Wall clock time and date at job start Tue Mar 31 2020 17:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38609 * 120.32609 * 2 1 4 4 N 1.31490 * 120.90293 * 179.74506 * 3 2 1 5 5 C 1.32752 * 121.64289 * 0.25587 * 4 3 2 6 6 C 1.48166 * 119.71928 * 180.02562 * 5 4 3 7 7 O 1.21522 * 119.99973 * 167.80336 * 6 5 4 8 8 N 1.34773 * 120.00280 * 347.80862 * 6 5 4 9 9 C 1.47155 * 120.98325 * 358.59936 * 8 6 5 10 10 C 1.53288 * 108.38463 * 230.51471 * 9 8 6 11 11 O 1.42966 * 109.22361 * 307.69219 * 10 9 8 12 12 C 1.42965 * 114.16161 * 62.58505 * 11 10 9 13 13 H 1.08998 * 109.51169 * 57.39244 * 12 11 10 14 14 C 1.53005 * 109.51127 * 177.49376 * 12 11 10 15 15 H 1.08993 * 109.46984 * 184.99884 * 14 12 11 16 16 C 1.53004 * 109.46980 * 305.00019 * 14 12 11 17 17 N 1.46504 * 109.46710 * 64.99776 * 14 12 11 18 18 C 1.36943 * 119.99373 * 154.99925 * 17 14 12 19 19 H 1.07998 * 120.00066 * 0.02562 * 18 17 14 20 20 C 1.38811 * 119.99632 * 179.97438 * 18 17 14 21 21 N 1.31618 * 120.00229 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47212 * 60.00397 * 22 20 18 24 24 H 1.48499 * 109.47062 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47026 * 299.99989 * 22 20 18 26 26 C 1.47159 * 120.98259 * 178.31675 * 8 6 5 27 27 C 1.39267 * 120.55463 * 359.97438 * 5 4 3 28 28 C 1.38588 * 120.32738 * 180.25119 * 2 1 3 29 29 C 1.50701 * 120.75555 * 359.96771 * 28 2 1 30 30 H 1.08997 * 109.46936 * 90.00530 * 1 2 3 31 31 H 1.09001 * 109.46880 * 210.00172 * 1 2 3 32 32 H 1.08993 * 109.47685 * 330.00390 * 1 2 3 33 33 H 1.08001 * 119.54614 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.67922 * 350.23772 * 9 8 6 35 35 H 1.08998 * 109.67977 * 110.78687 * 9 8 6 36 36 H 1.08998 * 109.51543 * 67.62136 * 10 9 8 37 37 H 1.09006 * 109.51321 * 187.77364 * 10 9 8 38 38 H 1.09000 * 109.46753 * 299.99974 * 16 14 12 39 39 H 1.08993 * 109.47084 * 59.99637 * 16 14 12 40 40 H 1.09001 * 109.46731 * 180.02562 * 16 14 12 41 41 H 0.96995 * 120.00590 * 335.00160 * 17 14 12 42 42 H 0.97001 * 120.00164 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.68145 * 249.20880 * 26 8 6 44 44 H 1.09000 * 109.68164 * 9.76359 * 26 8 6 45 45 H 1.08000 * 120.46594 * 180.02562 * 27 5 4 46 46 H 1.08996 * 109.47305 * 270.28090 * 29 28 2 47 47 H 1.09000 * 109.46842 * 30.28331 * 29 28 2 48 48 H 1.08994 * 109.47132 * 150.27780 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2097 0.0050 5 6 4.2294 0.0866 0.0052 6 6 5.7096 0.1512 0.0116 7 8 6.3606 -0.8505 0.2342 8 7 6.3342 1.3210 -0.2294 9 6 5.5681 2.5405 -0.5315 10 6 6.1448 3.1709 -1.8043 11 8 7.5574 3.3299 -1.6524 12 6 8.2701 2.1016 -1.4868 13 1 8.0746 1.4497 -2.3382 14 6 9.7702 2.3893 -1.3973 15 1 10.3190 1.4483 -1.3604 16 6 10.2104 3.1887 -2.6254 17 7 10.0472 3.1641 -0.1852 18 6 11.2888 3.1142 0.3904 19 1 12.0638 2.5041 -0.0495 20 6 11.5516 3.8488 1.5385 21 7 10.6072 4.5928 2.0743 22 14 13.2454 3.7813 2.3232 23 1 14.2608 4.2599 1.3510 24 1 13.2671 4.6476 3.5292 25 1 13.5547 2.3823 2.7137 26 6 7.8021 1.4177 -0.1922 27 6 3.5923 -1.1518 0.0006 28 6 2.2067 -1.1962 -0.0052 29 6 1.4780 -2.5153 -0.0103 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 1.6647 2.1305 0.0004 34 1 4.5202 2.2859 -0.6902 35 1 5.6542 3.2429 0.2976 36 1 5.9408 2.5224 -2.6563 37 1 5.6844 4.1451 -1.9688 38 1 10.0041 2.6122 -3.5272 39 1 9.6615 4.1296 -2.6623 40 1 11.2791 3.3932 -2.5618 41 1 9.3513 3.7124 0.2097 42 1 10.7909 5.1064 2.8764 43 1 8.1093 2.0090 0.6703 44 1 8.2343 0.4192 -0.1262 45 1 4.1695 -2.0646 0.0012 46 1 1.2984 -2.8351 1.0161 47 1 0.5253 -2.4021 -0.5276 48 1 2.0832 -3.2628 -0.5231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734181000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:42 Heat of formation + Delta-G solvation = -13.028787 kcal Electronic energy + Delta-G solvation = -29268.990670 eV Core-core repulsion = 25325.116539 eV Total energy + Delta-G solvation = -3943.874132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16507 -39.65682 -38.12941 -35.58540 -35.01217 -34.20968 -32.77742 -32.18128 -30.07215 -29.02879 -28.32259 -28.03098 -26.96773 -24.17781 -23.41173 -23.25574 -23.09546 -21.61473 -19.65721 -19.41310 -17.65498 -17.30120 -16.88565 -16.05922 -15.93527 -15.60323 -15.50021 -15.00183 -14.86355 -14.54029 -14.48937 -14.13335 -13.71126 -13.42962 -13.37713 -13.29172 -13.26153 -13.14559 -12.95089 -12.71489 -12.51352 -12.24222 -11.97034 -11.80366 -11.58442 -11.21675 -11.06896 -10.76447 -10.71083 -10.37928 -10.27453 -10.21082 -9.98254 -9.83256 -9.78087 -9.49699 -9.27758 -8.96958 -8.84947 -8.20283 -6.85978 -5.67483 -2.95817 0.38226 0.83850 2.63333 2.98369 3.50089 3.54312 3.55163 3.56201 3.86890 4.18459 4.25149 4.29915 4.44617 4.50537 4.66338 4.81466 5.00397 5.08302 5.09464 5.12776 5.16236 5.30683 5.33023 5.41282 5.47407 5.50591 5.53515 5.54536 5.64786 5.65728 5.85009 5.86903 5.93743 5.98841 6.09231 6.16680 6.30644 6.40320 6.48918 6.54703 6.75544 6.76326 6.86721 7.22667 7.36304 7.55675 7.62750 7.77815 8.19206 8.50700 9.62615 10.20080 10.57214 11.54771 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.002700 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.648077 B =10367.062888 C =10707.559327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C 0.096 3.904 4 N -0.449 5.449 5 C 0.085 3.915 6 C 0.565 3.435 7 O -0.538 6.538 8 N -0.586 5.586 9 C 0.032 3.968 10 C 0.047 3.953 11 O -0.363 6.363 12 C 0.080 3.920 13 H 0.053 0.947 14 C 0.182 3.818 15 H 0.059 0.941 16 C -0.159 4.159 17 N -0.717 5.717 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.083 3.917 27 C -0.109 4.109 28 C -0.049 4.049 29 C -0.118 4.118 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.099 0.901 38 H 0.032 0.968 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.389 0.611 42 H 0.254 0.746 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.148 0.852 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.648 -10.206 -7.852 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.063 4.063 4 N -0.160 5.160 5 C -0.052 4.052 6 C 0.351 3.649 7 O -0.416 6.416 8 N -0.317 5.317 9 C -0.090 4.090 10 C -0.031 4.031 11 O -0.281 6.281 12 C 0.021 3.979 13 H 0.071 0.929 14 C 0.071 3.929 15 H 0.077 0.923 16 C -0.219 4.219 17 N -0.360 5.360 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.039 4.039 27 C -0.130 4.130 28 C -0.057 4.057 29 C -0.174 4.174 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.181 0.819 34 H 0.171 0.829 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.224 0.776 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.166 0.834 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.537 -9.807 -7.649 26.621 hybrid contribution 0.242 -0.576 0.629 0.886 sum -23.295 -10.382 -7.020 26.453 Atomic orbital electron populations 1.20795 0.89882 1.03541 1.02861 1.20998 0.97754 0.93554 1.00102 1.22900 0.89689 0.97857 0.95810 1.67495 1.07937 1.28742 1.11837 1.21222 0.94290 0.89616 1.00041 1.17875 0.85680 0.83380 0.77934 1.90779 1.65841 1.34570 1.50388 1.48081 1.07869 1.08762 1.67022 1.23813 1.00842 0.86174 0.98215 1.22973 0.83099 1.01079 0.95981 1.88079 1.17218 1.29633 1.93176 1.22949 0.94342 0.85706 0.94951 0.92900 1.20264 0.88525 0.95212 0.88854 0.92302 1.22319 1.01513 1.00994 0.97060 1.42409 1.12814 1.54271 1.26501 1.19199 0.89413 1.22602 1.05715 0.91269 1.24718 0.97605 0.99976 0.98574 1.69664 1.32056 1.33144 1.23034 0.86300 0.84198 0.77221 0.78647 1.21376 1.21821 1.21342 1.22614 0.77434 1.03297 1.00518 1.21984 0.94132 0.99013 0.97828 1.20231 0.93198 0.95913 0.96341 1.20863 1.00389 0.92990 1.03197 0.90517 0.90910 0.90776 0.81879 0.82904 0.90672 0.93916 0.88273 0.94939 0.92456 0.92865 0.77573 0.93576 0.88119 0.88641 0.83417 0.90198 0.90626 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.26 36.00 0.33 -0.13 16 2 C -0.12 -0.90 5.91 -104.36 -0.62 -1.52 16 3 C 0.10 0.82 10.86 -17.56 -0.19 0.63 16 4 N -0.45 -5.29 6.09 -9.80 -0.06 -5.35 16 5 C 0.08 1.15 6.60 -83.01 -0.55 0.60 16 6 C 0.57 9.57 7.68 -12.18 -0.09 9.48 16 7 O -0.54 -10.50 15.86 5.35 0.08 -10.41 16 8 N -0.59 -9.97 3.01 -173.01 -0.52 -10.49 16 9 C 0.03 0.47 6.17 -3.54 -0.02 0.45 16 10 C 0.05 0.67 6.98 37.31 0.26 0.93 16 11 O -0.36 -6.67 9.24 -35.23 -0.33 -6.99 16 12 C 0.08 1.47 2.59 -26.36 -0.07 1.40 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.18 3.80 2.81 -67.92 -0.19 3.60 16 15 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 16 C -0.16 -3.08 9.29 37.16 0.35 -2.74 16 17 N -0.72 -18.33 4.25 -53.42 -0.23 -18.55 16 18 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.63 13.06 55.49 0.72 -27.90 16 22 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C 0.08 1.60 5.84 -3.31 -0.02 1.58 16 27 C -0.11 -1.22 9.33 -39.05 -0.36 -1.58 16 28 C -0.05 -0.41 5.91 -104.35 -0.62 -1.03 16 29 C -0.12 -0.62 9.27 36.01 0.33 -0.28 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.24 6.82 -51.93 -0.35 -0.11 16 32 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 33 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.16 1.96 3.92 -88.13 -0.35 1.61 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.17 7.56 -51.93 -0.39 0.77 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.39 10.76 7.07 -40.82 -0.29 10.47 16 42 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.10 2.26 6.94 -51.93 -0.36 1.90 16 44 H 0.10 1.89 7.07 -51.93 -0.37 1.53 16 45 H 0.15 1.62 7.69 -52.49 -0.40 1.22 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.28 6.83 -51.93 -0.35 -0.08 16 48 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 LS Contribution 383.82 15.07 5.78 5.78 Total: -1.00 -34.00 383.82 -8.74 -42.74 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.48 Total: 9.22 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.70 Total: 4.09 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.08 Total: -62.29 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.24 Total: -17.41 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.00 -8.74 -42.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734181000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.710 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds