Wall clock time and date at job start Tue Mar 31 2020 17:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38606 * 120.32930 * 2 1 4 4 N 1.31490 * 120.90598 * 179.97438 * 3 2 1 5 5 C 1.32752 * 121.64030 * 0.02562 * 4 3 2 6 6 C 1.48172 * 119.71954 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99592 * 167.81124 * 6 5 4 8 8 N 1.34769 * 119.99991 * 347.80248 * 6 5 4 9 9 C 1.47151 * 120.98692 * 358.60912 * 8 6 5 10 10 C 1.53297 * 108.38609 * 230.50920 * 9 8 6 11 11 O 1.42962 * 109.22106 * 307.69591 * 10 9 8 12 12 C 1.42959 * 114.16586 * 62.58031 * 11 10 9 13 13 H 1.08996 * 109.51709 * 57.34245 * 12 11 10 14 14 C 1.53001 * 109.50813 * 177.44491 * 12 11 10 15 15 H 1.09007 * 109.46805 * 174.99924 * 14 12 11 16 16 C 1.53000 * 109.47451 * 55.00065 * 14 12 11 17 17 N 1.46500 * 109.47175 * 294.99772 * 14 12 11 18 18 C 1.36946 * 119.99878 * 205.00368 * 17 14 12 19 19 H 1.08000 * 119.99882 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99901 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99853 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46959 * 60.00099 * 22 20 18 24 24 H 1.48496 * 109.46810 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46931 * 299.99915 * 22 20 18 26 26 C 1.47151 * 120.98325 * 178.31932 * 8 6 5 27 27 C 1.39269 * 120.55547 * 359.97438 * 5 4 3 28 28 C 1.38588 * 120.32648 * 179.71941 * 2 1 3 29 29 C 1.50706 * 120.74903 * 0.02562 * 28 2 1 30 30 H 1.09004 * 109.47210 * 89.99569 * 1 2 3 31 31 H 1.09004 * 109.46806 * 330.00228 * 1 2 3 32 32 H 1.09000 * 109.47310 * 210.00471 * 1 2 3 33 33 H 1.08008 * 119.54503 * 359.97214 * 3 2 1 34 34 H 1.09009 * 109.68093 * 350.22848 * 9 8 6 35 35 H 1.08995 * 109.68955 * 110.78232 * 9 8 6 36 36 H 1.09006 * 109.51015 * 67.61832 * 10 9 8 37 37 H 1.08997 * 109.51453 * 187.76904 * 10 9 8 38 38 H 1.09007 * 109.47001 * 299.99739 * 16 14 12 39 39 H 1.09005 * 109.47304 * 59.99647 * 16 14 12 40 40 H 1.08999 * 109.47214 * 180.02562 * 16 14 12 41 41 H 0.96995 * 120.00292 * 25.00359 * 17 14 12 42 42 H 0.96998 * 119.99989 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.68848 * 249.21719 * 26 8 6 44 44 H 1.09007 * 109.68107 * 9.77095 * 26 8 6 45 45 H 1.08000 * 120.46463 * 180.02562 * 27 5 4 46 46 H 1.08999 * 109.46845 * 90.00037 * 29 28 2 47 47 H 1.08996 * 109.46528 * 209.99758 * 29 28 2 48 48 H 1.08995 * 109.47036 * 330.00010 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0865 0.0005 6 6 5.7098 0.1510 0.0017 7 8 6.3614 -0.8503 0.2239 8 7 6.3335 1.3202 -0.2439 9 6 5.5665 2.5392 -0.5457 10 6 6.1387 3.1671 -1.8218 11 8 7.5519 3.3261 -1.6751 12 6 8.2650 2.0982 -1.5096 13 1 8.0659 1.4442 -2.3584 14 6 9.7655 2.3859 -1.4270 15 1 10.3014 1.4613 -1.2122 16 6 10.0299 3.3995 -0.3119 17 7 10.2287 2.9334 -2.7045 18 6 11.5410 2.7979 -3.0719 19 1 12.2344 2.2877 -2.4197 20 6 11.9801 3.3171 -4.2821 21 7 11.1350 3.9392 -5.0766 22 14 13.7702 3.1328 -4.7829 23 1 14.1154 1.6908 -4.8649 24 1 13.9811 3.7679 -6.1086 25 1 14.6369 3.7928 -3.7738 26 6 7.8014 1.4170 -0.2120 27 6 3.5923 -1.1519 0.0005 28 6 2.2067 -1.1962 0.0059 29 6 1.4778 -2.5153 0.0117 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 0.8901 0.5138 32 1 -0.3634 -0.8899 0.5139 33 1 1.6648 2.1305 -0.0005 34 1 4.5179 2.2844 -0.7004 35 1 5.6554 3.2433 0.2816 36 1 5.9318 2.5168 -2.6718 37 1 5.6779 4.1409 -1.9867 38 1 9.4940 4.3241 -0.5266 39 1 9.6852 2.9922 0.6387 40 1 11.0988 3.6047 -0.2534 41 1 9.6061 3.3919 -3.2900 42 1 11.4419 4.3023 -5.9221 43 1 8.1117 2.0100 0.6484 44 1 8.2338 0.4186 -0.1455 45 1 4.1695 -2.0647 0.0010 46 1 1.3025 -2.8380 -1.0145 47 1 2.0810 -3.2612 0.5293 48 1 0.5230 -2.4004 0.5246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734180994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:35 Heat of formation + Delta-G solvation = -35.241109 kcal Electronic energy + Delta-G solvation = -28980.973652 eV Core-core repulsion = 25036.136321 eV Total energy + Delta-G solvation = -3944.837330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13895 -40.85689 -39.51435 -37.17434 -36.14137 -35.35235 -34.31180 -33.45437 -31.87794 -30.01697 -29.65941 -28.83838 -27.78848 -26.40544 -24.93994 -24.38563 -23.80615 -22.80585 -21.19532 -20.65195 -19.30869 -18.62744 -18.04757 -17.35989 -17.07830 -16.96084 -16.69812 -16.35508 -16.02323 -15.86145 -15.77914 -15.37212 -15.22232 -15.02702 -14.46201 -14.40869 -14.22160 -13.98038 -13.82450 -13.73041 -13.56001 -13.51532 -13.16340 -12.94613 -12.80166 -12.54319 -12.49004 -12.44802 -12.35862 -12.22589 -11.87298 -11.65478 -11.64498 -11.46575 -11.18344 -10.93327 -10.55996 -10.02129 -9.98323 -9.58911 -9.01686 -7.92123 -5.21415 -0.46054 0.13108 1.46502 1.50455 1.53251 1.56281 1.69858 2.56562 2.67353 2.76914 2.95729 3.40746 3.47780 3.58798 3.72229 3.84005 3.86190 3.90323 3.96650 4.04561 4.09913 4.21175 4.32939 4.37272 4.51770 4.53501 4.59216 4.62766 4.68709 4.71378 4.73028 4.81184 4.89605 4.93234 4.98189 5.03812 5.07823 5.13255 5.17596 5.24208 5.36805 5.43880 5.50706 5.60125 5.75300 6.15894 6.24257 6.29326 6.57871 6.91624 7.34888 8.09908 8.35617 9.31349 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.002367 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.914769 B =11827.738018 C =12008.609635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.106 4.106 3 C 0.094 3.906 4 N -0.463 5.463 5 C 0.052 3.948 6 C 0.562 3.438 7 O -0.573 6.573 8 N -0.593 5.593 9 C 0.041 3.959 10 C 0.040 3.960 11 O -0.383 6.383 12 C 0.092 3.908 13 H 0.037 0.963 14 C 0.177 3.823 15 H 0.060 0.940 16 C -0.148 4.148 17 N -0.732 5.732 18 C -0.241 4.241 19 H 0.077 0.923 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.975 3.025 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.277 1.277 26 C 0.089 3.911 27 C -0.117 4.117 28 C -0.052 4.052 29 C -0.119 4.119 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.198 0.802 34 H 0.174 0.826 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.126 0.874 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.139 0.861 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.052 -8.642 13.817 33.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.108 4.108 3 C -0.065 4.065 4 N -0.175 5.175 5 C -0.083 4.083 6 C 0.351 3.649 7 O -0.453 6.453 8 N -0.324 5.324 9 C -0.080 4.080 10 C -0.038 4.038 11 O -0.302 6.302 12 C 0.033 3.967 13 H 0.055 0.945 14 C 0.068 3.932 15 H 0.077 0.923 16 C -0.207 4.207 17 N -0.373 5.373 18 C -0.373 4.373 19 H 0.095 0.905 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.804 3.196 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.203 1.203 26 C -0.035 4.035 27 C -0.138 4.138 28 C -0.059 4.059 29 C -0.175 4.175 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.215 0.785 34 H 0.190 0.810 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.144 0.856 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.156 0.844 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -27.941 -8.272 13.946 32.305 hybrid contribution 0.912 -0.666 -0.881 1.433 sum -27.029 -8.938 13.065 31.323 Atomic orbital electron populations 1.20964 0.86960 1.05067 1.04169 1.21436 0.99727 0.92631 0.97051 1.23512 0.88620 0.99827 0.94571 1.67202 1.09537 1.28035 1.12754 1.20736 0.92413 0.91099 1.04017 1.18432 0.87343 0.82517 0.76605 1.90739 1.67073 1.35528 1.51990 1.48121 1.06893 1.09967 1.67420 1.23975 1.01673 0.84975 0.97388 1.23259 0.81105 1.02839 0.96552 1.88025 1.19393 1.29351 1.93409 1.22622 0.92911 0.85927 0.95265 0.94494 1.20421 0.89602 0.96031 0.87143 0.92254 1.22209 1.00509 1.00024 0.97989 1.42523 1.07933 1.67706 1.19104 1.19631 0.87304 1.29053 1.01270 0.90469 1.25597 1.02067 1.01721 0.97662 1.69847 1.35508 1.44378 1.12367 0.85186 0.79947 0.77681 0.76792 1.20419 1.22194 1.20311 1.22425 0.79973 1.02525 0.98531 1.22033 0.95617 0.97967 0.98211 1.20582 0.92093 0.97928 0.95334 1.20994 1.01037 0.91296 1.04172 0.89137 0.89157 0.89474 0.78483 0.81045 0.90224 0.94351 0.85599 0.93569 0.91240 0.94186 0.79348 0.94112 0.88745 0.89117 0.84360 0.89182 0.90747 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.28 9.66 71.23 0.69 0.41 16 2 C -0.11 -1.07 5.91 -19.69 -0.12 -1.19 16 3 C 0.09 1.15 10.86 84.83 0.92 2.07 16 4 N -0.46 -9.13 6.09 -184.90 -1.13 -10.26 16 5 C 0.05 1.29 6.60 41.89 0.28 1.56 16 6 C 0.56 17.74 7.68 86.88 0.67 18.41 16 7 O -0.57 -21.37 15.86 -3.76 -0.06 -21.43 16 8 N -0.59 -18.04 3.01 -819.57 -2.47 -20.51 16 9 C 0.04 1.04 6.17 86.35 0.53 1.57 16 10 C 0.04 1.13 6.98 72.08 0.50 1.63 16 11 O -0.38 -14.34 9.24 -148.98 -1.38 -15.72 16 12 C 0.09 3.52 2.62 30.83 0.08 3.60 16 13 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 14 C 0.18 7.60 2.77 44.99 0.12 7.73 16 15 H 0.06 2.53 8.08 -2.38 -0.02 2.51 16 16 C -0.15 -5.69 9.06 71.98 0.65 -5.03 16 17 N -0.73 -39.62 5.10 -322.92 -1.65 -41.27 16 18 C -0.24 -13.99 9.93 84.03 0.83 -13.15 16 19 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 21 N -0.97 -61.90 13.06 21.65 0.28 -61.61 16 22 Si 0.98 47.81 29.55 68.60 2.03 49.84 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 C 0.09 2.90 5.84 86.49 0.51 3.40 16 27 C -0.12 -2.41 9.33 22.61 0.21 -2.20 16 28 C -0.05 -0.69 5.91 -19.69 -0.12 -0.80 16 29 C -0.12 -0.81 9.67 71.24 0.69 -0.12 16 30 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.09 -0.01 8.09 -2.38 -0.02 -0.03 16 32 H 0.09 0.05 6.05 -2.39 -0.01 0.03 16 33 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 34 H 0.17 3.79 3.92 -73.86 -0.29 3.50 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.15 8.14 -2.38 -0.02 1.14 16 37 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.05 1.87 7.56 -2.38 -0.02 1.85 16 39 H 0.07 2.17 6.42 -2.38 -0.02 2.16 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.37 22.11 7.58 -92.71 -0.70 21.41 16 42 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.09 2.83 6.28 -2.39 -0.02 2.82 16 44 H 0.09 3.11 7.07 -2.38 -0.02 3.10 16 45 H 0.14 2.99 7.69 -2.91 -0.02 2.97 16 46 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.07 0.54 8.10 -2.39 -0.02 0.52 16 48 H 0.10 0.25 6.07 -2.39 -0.01 0.23 16 Total: -1.00 -77.93 381.85 2.55 -75.38 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.00 Total: 31.91 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.92 Total: 13.67 kcal Atomic # 7 Polarization: -128.69 SS G_CDS: -4.96 Total: -133.65 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.44 Total: -37.15 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -77.93 2.55 -75.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734180994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.137 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds