Wall clock time and date at job start Tue Mar 31 2020 17:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38601 * 120.32495 * 2 1 4 4 N 1.31499 * 120.90253 * 179.97438 * 3 2 1 5 5 C 1.32743 * 121.64465 * 0.02928 * 4 3 2 6 6 C 1.48165 * 119.72800 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00214 * 191.91711 * 6 5 4 8 8 N 1.34778 * 119.99888 * 11.91178 * 6 5 4 9 9 C 1.47163 * 120.97835 * 1.56129 * 8 6 5 10 10 C 1.53291 * 108.38541 * 129.44145 * 9 8 6 11 11 O 1.42965 * 109.22300 * 52.29708 * 10 9 8 12 12 C 1.42963 * 114.17016 * 297.42034 * 11 10 9 13 13 H 1.09006 * 109.51247 * 302.66122 * 12 11 10 14 14 C 1.52998 * 109.51325 * 182.55417 * 12 11 10 15 15 H 1.08999 * 109.46899 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47099 * 60.00462 * 14 12 11 17 17 N 1.46487 * 109.47242 * 299.99885 * 14 12 11 18 18 C 1.36936 * 120.00270 * 204.99920 * 17 14 12 19 19 H 1.08002 * 120.00011 * 0.02562 * 18 17 14 20 20 C 1.38815 * 120.00525 * 180.02562 * 18 17 14 21 21 N 1.31622 * 119.99609 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00294 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47308 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46701 * 120.00212 * 22 20 18 25 25 H 1.48501 * 109.47277 * 240.00296 * 22 20 18 26 26 C 1.47151 * 120.98595 * 181.53229 * 8 6 5 27 27 C 1.39277 * 120.55174 * 0.24713 * 5 4 3 28 28 C 1.38592 * 120.32550 * 179.97438 * 2 1 3 29 29 C 1.50698 * 120.75337 * 0.02562 * 28 2 1 30 30 H 1.09006 * 109.46794 * 90.00073 * 1 2 3 31 31 H 1.08997 * 109.46893 * 209.99463 * 1 2 3 32 32 H 1.08996 * 109.47442 * 330.00160 * 1 2 3 33 33 H 1.07996 * 119.55146 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.67549 * 249.15784 * 9 8 6 35 35 H 1.08993 * 109.68163 * 9.71183 * 9 8 6 36 36 H 1.09002 * 109.51236 * 292.37796 * 10 9 8 37 37 H 1.08996 * 109.51401 * 172.22011 * 10 9 8 38 38 H 1.08997 * 109.47377 * 180.02562 * 16 14 12 39 39 H 1.08999 * 109.46912 * 299.99583 * 16 14 12 40 40 H 1.09004 * 109.47433 * 59.99604 * 16 14 12 41 41 H 0.97002 * 120.00238 * 25.00238 * 17 14 12 42 42 H 0.97000 * 120.00027 * 180.02562 * 21 20 18 43 43 H 1.08996 * 109.67960 * 110.83757 * 26 8 6 44 44 H 1.08994 * 109.67808 * 350.28344 * 26 8 6 45 45 H 1.08005 * 120.46885 * 179.72334 * 27 5 4 46 46 H 1.09003 * 109.46684 * 90.00750 * 29 28 2 47 47 H 1.09000 * 109.46718 * 209.99806 * 29 28 2 48 48 H 1.08997 * 109.47107 * 330.00210 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0866 0.0005 6 6 5.7097 0.1511 0.0005 7 8 6.3616 -0.8511 -0.2169 8 7 6.3333 1.3214 0.2414 9 6 5.5659 2.5410 0.5407 10 6 6.1390 3.1724 1.8145 11 8 7.5520 3.3317 1.6664 12 6 8.2655 2.1036 1.5035 13 1 8.0672 1.4517 2.3544 14 6 9.7658 2.3916 1.4190 15 1 10.3091 1.4549 1.2944 16 6 10.2259 3.0814 2.7049 17 7 10.0315 3.2656 0.2739 18 6 11.2653 3.2599 -0.3201 19 1 12.0424 2.6106 0.0554 20 6 11.5173 4.0885 -1.4049 21 7 10.5704 4.8802 -1.8622 22 14 13.2006 4.0812 -2.2147 23 1 14.0815 3.1106 -1.5168 24 1 13.0624 3.6876 -3.6399 25 1 13.7959 5.4391 -2.1316 26 6 7.8014 1.4174 0.2137 27 6 3.5923 -1.1518 -0.0053 28 6 2.2067 -1.1963 0.0005 29 6 1.4779 -2.5153 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3634 0.8899 0.5138 33 1 1.6648 2.1305 -0.0004 34 1 5.6541 3.2428 -0.2886 35 1 4.5177 2.2861 0.6967 36 1 5.9330 2.5244 2.6665 37 1 5.6779 4.1466 1.9772 38 1 11.2946 3.2870 2.6445 39 1 9.6826 4.0181 2.8290 40 1 10.0282 2.4310 3.5570 41 1 9.3335 3.8485 -0.0636 42 1 10.7463 5.4589 -2.6205 43 1 8.1145 2.0062 -0.6484 44 1 8.2334 0.4186 0.1533 45 1 4.1695 -2.0647 -0.0098 46 1 1.3028 -2.8336 -1.0272 47 1 2.0811 -3.2636 0.5148 48 1 0.5231 -2.4028 0.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734181002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:45 Heat of formation + Delta-G solvation = -12.415959 kcal Electronic energy + Delta-G solvation = -29253.523995 eV Core-core repulsion = 25309.676437 eV Total energy + Delta-G solvation = -3943.847557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17378 -39.66940 -38.13890 -35.59170 -35.01455 -34.21118 -32.78129 -32.19663 -30.09977 -29.02666 -28.32244 -28.05213 -26.97979 -24.19867 -23.39707 -23.26794 -23.09847 -21.59289 -19.66477 -19.43878 -17.66235 -17.30806 -16.88227 -16.08271 -15.94498 -15.60790 -15.51061 -15.03727 -14.83204 -14.54072 -14.53294 -14.15189 -13.71321 -13.50225 -13.37302 -13.31071 -13.25294 -13.15407 -12.94779 -12.72188 -12.44638 -12.23508 -11.95799 -11.80478 -11.59700 -11.23211 -11.05101 -10.79389 -10.71622 -10.40387 -10.25825 -10.20833 -9.94556 -9.84087 -9.78090 -9.49888 -9.28611 -8.97253 -8.85832 -8.21431 -6.85365 -5.67414 -2.95572 0.37793 0.83302 2.62611 2.97000 3.49010 3.54657 3.56104 3.56737 3.86033 4.18159 4.24138 4.29858 4.44095 4.46679 4.66486 4.81237 4.98411 5.03514 5.08594 5.14565 5.20513 5.30281 5.32538 5.41439 5.45740 5.49633 5.52466 5.54620 5.64671 5.66324 5.85547 5.88492 5.92626 5.98338 6.08752 6.16310 6.29595 6.39926 6.48515 6.53118 6.73900 6.75753 6.85387 7.21093 7.35566 7.54574 7.62838 7.78956 8.17884 8.50857 9.63014 10.21005 10.58396 11.54929 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.002671 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.749051 B =10480.734326 C =10730.076985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C 0.096 3.904 4 N -0.449 5.449 5 C 0.085 3.915 6 C 0.565 3.435 7 O -0.539 6.539 8 N -0.586 5.586 9 C 0.032 3.968 10 C 0.047 3.953 11 O -0.362 6.362 12 C 0.080 3.920 13 H 0.053 0.947 14 C 0.182 3.818 15 H 0.059 0.941 16 C -0.160 4.160 17 N -0.717 5.717 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.930 5.930 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.082 3.918 27 C -0.109 4.109 28 C -0.049 4.049 29 C -0.119 4.119 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.390 0.610 42 H 0.253 0.747 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.148 0.852 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.588 -11.088 7.344 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.062 4.062 4 N -0.160 5.160 5 C -0.052 4.052 6 C 0.352 3.648 7 O -0.416 6.416 8 N -0.317 5.317 9 C -0.091 4.091 10 C -0.031 4.031 11 O -0.280 6.280 12 C 0.021 3.979 13 H 0.070 0.930 14 C 0.072 3.928 15 H 0.077 0.923 16 C -0.220 4.220 17 N -0.360 5.360 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.039 4.039 27 C -0.129 4.129 28 C -0.057 4.057 29 C -0.175 4.175 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.181 0.819 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.225 0.775 42 H 0.063 0.937 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.166 0.834 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.471 -10.694 7.158 26.768 hybrid contribution 0.226 -0.511 -0.644 0.853 sum -23.245 -11.205 6.515 26.615 Atomic orbital electron populations 1.20828 0.89894 1.03492 1.02964 1.20990 0.97765 0.93558 1.00093 1.22900 0.89684 0.97859 0.95785 1.67493 1.07942 1.28734 1.11832 1.21214 0.94271 0.89622 1.00090 1.17872 0.85697 0.83352 0.77912 1.90774 1.65791 1.34541 1.50517 1.48066 1.07786 1.08765 1.67073 1.23826 1.00842 0.86143 0.98253 1.22975 0.83094 1.01102 0.95955 1.88080 1.17158 1.29539 1.93216 1.22866 0.94372 0.85752 0.94917 0.92957 1.20256 0.88499 0.94716 0.89375 0.92300 1.22343 1.01603 1.00839 0.97207 1.42396 1.13432 1.47402 1.32721 1.19293 0.89862 1.18513 1.09098 0.91184 1.24724 0.97626 0.99437 0.99178 1.69691 1.31952 1.28457 1.27711 0.86156 0.83993 0.77103 0.79183 1.20617 1.22016 1.22010 1.22519 0.77610 1.03191 1.00627 1.21981 0.94126 0.99010 0.97807 1.20221 0.93198 0.95924 0.96367 1.20894 1.00428 0.92979 1.03239 0.90457 0.90793 0.90836 0.81869 0.90647 0.82871 0.93922 0.88240 0.92791 0.92544 0.94912 0.77481 0.93701 0.88263 0.88671 0.83415 0.90169 0.90712 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.65 36.00 0.35 -0.12 16 2 C -0.12 -0.89 5.91 -104.36 -0.62 -1.51 16 3 C 0.10 0.82 10.86 -17.56 -0.19 0.63 16 4 N -0.45 -5.26 6.09 -9.80 -0.06 -5.32 16 5 C 0.08 1.14 6.60 -83.01 -0.55 0.59 16 6 C 0.57 9.50 7.68 -12.18 -0.09 9.41 16 7 O -0.54 -10.40 15.85 5.35 0.08 -10.31 16 8 N -0.59 -9.91 3.02 -173.27 -0.52 -10.43 16 9 C 0.03 0.47 6.17 -3.53 -0.02 0.44 16 10 C 0.05 0.67 6.99 37.31 0.26 0.93 16 11 O -0.36 -6.70 9.22 -35.23 -0.32 -7.03 16 12 C 0.08 1.48 2.53 -26.58 -0.07 1.41 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.18 3.80 2.74 -67.94 -0.19 3.61 16 15 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 16 C -0.16 -3.09 9.35 37.16 0.35 -2.74 16 17 N -0.72 -18.34 4.29 -53.43 -0.23 -18.56 16 18 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 22 Si 0.90 22.90 29.55 -169.99 -5.02 17.88 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 C 0.08 1.57 5.87 -3.53 -0.02 1.55 16 27 C -0.11 -1.21 9.33 -39.05 -0.36 -1.57 16 28 C -0.05 -0.41 5.91 -104.35 -0.62 -1.02 16 29 C -0.12 -0.62 9.67 36.00 0.35 -0.27 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.23 6.06 -51.93 -0.31 -0.08 16 32 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.16 1.96 3.92 -88.34 -0.35 1.61 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.14 7.68 -51.93 -0.40 0.74 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.39 10.81 7.20 -40.82 -0.29 10.52 16 42 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.10 2.20 7.26 -51.93 -0.38 1.82 16 44 H 0.09 1.85 7.07 -51.93 -0.37 1.48 16 45 H 0.15 1.61 7.69 -52.48 -0.40 1.21 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 48 H 0.08 0.27 6.07 -51.93 -0.32 -0.04 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -34.09 383.65 -8.67 -42.76 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -7.43 Total: 9.09 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.67 Total: 4.05 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.09 Total: -62.22 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.24 Total: -17.34 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.09 -8.67 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734181002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.340 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds