Wall clock time and date at job start Tue Mar 31 2020 17:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38606 * 120.32930 * 2 1 4 4 N 1.31490 * 120.90598 * 179.97438 * 3 2 1 5 5 C 1.32752 * 121.64030 * 0.02562 * 4 3 2 6 6 C 1.48172 * 119.71954 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99592 * 167.81124 * 6 5 4 8 8 N 1.34769 * 119.99991 * 347.80248 * 6 5 4 9 9 C 1.47151 * 120.98692 * 358.60912 * 8 6 5 10 10 C 1.53297 * 108.38609 * 230.50920 * 9 8 6 11 11 O 1.42962 * 109.22106 * 307.69591 * 10 9 8 12 12 C 1.42959 * 114.16586 * 62.58031 * 11 10 9 13 13 H 1.08996 * 109.51709 * 57.34245 * 12 11 10 14 14 C 1.53001 * 109.50813 * 177.44491 * 12 11 10 15 15 H 1.09007 * 109.46805 * 174.99924 * 14 12 11 16 16 C 1.53000 * 109.47451 * 55.00065 * 14 12 11 17 17 N 1.46500 * 109.47175 * 294.99772 * 14 12 11 18 18 C 1.36946 * 119.99878 * 205.00368 * 17 14 12 19 19 H 1.08000 * 119.99882 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99901 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99853 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46959 * 60.00099 * 22 20 18 24 24 H 1.48496 * 109.46810 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46931 * 299.99915 * 22 20 18 26 26 C 1.47151 * 120.98325 * 178.31932 * 8 6 5 27 27 C 1.39269 * 120.55547 * 359.97438 * 5 4 3 28 28 C 1.38588 * 120.32648 * 179.71941 * 2 1 3 29 29 C 1.50706 * 120.74903 * 0.02562 * 28 2 1 30 30 H 1.09004 * 109.47210 * 89.99569 * 1 2 3 31 31 H 1.09004 * 109.46806 * 330.00228 * 1 2 3 32 32 H 1.09000 * 109.47310 * 210.00471 * 1 2 3 33 33 H 1.08008 * 119.54503 * 359.97214 * 3 2 1 34 34 H 1.09009 * 109.68093 * 350.22848 * 9 8 6 35 35 H 1.08995 * 109.68955 * 110.78232 * 9 8 6 36 36 H 1.09006 * 109.51015 * 67.61832 * 10 9 8 37 37 H 1.08997 * 109.51453 * 187.76904 * 10 9 8 38 38 H 1.09007 * 109.47001 * 299.99739 * 16 14 12 39 39 H 1.09005 * 109.47304 * 59.99647 * 16 14 12 40 40 H 1.08999 * 109.47214 * 180.02562 * 16 14 12 41 41 H 0.96995 * 120.00292 * 25.00359 * 17 14 12 42 42 H 0.96998 * 119.99989 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.68848 * 249.21719 * 26 8 6 44 44 H 1.09007 * 109.68107 * 9.77095 * 26 8 6 45 45 H 1.08000 * 120.46463 * 180.02562 * 27 5 4 46 46 H 1.08999 * 109.46845 * 90.00037 * 29 28 2 47 47 H 1.08996 * 109.46528 * 209.99758 * 29 28 2 48 48 H 1.08995 * 109.47036 * 330.00010 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0865 0.0005 6 6 5.7098 0.1510 0.0017 7 8 6.3614 -0.8503 0.2239 8 7 6.3335 1.3202 -0.2439 9 6 5.5665 2.5392 -0.5457 10 6 6.1387 3.1671 -1.8218 11 8 7.5519 3.3261 -1.6751 12 6 8.2650 2.0982 -1.5096 13 1 8.0659 1.4442 -2.3584 14 6 9.7655 2.3859 -1.4270 15 1 10.3014 1.4613 -1.2122 16 6 10.0299 3.3995 -0.3119 17 7 10.2287 2.9334 -2.7045 18 6 11.5410 2.7979 -3.0719 19 1 12.2344 2.2877 -2.4197 20 6 11.9801 3.3171 -4.2821 21 7 11.1350 3.9392 -5.0766 22 14 13.7702 3.1328 -4.7829 23 1 14.1154 1.6908 -4.8649 24 1 13.9811 3.7679 -6.1086 25 1 14.6369 3.7928 -3.7738 26 6 7.8014 1.4170 -0.2120 27 6 3.5923 -1.1519 0.0005 28 6 2.2067 -1.1962 0.0059 29 6 1.4778 -2.5153 0.0117 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 0.8901 0.5138 32 1 -0.3634 -0.8899 0.5139 33 1 1.6648 2.1305 -0.0005 34 1 4.5179 2.2844 -0.7004 35 1 5.6554 3.2433 0.2816 36 1 5.9318 2.5168 -2.6718 37 1 5.6779 4.1409 -1.9867 38 1 9.4940 4.3241 -0.5266 39 1 9.6852 2.9922 0.6387 40 1 11.0988 3.6047 -0.2534 41 1 9.6061 3.3919 -3.2900 42 1 11.4419 4.3023 -5.9221 43 1 8.1117 2.0100 0.6484 44 1 8.2338 0.4186 -0.1455 45 1 4.1695 -2.0647 0.0010 46 1 1.3025 -2.8380 -1.0145 47 1 2.0810 -3.2612 0.5293 48 1 0.5230 -2.4004 0.5246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734180994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:36 Heat of formation + Delta-G solvation = -12.130828 kcal Electronic energy + Delta-G solvation = -28979.971515 eV Core-core repulsion = 25036.136321 eV Total energy + Delta-G solvation = -3943.835193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26990 -39.77844 -38.22344 -35.65719 -35.04701 -34.29443 -32.86027 -32.37225 -30.21048 -29.10288 -28.32215 -27.98733 -26.76673 -24.71629 -23.41657 -23.29738 -23.13584 -21.67285 -19.72955 -19.48072 -17.76267 -17.28382 -16.92510 -16.16872 -15.97355 -15.72459 -15.57790 -15.23955 -14.91337 -14.76761 -14.40331 -14.27031 -13.87104 -13.58643 -13.45361 -13.37898 -13.25907 -13.22049 -12.87838 -12.78747 -12.51435 -12.34604 -12.03562 -11.96882 -11.74055 -11.21859 -11.02740 -10.77764 -10.66779 -10.50050 -10.38045 -10.24417 -9.96250 -9.90823 -9.73046 -9.60268 -9.35961 -9.09712 -8.83210 -8.34887 -6.87307 -5.67926 -2.96444 0.29415 0.76054 2.51018 2.80514 3.46559 3.49406 3.53336 3.54543 3.75905 4.15921 4.18598 4.21464 4.37823 4.40261 4.63681 4.73429 4.93043 4.98362 4.98510 5.07305 5.15922 5.21943 5.27343 5.33121 5.36949 5.42859 5.46167 5.48252 5.58930 5.64216 5.76879 5.83473 5.85930 5.93149 6.01793 6.06730 6.12487 6.26719 6.32835 6.54498 6.59504 6.73039 6.89440 7.21898 7.25402 7.39518 7.61905 7.76500 8.02850 8.50418 9.61948 10.20429 10.57279 11.54557 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.002367 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.914769 B =11827.738018 C =12008.609635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 C 0.097 3.903 4 N -0.450 5.450 5 C 0.082 3.918 6 C 0.568 3.432 7 O -0.537 6.537 8 N -0.588 5.588 9 C 0.034 3.966 10 C 0.045 3.955 11 O -0.361 6.361 12 C 0.078 3.922 13 H 0.062 0.938 14 C 0.185 3.815 15 H 0.059 0.941 16 C -0.162 4.162 17 N -0.719 5.719 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.079 3.921 27 C -0.107 4.107 28 C -0.049 4.049 29 C -0.120 4.120 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.034 0.966 40 H 0.051 0.949 41 H 0.389 0.611 42 H 0.255 0.745 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.149 0.851 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.384 -8.497 12.502 30.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.122 4.122 3 C -0.062 4.062 4 N -0.161 5.161 5 C -0.054 4.054 6 C 0.354 3.646 7 O -0.414 6.414 8 N -0.319 5.319 9 C -0.089 4.089 10 C -0.033 4.033 11 O -0.279 6.279 12 C 0.019 3.981 13 H 0.080 0.920 14 C 0.074 3.926 15 H 0.076 0.924 16 C -0.222 4.222 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.043 4.043 27 C -0.128 4.128 28 C -0.056 4.056 29 C -0.176 4.176 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.182 0.818 34 H 0.172 0.828 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.223 0.777 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.117 0.883 45 H 0.166 0.834 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.260 -8.110 12.581 29.362 hybrid contribution 0.302 -0.681 -0.526 0.912 sum -24.958 -8.791 12.055 29.078 Atomic orbital electron populations 1.20839 0.89831 1.03548 1.03031 1.21003 0.97822 0.93541 0.99859 1.22890 0.89632 0.97891 0.95803 1.67464 1.08005 1.28710 1.11944 1.21152 0.94127 0.89695 1.00462 1.17885 0.85795 0.83213 0.77658 1.90782 1.65839 1.34453 1.50318 1.48016 1.07420 1.09136 1.67370 1.23843 1.01104 0.85829 0.98106 1.22990 0.83052 1.01348 0.95946 1.88072 1.17157 1.29519 1.93195 1.23002 0.94266 0.86001 0.94845 0.92000 1.20198 0.87846 0.95895 0.88658 0.92354 1.22410 1.01471 1.01105 0.97209 1.42350 1.08760 1.67464 1.17478 1.19215 0.86208 1.30188 1.01294 0.91231 1.24739 0.97733 1.01199 0.97346 1.69674 1.33552 1.42724 1.12050 0.86275 0.84983 0.77503 0.77475 1.21333 1.21775 1.21312 1.22661 0.78666 1.03230 0.99774 1.21982 0.94164 0.98989 0.97629 1.20233 0.93189 0.95974 0.96237 1.20904 1.00466 0.92949 1.03292 0.90368 0.90818 0.90744 0.81828 0.82773 0.91062 0.93451 0.88155 0.92423 0.94680 0.92942 0.77673 0.93566 0.89912 0.88270 0.83370 0.90112 0.90655 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.40 9.66 36.00 0.35 -0.05 16 2 C -0.12 -0.80 5.91 -104.36 -0.62 -1.41 16 3 C 0.10 0.73 10.86 -17.56 -0.19 0.54 16 4 N -0.45 -4.75 6.09 -9.79 -0.06 -4.81 16 5 C 0.08 1.01 6.60 -83.01 -0.55 0.46 16 6 C 0.57 8.69 7.68 -12.18 -0.09 8.59 16 7 O -0.54 -9.52 15.86 5.35 0.08 -9.44 16 8 N -0.59 -8.84 3.01 -173.01 -0.52 -9.36 16 9 C 0.03 0.44 6.17 -3.53 -0.02 0.41 16 10 C 0.04 0.64 6.98 37.31 0.26 0.90 16 11 O -0.36 -6.67 9.24 -35.23 -0.33 -7.00 16 12 C 0.08 1.45 2.62 -26.36 -0.07 1.38 16 13 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.18 3.89 2.77 -67.93 -0.19 3.70 16 15 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 16 C -0.16 -3.14 9.06 37.16 0.34 -2.80 16 17 N -0.72 -18.90 5.10 -53.42 -0.27 -19.18 16 18 C -0.24 -6.80 9.93 -15.06 -0.15 -6.95 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 22 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.08 1.27 5.84 -3.32 -0.02 1.25 16 27 C -0.11 -1.10 9.33 -39.06 -0.36 -1.47 16 28 C -0.05 -0.37 5.91 -104.35 -0.62 -0.99 16 29 C -0.12 -0.56 9.67 36.01 0.35 -0.21 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.18 8.09 -51.93 -0.42 -0.24 16 32 H 0.07 0.20 6.05 -51.93 -0.31 -0.12 16 33 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.16 1.80 3.92 -88.13 -0.35 1.45 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.18 7.56 -51.93 -0.39 0.78 16 39 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.39 11.04 7.58 -40.82 -0.31 10.73 16 42 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.08 1.27 6.28 -51.93 -0.33 0.95 16 44 H 0.10 1.64 7.07 -51.92 -0.37 1.27 16 45 H 0.15 1.50 7.69 -52.49 -0.40 1.10 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 48 H 0.08 0.24 6.07 -51.93 -0.32 -0.07 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -34.68 381.85 -8.62 -43.30 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.30 Total: 8.19 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.68 Total: 2.86 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.13 Total: -61.60 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.24 Total: -16.43 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.68 -8.62 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734180994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.169 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds