Wall clock time and date at job start Tue Mar 31 2020 17:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38618 * 120.75516 * 2 1 4 4 C 1.38562 * 119.35322 * 180.02562 * 3 2 1 5 5 C 1.50692 * 119.55119 * 179.97438 * 4 3 2 6 6 N 1.31520 * 120.89942 * 359.97438 * 4 3 2 7 7 C 1.32718 * 121.64334 * 0.02562 * 6 4 3 8 8 C 1.48168 * 119.71943 * 179.97438 * 7 6 4 9 9 O 1.21525 * 120.00022 * 170.90679 * 8 7 6 10 10 N 1.34779 * 120.00765 * 350.90903 * 8 7 6 11 11 C 1.46962 * 120.64829 * 352.15055 * 10 8 7 12 12 C 1.53191 * 108.88760 * 233.53021 * 11 10 8 13 13 C 1.53032 * 109.31458 * 305.44145 * 12 11 10 14 14 C 1.53044 * 109.53675 * 61.36642 * 13 12 11 15 15 C 1.53001 * 109.49876 * 178.68292 * 14 13 12 16 16 O 1.42901 * 109.47071 * 184.83589 * 15 14 13 17 17 N 1.46505 * 109.52381 * 58.59955 * 14 13 12 18 18 C 1.36936 * 119.99581 * 180.14468 * 17 14 13 19 19 H 1.08001 * 120.00520 * 0.02562 * 18 17 14 20 20 C 1.38810 * 119.99499 * 180.02562 * 18 17 14 21 21 N 1.31619 * 120.00377 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47026 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47589 * 119.99876 * 22 20 18 25 25 H 1.48493 * 109.47420 * 240.00252 * 22 20 18 26 26 C 1.46920 * 120.63823 * 172.32760 * 10 8 7 27 27 C 1.38596 * 120.75344 * 180.25172 * 2 1 3 28 28 H 1.09007 * 109.47186 * 90.00306 * 1 2 3 29 29 H 1.09000 * 109.47274 * 210.00442 * 1 2 3 30 30 H 1.09000 * 109.47331 * 330.00729 * 1 2 3 31 31 H 1.08007 * 120.32755 * 359.97064 * 3 2 1 32 32 H 1.09004 * 109.47354 * 270.01972 * 5 4 3 33 33 H 1.09005 * 109.47358 * 30.01772 * 5 4 3 34 34 H 1.08997 * 109.47597 * 150.01646 * 5 4 3 35 35 H 1.08998 * 109.46618 * 113.74546 * 11 10 8 36 36 H 1.09004 * 109.71182 * 353.46505 * 11 10 8 37 37 H 1.09003 * 109.49400 * 185.48911 * 12 11 10 38 38 H 1.09000 * 109.49647 * 65.40056 * 12 11 10 39 39 H 1.08997 * 109.46023 * 301.34455 * 13 12 11 40 40 H 1.09003 * 109.46170 * 181.38083 * 13 12 11 41 41 H 1.08996 * 109.47110 * 304.83944 * 15 14 13 42 42 H 1.08996 * 109.46848 * 64.83795 * 15 14 13 43 43 H 0.96695 * 113.99808 * 179.97438 * 16 15 14 44 44 H 0.97002 * 119.99672 * 0.15283 * 17 14 13 45 45 H 0.97002 * 120.00370 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.58607 * 6.61090 * 26 10 8 47 47 H 1.08996 * 109.58674 * 246.32668 * 26 10 8 48 48 H 1.07995 * 120.47344 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6011 1.1573 -0.0005 5 6 4.3761 2.4496 -0.0011 6 7 4.2487 0.0126 -0.0005 7 6 3.6081 -1.1497 -0.0005 8 6 4.3805 -2.4141 -0.0011 9 8 3.8106 -3.4745 0.1652 10 7 5.7153 -2.3885 -0.1861 11 6 6.3963 -1.1404 -0.5580 12 6 7.2299 -1.3872 -1.8193 13 6 8.1714 -2.5697 -1.5804 14 6 7.3496 -3.8279 -1.2908 15 6 8.2908 -5.0164 -1.0844 16 8 7.5222 -6.2107 -0.9260 17 7 6.4576 -4.1008 -2.4204 18 6 5.6190 -5.1828 -2.3847 19 1 5.6148 -5.8346 -1.5236 20 6 4.7742 -5.4417 -3.4552 21 7 4.7796 -4.6476 -4.5049 22 14 3.6296 -6.9171 -3.4063 23 1 3.8154 -7.6454 -2.1255 24 1 2.2223 -6.4558 -3.5143 25 1 3.9418 -7.8236 -4.5403 26 6 6.5173 -3.6087 -0.0234 27 6 2.2157 -1.1911 -0.0052 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.6936 2.1366 -0.0005 32 1 4.5623 2.7612 -1.0290 33 1 3.8001 3.2191 0.5131 34 1 5.3266 2.3036 0.5121 35 1 7.0495 -0.8264 0.2561 36 1 5.6578 -0.3631 -0.7544 37 1 7.8152 -0.4967 -2.0486 38 1 6.5674 -1.6126 -2.6550 39 1 8.8170 -2.3537 -0.7291 40 1 8.7832 -2.7320 -2.4679 41 1 8.9442 -5.1171 -1.9510 42 1 8.8940 -4.8514 -0.1917 43 1 8.0551 -7.0062 -0.7911 44 1 6.4612 -3.5152 -3.1937 45 1 4.1889 -4.8283 -5.2529 46 1 5.8570 -4.4620 0.1321 47 1 7.1803 -3.4985 0.8346 48 1 1.6959 -2.1377 -0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733819875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:12 Heat of formation + Delta-G solvation = -12.785546 kcal Electronic energy + Delta-G solvation = -30663.802182 eV Core-core repulsion = 26719.938598 eV Total energy + Delta-G solvation = -3943.863584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75364 -39.23589 -37.51883 -35.66799 -34.41840 -33.58415 -32.71724 -31.98438 -30.87877 -28.51718 -28.09661 -27.59839 -25.92773 -25.09721 -23.42646 -23.23270 -21.58006 -21.15389 -19.58777 -18.26683 -17.35990 -16.95544 -16.28244 -16.07400 -15.99333 -15.36055 -15.10904 -14.87229 -14.18716 -14.05517 -13.98637 -13.68372 -13.45984 -13.39232 -13.15454 -13.01465 -12.91827 -12.74771 -12.55406 -12.36671 -12.21157 -11.98234 -11.89224 -11.65065 -11.48458 -11.07078 -10.71679 -10.63182 -10.49793 -10.44488 -10.03486 -9.67837 -9.59689 -9.49410 -9.40719 -8.92255 -8.89568 -8.77756 -8.58664 -7.86708 -6.70353 -5.47200 -2.71851 0.80084 1.17754 3.12125 3.49602 3.63489 3.69497 3.74861 4.02785 4.16835 4.49219 4.68728 4.84846 4.92418 4.93984 5.06636 5.22156 5.26367 5.40076 5.42508 5.43528 5.47377 5.50355 5.61126 5.62433 5.65592 5.73022 5.74795 5.92132 5.97195 5.98212 6.01713 6.04046 6.16236 6.18895 6.23008 6.29989 6.36212 6.49605 6.53068 6.72673 6.81092 6.94751 6.99939 7.32054 7.78074 8.10287 8.26467 8.45678 8.70884 8.80569 9.84312 10.32348 10.68195 11.76862 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.004907 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.447480 B = 5704.797678 C = 7143.499169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.161 4.161 4 C 0.119 3.881 5 C -0.102 4.102 6 N -0.453 5.453 7 C 0.105 3.895 8 C 0.568 3.432 9 O -0.520 6.520 10 N -0.570 5.570 11 C 0.077 3.923 12 C -0.133 4.133 13 C -0.116 4.116 14 C 0.189 3.811 15 C 0.075 3.925 16 O -0.535 6.535 17 N -0.701 5.701 18 C -0.187 4.187 19 H 0.092 0.908 20 C -0.027 4.027 21 N -0.949 5.949 22 Si 0.902 3.098 23 H -0.280 1.280 24 H -0.298 1.298 25 H -0.300 1.300 26 C 0.107 3.893 27 C -0.120 4.120 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.142 0.858 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.023 0.977 43 H 0.350 0.650 44 H 0.381 0.619 45 H 0.247 0.753 46 H 0.102 0.898 47 H 0.046 0.954 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.159 15.423 10.894 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.020 4.020 5 C -0.160 4.160 6 N -0.167 5.167 7 C -0.032 4.032 8 C 0.353 3.647 9 O -0.395 6.395 10 N -0.301 5.301 11 C -0.045 4.045 12 C -0.171 4.171 13 C -0.154 4.154 14 C 0.095 3.905 15 C -0.006 4.006 16 O -0.338 6.338 17 N -0.342 5.342 18 C -0.318 4.318 19 H 0.110 0.890 20 C -0.220 4.220 21 N -0.600 5.600 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.226 1.226 25 H -0.228 1.228 26 C -0.017 4.017 27 C -0.140 4.140 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.158 0.842 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.041 0.959 43 H 0.195 0.805 44 H 0.216 0.784 45 H 0.056 0.944 46 H 0.120 0.880 47 H 0.064 0.936 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.148 15.078 10.959 18.676 hybrid contribution -0.891 -1.058 -0.461 1.458 sum 0.257 14.020 10.498 17.517 Atomic orbital electron populations 1.20831 0.89860 1.03351 1.03177 1.20328 0.97007 0.92559 0.95334 1.21942 0.94729 0.98613 1.02826 1.21444 0.91341 0.94175 0.95039 1.20714 1.00296 0.91675 1.03279 1.67484 1.38572 0.97754 1.12914 1.21407 0.91878 0.92163 0.97742 1.17692 0.82107 0.86761 0.78119 1.90797 1.68914 1.30056 1.49732 1.47533 1.05709 1.10496 1.66324 1.22856 0.98274 0.87996 0.95412 1.21905 0.98478 0.97290 0.99419 1.21640 0.97598 0.94944 1.01189 1.19940 0.90092 0.90628 0.89807 1.22753 0.93678 0.87179 0.96992 1.86976 1.35061 1.16270 1.95485 1.42426 1.43805 1.31615 1.16306 1.19573 1.10297 1.00668 1.01292 0.89004 1.24641 1.00902 0.99281 0.97162 1.69675 1.42844 1.39769 1.07761 0.86128 0.80847 0.82796 0.76708 1.20563 1.22630 1.22755 1.22175 0.94905 0.87818 0.96826 1.22016 0.93928 0.99591 0.98499 0.90252 0.90713 0.91026 0.84732 0.90220 0.90771 0.90269 0.92972 0.84173 0.91804 0.90589 0.92179 0.91835 0.94411 0.95893 0.80510 0.78420 0.94369 0.88013 0.93632 0.83475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.06 36.01 0.36 -0.68 16 2 C -0.04 -0.55 5.91 -104.35 -0.62 -1.17 16 3 C -0.16 -1.76 9.45 -39.32 -0.37 -2.13 16 4 C 0.12 1.43 6.78 -82.61 -0.56 0.87 16 5 C -0.10 -0.83 10.17 36.00 0.37 -0.46 16 6 N -0.45 -6.89 6.03 -6.06 -0.04 -6.93 16 7 C 0.11 1.89 6.59 -83.01 -0.55 1.34 16 8 C 0.57 12.22 7.65 -12.18 -0.09 12.13 16 9 O -0.52 -13.05 15.79 5.34 0.08 -12.97 16 10 N -0.57 -11.28 2.90 -173.73 -0.50 -11.78 16 11 C 0.08 1.26 5.88 -3.69 -0.02 1.24 16 12 C -0.13 -2.15 5.91 -26.62 -0.16 -2.31 16 13 C -0.12 -1.89 4.76 -26.69 -0.13 -2.02 16 14 C 0.19 3.79 0.68 -131.69 -0.09 3.70 16 15 C 0.08 1.37 6.09 37.16 0.23 1.60 16 16 O -0.54 -10.76 10.05 -35.23 -0.35 -11.12 16 17 N -0.70 -17.79 4.75 -47.12 -0.22 -18.01 16 18 C -0.19 -5.42 8.06 -15.06 -0.12 -5.54 16 19 H 0.09 2.74 5.26 -52.49 -0.28 2.46 16 20 C -0.03 -0.83 5.50 -17.43 -0.10 -0.92 16 21 N -0.95 -30.21 13.06 55.49 0.72 -29.49 16 22 Si 0.90 24.89 29.55 -169.99 -5.02 19.86 16 23 H -0.28 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.30 -8.36 7.11 56.52 0.40 -7.96 16 25 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 26 C 0.11 2.18 4.92 -3.71 -0.02 2.17 16 27 C -0.12 -1.92 9.34 -39.05 -0.36 -2.29 16 28 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.07 0.66 8.10 -51.93 -0.42 0.23 16 30 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.14 2.27 4.02 -84.37 -0.34 1.93 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.50 6.75 -51.93 -0.35 1.15 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.35 5.23 9.12 45.56 0.42 5.64 16 44 H 0.38 10.40 6.43 -40.82 -0.26 10.14 16 45 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.10 2.48 5.81 -51.92 -0.30 2.18 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.15 2.46 7.67 -52.49 -0.40 2.05 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -36.95 378.35 -8.43 -45.38 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -6.56 Total: 13.82 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.23 Total: 5.53 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.04 Total: -66.21 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.27 Total: -24.09 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.02 Total: 19.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.95 -8.43 -45.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733819875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.594 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds