 -14.67825 -14.48931 -14.24826 -13.76853 -13.70104 -13.55884 -13.43842 -13.25621 -13.16607 -12.94978 -12.73327 -12.60175 -12.49419 -12.37604 -12.23179 -12.07117 -12.01607 -11.64483 -11.04053 -10.89223 -10.79912 -10.58199 -10.31102 -10.04476 -9.94771 -9.85537 -9.72127 -9.65119 -9.09985 -8.86514 -8.62309 -6.89240 -5.72578 -3.01408 0.53463 0.82891 2.29753 2.65978 3.25557 3.46441 3.51165 3.53029 3.77135 3.90774 4.09364 4.17819 4.24418 4.56873 4.65783 4.69664 4.83643 4.89897 4.95988 5.03454 5.05268 5.07644 5.13068 5.18259 5.18641 5.25786 5.29927 5.36902 5.41982 5.47424 5.60155 5.60863 5.64479 5.66487 5.75930 5.80775 5.82616 5.85286 5.92372 6.20673 6.26494 6.29295 6.54761 6.67886 7.09190 7.42547 7.60993 7.72282 7.86874 8.45449 9.57176 10.13899 10.49618 11.50239 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024468 B = 0.002501 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.070651 B =11190.700521 C =11564.212920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.147 3.853 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.124 4.124 6 C -0.183 4.183 7 C 0.574 3.426 8 O -0.528 6.528 9 N -0.605 5.605 10 C 0.074 3.926 11 C 0.047 3.953 12 O -0.356 6.356 13 C 0.074 3.926 14 H 0.065 0.935 15 C 0.164 3.836 16 N -0.726 5.726 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.084 3.916 26 C 0.175 3.825 27 C -0.113 4.113 28 N -0.486 5.486 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.070 13.734 -8.282 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.010 3.990 3 C -0.203 4.203 4 C -0.010 4.010 5 C -0.180 4.180 6 C -0.188 4.188 7 C 0.361 3.639 8 O -0.404 6.404 9 N -0.338 5.338 10 C -0.049 4.049 11 C -0.031 4.031 12 O -0.274 6.274 13 C 0.015 3.985 14 H 0.083 0.917 15 C 0.035 3.965 16 N -0.371 5.371 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.038 4.038 26 C 0.037 3.963 27 C -0.170 4.170 28 N -0.197 5.197 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.919 13.000 -8.677 27.741 hybrid contribution 0.963 0.429 0.219 1.076 sum -21.956 13.428 -8.459 27.091 Atomic orbital electron populations 1.20760 0.88419 1.03720 1.03376 1.21435 0.97184 0.88033 0.92350 1.21746 0.93544 0.99561 1.05437 1.20304 0.93827 0.94350 0.92477 1.20923 1.00369 0.93369 1.03383 1.20573 0.94250 0.94753 1.09242 1.18038 0.86385 0.75929 0.83556 1.90815 1.69224 1.49649 1.30711 1.48167 1.07443 1.72600 1.05598 1.22580 0.97083 1.01036 0.84220 1.22987 0.83230 0.96413 1.00492 1.88168 1.16631 1.93140 1.29448 1.22816 0.95403 0.96384 0.83906 0.91739 1.20615 0.87442 0.92707 0.95699 1.42225 1.06425 1.25557 1.62877 1.19217 0.84397 1.06190 1.27220 0.91132 1.24743 0.97635 0.97675 1.00935 1.69672 1.32092 1.14590 1.41696 0.86175 0.84775 0.76929 0.78217 1.21732 1.21802 1.20757 1.22426 0.78292 1.00402 1.02684 1.21314 0.88881 0.94579 0.91541 1.20854 0.99893 0.92185 1.04055 1.67396 1.08691 1.29123 1.14515 0.90029 0.90502 0.90193 0.84227 0.89905 0.90626 0.90276 0.90190 0.89587 0.92679 0.87732 0.94604 0.95254 0.77908 0.93549 0.87836 0.90144 0.89475 0.90647 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 36.01 0.37 -0.24 16 2 C 0.15 1.34 6.78 -82.51 -0.56 0.78 16 3 C -0.18 -1.50 9.43 -39.49 -0.37 -1.87 16 4 C 0.00 -0.02 5.95 -103.91 -0.62 -0.63 16 5 C -0.12 -0.98 9.69 36.00 0.35 -0.63 16 6 C -0.18 -2.17 3.71 -104.82 -0.39 -2.56 16 7 C 0.57 7.84 4.24 -12.33 -0.05 7.79 16 8 O -0.53 -8.97 16.57 5.32 0.09 -8.88 16 9 N -0.60 -7.65 3.01 -173.11 -0.52 -8.17 16 10 C 0.07 0.78 6.57 -3.31 -0.02 0.76 16 11 C 0.05 0.58 7.00 37.53 0.26 0.85 16 12 O -0.36 -6.07 10.33 -35.23 -0.36 -6.43 16 13 C 0.07 1.24 2.81 -26.56 -0.07 1.16 16 14 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 15 C 0.16 3.32 5.93 -4.05 -0.02 3.30 16 16 N -0.73 -18.85 5.55 -59.91 -0.33 -19.19 16 17 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 21 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 C 0.08 1.18 5.93 -3.52 -0.02 1.16 16 26 C 0.18 2.08 6.66 -82.17 -0.55 1.53 16 27 C -0.11 -1.24 9.79 36.01 0.35 -0.88 16 28 N -0.49 -5.54 10.17 -5.42 -0.06 -5.59 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.74 7.19 -51.93 -0.37 0.37 16 35 H 0.08 0.47 8.10 -51.93 -0.42 0.04 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.82 6.30 -51.93 -0.33 0.49 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.39 10.68 7.67 -40.82 -0.31 10.36 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.21 16 44 H 0.10 1.51 7.08 -51.93 -0.37 1.15 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 0.88 7.07 -51.93 -0.37 0.51 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -34.90 393.10 -8.79 -43.69 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.63 Total: 5.87 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.60 Total: 3.06 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.18 Total: -60.87 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.28 Total: -15.31 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.90 -8.79 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733738694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.816 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds