Wall clock time and date at job start Tue Mar 31 2020 17:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00116 * 2 1 4 4 C 1.50693 * 109.47098 * 180.02562 * 3 2 1 5 5 C 1.38355 * 120.35138 * 270.01997 * 4 3 2 6 6 N 1.31918 * 121.08280 * 179.97438 * 5 4 3 7 7 C 1.31693 * 121.88310 * 359.74534 * 6 5 4 8 8 C 1.39521 * 120.56170 * 0.53992 * 7 6 5 9 9 C 1.47844 * 120.55508 * 179.71954 * 8 7 6 10 10 O 1.21561 * 119.99403 * 139.18076 * 9 8 7 11 11 N 1.34769 * 120.00671 * 319.17688 * 9 8 7 12 12 C 1.46922 * 120.63398 * 174.17456 * 11 9 8 13 13 C 1.53193 * 108.77530 * 126.41327 * 12 11 9 14 14 C 1.53045 * 109.31229 * 54.63849 * 13 12 11 15 15 C 1.52997 * 109.45910 * 178.62761 * 14 13 12 16 16 N 1.46494 * 109.45824 * 58.65351 * 14 13 12 17 17 C 1.36946 * 119.99961 * 179.97438 * 16 14 13 18 18 H 1.08002 * 119.99746 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00082 * 180.02562 * 17 16 14 20 20 N 1.31620 * 120.00001 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00145 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.47211 * 270.00103 * 21 19 17 23 23 H 1.48500 * 109.47363 * 29.99719 * 21 19 17 24 24 H 1.48499 * 109.47417 * 150.00110 * 21 19 17 25 25 C 1.53041 * 109.52268 * 298.64203 * 14 13 12 26 26 C 1.46934 * 120.62974 * 354.19963 * 11 9 8 27 27 C 1.38353 * 120.35053 * 90.00178 * 4 3 2 28 28 H 1.08992 * 109.46967 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46840 * 300.00081 * 1 2 3 30 30 H 1.09000 * 109.46805 * 60.00062 * 1 2 3 31 31 H 1.09003 * 109.47182 * 59.99666 * 3 2 1 32 32 H 1.09003 * 109.46612 * 300.00203 * 3 2 1 33 33 H 1.08004 * 119.45516 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.71956 * 180.26671 * 7 6 5 35 35 H 1.09004 * 109.58808 * 6.62878 * 12 11 9 36 36 H 1.08998 * 109.70504 * 246.27452 * 12 11 9 37 37 H 1.08996 * 109.50091 * 294.68446 * 13 12 11 38 38 H 1.08997 * 109.52191 * 174.60176 * 13 12 11 39 39 H 1.08995 * 109.47218 * 300.02514 * 15 14 13 40 40 H 1.08998 * 109.47313 * 60.02421 * 15 14 13 41 41 H 1.08998 * 109.47227 * 180.02562 * 15 14 13 42 42 H 0.96995 * 120.00511 * 359.97373 * 16 14 13 43 43 H 0.96992 * 120.00294 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49522 * 181.31214 * 25 14 13 45 45 H 1.08997 * 109.49630 * 301.40158 * 25 14 13 46 46 H 1.09003 * 109.58511 * 353.37089 * 26 11 9 47 47 H 1.08999 * 109.58783 * 113.65194 * 26 11 9 48 48 H 1.08004 * 120.86061 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2099 1.1306 1.1930 6 7 5.5248 1.0259 1.2093 7 6 6.2316 0.9649 0.0997 8 6 5.6040 1.0211 -1.1451 9 6 6.3980 0.9588 -2.3906 10 8 5.9985 0.3045 -3.3340 11 7 7.5647 1.6276 -2.4803 12 6 8.4264 1.4747 -3.6604 13 6 8.7327 2.8633 -4.2304 14 6 9.3268 3.7432 -3.1280 15 6 9.6658 5.1202 -3.7022 16 7 10.5452 3.1178 -2.6080 17 6 11.2548 3.7277 -1.6081 18 1 10.9163 4.6700 -1.2032 19 6 12.4096 3.1355 -1.1156 20 7 13.0918 3.7220 -0.1549 21 14 12.9954 1.5061 -1.8164 22 1 12.3915 0.3898 -1.0452 23 1 12.5849 1.4032 -3.2399 24 1 14.4753 1.4297 -1.7213 25 6 8.3102 3.8993 -1.9948 26 6 7.9993 2.5229 -1.3994 27 6 4.2089 1.1315 -1.1949 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.6688 1.1734 2.1267 34 1 7.3065 0.8751 0.1538 35 1 7.9129 0.8761 -4.4128 36 1 9.3566 0.9835 -3.3751 37 1 7.8128 3.3156 -4.6007 38 1 9.4479 2.7718 -5.0478 39 1 10.3901 5.0092 -4.5090 40 1 8.7593 5.5856 -4.0893 41 1 10.0893 5.7469 -2.9174 42 1 10.8494 2.2717 -2.9719 43 1 13.8985 3.3080 0.1894 44 1 8.7248 4.5450 -1.2206 45 1 7.3943 4.3419 -2.3862 46 1 7.2039 2.6159 -0.6599 47 1 8.8930 2.1169 -0.9256 48 1 3.6900 1.1723 -2.1412 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733864731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:31 Heat of formation + Delta-G solvation = -18.529875 kcal Electronic energy + Delta-G solvation = -29421.650849 eV Core-core repulsion = 25477.538172 eV Total energy + Delta-G solvation = -3944.112677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.01695 -39.63470 -38.13765 -37.83571 -34.76331 -33.26206 -32.72641 -32.07234 -30.67077 -29.76503 -27.97523 -27.80525 -25.90989 -24.92453 -23.63542 -23.34226 -22.74882 -22.12694 -19.91650 -18.33688 -17.83740 -17.41003 -17.17435 -16.80520 -16.79880 -16.02818 -15.62932 -15.44036 -14.97039 -14.62678 -14.37727 -13.88049 -13.83418 -13.66901 -13.40607 -13.35558 -13.30690 -12.99172 -12.80291 -12.56460 -12.20001 -12.16078 -11.96367 -11.82046 -11.45436 -11.32471 -11.04233 -10.89816 -10.88301 -10.50334 -10.24697 -10.15991 -10.13331 -10.01883 -9.84609 -9.52769 -9.52069 -9.19748 -8.98430 -8.42504 -7.31349 -5.80647 -3.16584 0.53879 0.91786 2.67831 3.03856 3.33013 3.33537 3.36073 3.43318 3.76806 4.14162 4.37481 4.45416 4.54985 4.63669 4.65649 4.71643 4.86918 4.96113 5.02285 5.05126 5.13138 5.18038 5.28322 5.30515 5.37576 5.38336 5.46966 5.57871 5.60715 5.80250 5.83386 5.88724 5.89854 5.99954 6.11134 6.25109 6.28771 6.32572 6.36897 6.49793 6.58411 6.65765 6.69424 6.89409 6.97268 7.50873 7.66186 7.94789 8.16136 8.38548 9.16173 9.89028 10.08715 11.37413 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.003041 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.627511 B = 9206.250169 C = 9687.237943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.109 3.891 4 C -0.155 4.155 5 C 0.138 3.862 6 N -0.483 5.483 7 C 0.143 3.857 8 C -0.178 4.178 9 C 0.562 3.438 10 O -0.544 6.544 11 N -0.593 5.593 12 C 0.116 3.884 13 C -0.133 4.133 14 C 0.204 3.796 15 C -0.150 4.150 16 N -0.742 5.742 17 C -0.238 4.238 18 H 0.092 0.908 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.877 3.123 22 H -0.285 1.285 23 H -0.278 1.278 24 H -0.292 1.292 25 C -0.132 4.132 26 C 0.105 3.895 27 C -0.004 4.004 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.083 0.917 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.632 -2.923 -1.490 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.032 3.968 4 C -0.157 4.157 5 C -0.019 4.019 6 N -0.191 5.191 7 C -0.015 4.015 8 C -0.183 4.183 9 C 0.349 3.651 10 O -0.423 6.423 11 N -0.324 5.324 12 C -0.007 4.007 13 C -0.171 4.171 14 C 0.113 3.887 15 C -0.209 4.209 16 N -0.386 5.386 17 C -0.368 4.368 18 H 0.110 0.890 19 C -0.189 4.189 20 N -0.580 5.580 21 Si 0.708 3.292 22 H -0.211 1.211 23 H -0.204 1.204 24 H -0.219 1.219 25 C -0.172 4.172 26 C -0.017 4.017 27 C -0.030 4.030 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.177 0.823 34 H 0.186 0.814 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.093 0.907 47 H 0.111 0.889 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.166 -3.304 -1.007 22.434 hybrid contribution 0.074 -0.807 -1.154 1.410 sum -22.092 -4.111 -2.161 22.575 Atomic orbital electron populations 1.22778 0.80673 1.03041 1.00109 1.87995 1.19853 1.27161 1.95435 1.21213 0.88648 0.85371 1.01521 1.20499 0.95717 1.05264 0.94253 1.22890 0.90027 0.91542 0.97466 1.67827 1.07738 1.12799 1.30727 1.23323 1.00907 0.90785 0.86435 1.20974 0.94935 1.07029 0.95382 1.18047 0.80727 0.79721 0.86583 1.90761 1.70019 1.42899 1.38648 1.48054 1.19514 1.43884 1.20992 1.21597 0.93937 0.97861 0.87259 1.22140 1.01064 0.95277 0.98635 1.19489 0.86663 0.91842 0.90730 1.22183 0.99585 0.97978 1.01136 1.42895 1.26580 1.24842 1.44307 1.18955 1.03693 1.04803 1.09299 0.88994 1.24630 0.97670 0.98138 0.98443 1.69681 1.18812 1.39661 1.29839 0.86676 0.78294 0.85467 0.78790 1.21130 1.20399 1.21876 1.22267 0.98615 0.95863 1.00491 1.22090 1.00490 0.90655 0.88445 1.21495 0.92166 0.90674 0.98673 0.89428 0.93864 0.93884 0.91712 0.91963 0.82272 0.81388 0.89401 0.91049 0.91356 0.90631 0.93124 0.94372 0.91947 0.80587 0.93082 0.89877 0.93064 0.90727 0.88931 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.70 10.69 -35.23 -0.38 -4.07 16 3 C 0.11 0.87 6.08 36.00 0.22 1.09 16 4 C -0.16 -1.61 5.52 -104.54 -0.58 -2.19 16 5 C 0.14 1.49 10.85 -17.47 -0.19 1.30 16 6 N -0.48 -6.38 10.35 -12.91 -0.13 -6.52 16 7 C 0.14 1.93 8.58 -17.13 -0.15 1.78 16 8 C -0.18 -2.44 5.11 -104.82 -0.54 -2.98 16 9 C 0.56 8.82 7.34 -12.33 -0.09 8.73 16 10 O -0.54 -9.94 16.37 5.31 0.09 -9.85 16 11 N -0.59 -9.06 2.97 -173.90 -0.52 -9.57 16 12 C 0.12 1.76 6.17 -3.71 -0.02 1.74 16 13 C -0.13 -1.95 4.96 -26.61 -0.13 -2.08 16 14 C 0.20 3.47 0.74 -131.78 -0.10 3.37 16 15 C -0.15 -2.49 8.44 37.16 0.31 -2.18 16 16 N -0.74 -15.50 3.94 -47.19 -0.19 -15.69 16 17 C -0.24 -6.01 9.16 -15.06 -0.14 -6.14 16 18 H 0.09 2.50 6.93 -52.49 -0.36 2.14 16 19 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 20 N -0.93 -27.90 13.97 55.49 0.78 -27.13 16 21 Si 0.88 21.11 27.74 -169.99 -4.71 16.40 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 C -0.13 -2.11 4.70 -26.63 -0.13 -2.23 16 26 C 0.11 1.61 4.66 -3.72 -0.02 1.59 16 27 C 0.00 -0.04 9.49 -38.87 -0.37 -0.41 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.17 2.22 6.65 -52.49 -0.35 1.87 16 35 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 36 H 0.07 1.15 6.94 -51.93 -0.36 0.79 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.16 7.27 -51.93 -0.38 0.78 16 42 H 0.36 7.61 4.33 -40.82 -0.18 7.44 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.08 1.46 7.32 -51.93 -0.38 1.08 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.03 4.78 -51.93 -0.25 0.78 16 47 H 0.09 1.63 7.73 -51.93 -0.40 1.22 16 48 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -31.95 379.75 -7.49 -39.44 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.26 Total: 8.49 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.89 Total: 2.77 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.06 Total: -58.91 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.29 Total: -13.92 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.95 -7.49 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733864731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.914 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds